AutismKB 2.0

Annotation Detail for ELOVL6


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Basic Information Top
Gene Symbol:ELOVL6 ( FACE,FAE,FLJ23378,LCE,MGC5487 )
Gene Full Name: ELOVL family member 6, elongation of long chain fatty acids (FEN1/Elo2, SUR4/Elo3-like, yeast)
Band: 4q25
Quick LinksEntrez ID:79071; OMIM: 611546; Uniprot ID:ELOV6_HUMAN; ENSEMBL ID: ENSG00000170522; HGNC ID: 15829
Relate to Another Database: SFARIGene; denovo-db
Unigene EST Top
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
embryoid body2 / 7076128
blastocyst8 / 62319128
fetus41 / 56401272
neonate2 / 3109764
infant1 / 2362042
juvenile2 / 5555635
adult64 / 193912133
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
adrenal tumor1 / 1279478
bladder carcinoma1 / 1747557
breast (mammary gland) tumor14 / 94178148
cervical tumor1 / 3436629
chondrosarcoma3 / 8282336
colorectal tumor1 / 1142468
esophageal tumor1 / 1729057
gastrointestinal tumor1 / 1193698
germ cell tumor18 / 26384568
glioma6 / 10688356
head and neck tumor4 / 13630229
kidney tumor0 / 689590 
leukemia10 / 95842104
liver tumor2 / 9635920
lung tumor2 / 10312719
lymphoma3 / 7175541
non-neoplasia3 / 9725030
normal106 / 336030731
ovarian tumor4 / 7668252
pancreatic tumor0 / 1046160 
primitive neuroectodermal tumor of the CNS4 / 12568031
prostate cancer2 / 10268019
retinoblastoma1 / 4635621
skin tumor3 / 12494924
soft tissue/muscle tissue tumor1 / 1251917
uterine tumor0 / 902570 
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
adipose tissue1 / 1310676
adrenal gland2 / 3319760
ascites0 / 400150 
bladder3 / 29757100
blood1 / 1234788
bone4 / 7165555
bone marrow7 / 48801143
brain30 / 110098927
cervix1 / 4817120
connective tissue3 / 14925520
ear0 / 162120 
embryonic tissue16 / 21572274
esophagus1 / 2020949
eye4 / 21105418
heart1 / 8962611
intestine6 / 23447225
kidney7 / 21177733
larynx0 / 241450 
liver3 / 20774314
lung11 / 33697432
lymph1 / 4427022
lymph node0 / 916100 
mammary gland14 / 15327191
mouth5 / 6705274
muscle1 / 1077159
nerve0 / 157680 
ovary3 / 10205129
pancreas7 / 21481232
parathyroid0 / 205390 
pharynx0 / 413280 
pituitary gland0 / 165850 
placenta5 / 28082517
prostate3 / 18934515
salivary gland0 / 201550 
skin8 / 21057437
spleen0 / 539520 
stomach2 / 9661920
testis14 / 33044242
thymus5 / 8113161
thyroid0 / 474730 
tonsil0 / 169990 
trachea0 / 524130 
umbilical cord0 / 136800 
uterus1 / 2328784
vascular3 / 5178057
Microarray in BioGPS Top
Select probe  
  • Microarray Platform: GeneAtlas U133A, gcrma
  • Affymatrix Probe ID: 204256_at
Cell line Expression level Expression bar
721_B_lymphoblasts34.2
Adipocyte182.35
AdrenalCortex5.4
Adrenalgland4.1
Amygdala5.15
Appendix4.9
AtrioventricularNode3.8
BDCA4+_DentriticCells4.95
Bonemarrow4.85
BronchialEpithelialCells71.7
CD105+_Endothelial60.05
CD14+_Monocytes5.35
CD19+_BCells(neg._sel.)4.95
CD33+_Myeloid6.35
CD34+63.7
CD4+_Tcells4.95
CD56+_NKCells6.15
CD71+_EarlyErythroid13.65
CD8+_Tcells4.5
CardiacMyocytes6.55
Caudatenucleus4.3
Cerebellum3.85
CerebellumPeduncles5.5
CiliaryGanglion3.9
CingulateCortex4.9
Colorectaladenocarcinoma4.8
DorsalRootGanglion3.85
FetalThyroid4.7
Fetalbrain4.9
Fetalliver33.9
Fetallung4.1
GlobusPallidus3.6
Heart6.45
Hypothalamus5.4
Kidney3.95
Leukemia_chronicMyelogenousK-56283.95
Leukemia_promyelocytic-HL-608.35
Leukemialymphoblastic(MOLT-4)3.9
Liver6.5
Lung5.1
Lymphnode3.95
Lymphoma_burkitts(Daudi)6.15
Lymphoma_burkitts(Raji)8.75
MedullaOblongata4.2
OccipitalLobe4.4
OlfactoryBulb3.75
Ovary3.3
Pancreas3.9
PancreaticIslet5.15
ParietalLobe5.1
Pituitary5.6
Placenta4.75
Pons4.6
PrefrontalCortex6.2
Prostate5.45
Salivarygland3.85
SkeletalMuscle5.8
Skin4.3
SmoothMuscle5.35
Spinalcord10.45
SubthalamicNucleus4.4
SuperiorCervicalGanglion5.65
TemporalLobe4.4
Testis4.05
TestisGermCell3.8
TestisIntersitial4
TestisLeydigCell4.8
TestisSeminiferousTubule4
Thalamus4.9
Thymus3.65
Thyroid5.8
Tongue4.8
Tonsil4.7
Trachea3.95
TrigeminalGanglion4.95
Uterus3.8
UterusCorpus4.35
WholeBlood5.25
Wholebrain4.15
colon29.95
pineal_day5.9
pineal_night5.94
retina5.85
small_intestine5.1
Allen Brain Atlas Top
Human Whole Brain Microarrayview in Allen Brain Atlas
  • Probe id     Donor id      
  • Probe name: A_32_P107833
  • Donor H0351.2001
  • Sex: Male     Age: 24 years     Race/Ethnicity: African American     Handedness: Left
  • Tissue Receipt Date: 7/29/2009     Serology: Pass      Tissue pH :6.72     Additional Medical Information :History of asthma
  • Postmortem Interval: 23 hours (estimated time of death to time that tissue is frozen)
  • Toxicology: Positive for atropine and caffeine, at levels usually not toxicologically significant
Tissue Expression(mean ± stddev) Expression Bar
Amygdala5.11 ± 0.34
Basal Forebrain4.98 ± 0.35
Basal Part of Pons5.08 ± 0.3
Cerebellar Cortex4.76 ± 0.28
Cerebellar Nuclei5.42 ± 0.26
Claustrum4.69 ± 0.71
Epithalamus5.24 ± 0.45
Frontal Lobe5.09 ± 0.39
Globus Pallidus5.33 ± 0.32
Hypothalamus5 ± 0.58
Insula5.33 ± 0.49
Limbic Lobe4.99 ± 0.44
Mesencephalon5.02 ± 0.51
Myelencephalon5.06 ± 0.43
Occipital Lobe5.08 ± 0.36
Parietal Lobe5.06 ± 0.38
Pontine Tegmentum5.12 ± 0.45
Striatum5.18 ± 0.46
Subthalamus5.55 ± 0.27
Temporal Lobe4.97 ± 0.38
Thalamus5.08 ± 0.37
White Matter5.73 ± 0.3
Mouse Brain ISH
Gene Symbol Brain Structure ID Brain Structure Name Express Desity/Level (Meatured by ISH) Express Bar
Elovl6CBCerebellum26.45
72.36
Elovl6CTXCerebral cortex28.92
23.78
Elovl6HIPHippocampal region24.85
34.98
Elovl6HPFHippocampal formation23.95
27.74
Elovl6HYHypothalamus30.07
25.91
Elovl6LSXLateral septal complex23.51
18.3
Elovl6MBMidbrain33.01
34.42
Elovl6MYMedulla36.3
43.54
Elovl6OLFOlfactory bulb31.07
35.13
Elovl6PPons32.28
35.47
Elovl6PALPallidum30.02
31.96
Elovl6RHPRetrohippocampal region24.23
20.81
Elovl6sAMYStriatum-like amygdalar nuclei18.24
15.73
Elovl6STRStriatum12.52
10.52
Elovl6STRdStriatum dorsal region10.13
8.82
Elovl6STRvStriatum ventral region13.24
10.2
Elovl6THThalamus35.19
34.04
Peptide Top

Simple Query:


  (e.g. CHD8)

Syndromic Genes

Non-syndromic Genes

AutismKB Statistics

  • Studies: 1,036
  • Genes: 1,379
  • CNVs/SVs: 5,420
  • SNVs/Indels: 11,669
  • de novo Mutations: 5,669
  • Mosaics: 789
  • Linkage Regions: 172
  • Paper Collected: 6/30/2018
  • Last Update: 8/26/2018


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