Annotation Detail for PHF23
Basic Information Top
| Gene Symbol: | PHF23 ( FLJ16355,FLJ22884,MGC2941,hJUNE-1b ) |
|---|---|
| Gene Full Name: | PHD finger protein 23 |
| Band: | 17p13.1 |
| Quick Links | Entrez ID:79142; OMIM: 612910; Uniprot ID:PHF23_HUMAN; ENSEMBL ID: ENSG00000040633; HGNC ID: 28428 |
| Relate to Another Database: | SFARIGene; denovo-db |
- Unigene ID: Hs.644724
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
 | |||
| embryoid body | 8 / 70761 | 113 |  |
| blastocyst | 8 / 62319 | 128 | |
| fetus | 22 / 564012 | 39 |  |
| neonate | 0 / 31097 | 0 | |
| infant | 2 / 23620 | 84 | |
| juvenile | 0 / 55556 | 0 | |
| adult | 101 / 1939121 | 52 | |
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
| |||
| adrenal tumor | 1 / 12794 | 78 | |
| bladder carcinoma | 0 / 17475 | 0 | |
| breast (mammary gland) tumor | 3 / 94178 | 31 | |
| cervical tumor | 5 / 34366 | 145 | |
| chondrosarcoma | 6 / 82823 | 72 | |
| colorectal tumor | 10 / 114246 | 87 | |
| esophageal tumor | 1 / 17290 | 57 | |
| gastrointestinal tumor | 8 / 119369 | 67 | |
| germ cell tumor | 14 / 263845 | 53 | |
| glioma | 10 / 106883 | 93 | |
| head and neck tumor | 7 / 136302 | 51 | |
| kidney tumor | 7 / 68959 | 101 | |
| leukemia | 4 / 95842 | 41 | |
| liver tumor | 2 / 96359 | 20 | |
| lung tumor | 4 / 103127 | 38 | |
| lymphoma | 0 / 71755 | 0 | |
| non-neoplasia | 1 / 97250 | 10 |  |
| normal | 148 / 3360307 | 44 | |
| ovarian tumor | 4 / 76682 | 52 | |
| pancreatic tumor | 3 / 104616 | 28 | |
| primitive neuroectodermal tumor of the CNS | 1 / 125680 | 7 | |
| prostate cancer | 5 / 102680 | 48 | |
| retinoblastoma | 0 / 46356 | 0 | |
| skin tumor | 9 / 124949 | 72 | |
| soft tissue/muscle tissue tumor | 10 / 125191 | 79 | |
| uterine tumor | 4 / 90257 | 44 | |
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
| |||
| adipose tissue | 1 / 13106 | 76 | |
| adrenal gland | 2 / 33197 | 60 | |
| ascites | 0 / 40015 | 0 | |
| bladder | 0 / 29757 | 0 | |
| blood | 3 / 123478 | 24 | |
| bone | 9 / 71655 | 125 | |
| bone marrow | 0 / 48801 | 0 | |
| brain | 34 / 1100989 | 30 | |
| cervix | 5 / 48171 | 103 | |
| connective tissue | 2 / 149255 | 13 | |
| ear | 0 / 16212 | 0 | |
| embryonic tissue | 21 / 215722 | 97 | |
| esophagus | 1 / 20209 | 49 | |
| eye | 11 / 211054 | 52 | |
| heart | 4 / 89626 | 44 | |
| intestine | 17 / 234472 | 72 | |
| kidney | 11 / 211777 | 51 | |
| larynx | 2 / 24145 | 82 | |
| liver | 2 / 207743 | 9 | |
| lung | 22 / 336974 | 65 | |
| lymph | 0 / 44270 | 0 | |
| lymph node | 4 / 91610 | 43 | |
| mammary gland | 3 / 153271 | 19 | |
| mouth | 0 / 67052 | 0 | |
| muscle | 4 / 107715 | 37 | |
| nerve | 0 / 15768 | 0 | |
| ovary | 6 / 102051 | 58 | |
| pancreas | 13 / 214812 | 60 | |
| parathyroid | 0 / 20539 | 0 | |
| pharynx | 0 / 41328 | 0 | |
| pituitary gland | 0 / 16585 | 0 | |
| placenta | 13 / 280825 | 46 | |
| prostate | 8 / 189345 | 42 | |
| salivary gland | 2 / 20155 | 99 | |
| skin | 26 / 210574 | 123 | |
| spleen | 0 / 53952 | 0 | |
| stomach | 6 / 96619 | 62 | |
| testis | 13 / 330442 | 39 | |
| thymus | 2 / 81131 | 24 | |
| thyroid | 5 / 47473 | 105 | |
| tonsil | 1 / 16999 | 58 | |
| trachea | 0 / 52413 | 0 | |
| umbilical cord | 0 / 13680 | 0 | |
| uterus | 15 / 232878 | 64 | |
| vascular | 1 / 51780 | 19 | |
Microarray in - Probe name: A_24_P5550
- Donor H0351.2001
- Sex: Male Age: 24 years Race/Ethnicity: African American Handedness: Left
- Tissue Receipt Date: 7/29/2009 Serology: Pass Tissue pH :6.72 Additional Medical Information :History of asthma
- Postmortem Interval: 23 hours (estimated time of death to time that tissue is frozen)
- Toxicology: Positive for atropine and caffeine, at levels usually not toxicologically significant
| Tissue | Expression(mean ± stddev) | Expression Bar |
|---|---|---|
| Amygdala | 4.61 ± 0.64 | ![](../"images/bar_3.png"){kind=small}   |
| Basal Forebrain | 4.55 ± 0.44 | |
| Basal Part of Pons | 4.62 ± 0.37 | |
| Cerebellar Cortex | 4.85 ± 0.45 | |
| Cerebellar Nuclei | 4.65 ± 0.53 | |
| Claustrum | 4.36 ± 0.77 | |
| Epithalamus | 4.96 ± 0.5 | |
| Frontal Lobe | 4.77 ± 0.44 | |
| Globus Pallidus | 4.81 ± 0.35 | |
| Hypothalamus | 4.36 ± 0.44 | |
| Insula | 4.69 ± 0.35 | |
| Limbic Lobe | 4.77 ± 0.44 | |
| Mesencephalon | 4.71 ± 0.45 | |
| Myelencephalon | 4.69 ± 0.52 | |
| Occipital Lobe | 4.6 ± 0.55 | |
| Parietal Lobe | 4.87 ± 0.43 | |
| Pontine Tegmentum | 4.74 ± 0.48 | |
| Striatum | 4.81 ± 0.55 | |
| Subthalamus | 4.56 ± 0.34 | |
| Temporal Lobe | 4.77 ± 0.4 | |
| Thalamus | 4.74 ± 0.53 | |
| White Matter | 3.65 ± 0.48 | |
Mouse Brain ISH 
| Gene Symbol | Brain Structure ID | Brain Structure Name | Express Desity/Level (Meatured by ISH) | Express Bar |
|---|---|---|---|---|
| Phf23 | CB | Cerebellum | 6.42 | |
| 7.69 | | |||
| Phf23 | CTX | Cerebral cortex | 15.37 | |
| 11.53 | | |||
| Phf23 | HIP | Hippocampal region | 23.79 | |
| 24.28 | | |||
| Phf23 | HPF | Hippocampal formation | 23.86 | |
| 22.44 | | |||
| Phf23 | HY | Hypothalamus | 13.46 | |
| 12.1 | | |||
| Phf23 | LSX | Lateral septal complex | 10.87 | |
| 8.26 | | |||
| Phf23 | MB | Midbrain | 6.07 | |
| 7.33 | | |||
| Phf23 | MY | Medulla | 5.63 | |
| 9.07 | | |||
| Phf23 | OLF | Olfactory bulb | 20.27 | |
| 16.98 | | |||
| Phf23 | P | Pons | 13.02 | |
| 18.64 | | |||
| Phf23 | PAL | Pallidum | 11.89 | |
| 10.86 | | |||
| Phf23 | RHP | Retrohippocampal region | 23.39 | |
| 19.47 | | |||
| Phf23 | sAMY | Striatum-like amygdalar nuclei | 22.1 | |
| 17.19 | | |||
| Phf23 | STR | Striatum | 10.03 | |
| 8.02 | | |||
| Phf23 | STRd | Striatum dorsal region | 6.87 | |
| 5.91 | | |||
| Phf23 | STRv | Striatum ventral region | 14.94 | |
| 10.71 | | |||
| Phf23 | TH | Thalamus | 14.47 | |
| 11.32 | |