AutismKB 2.0

Annotation Detail for BAT2


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Basic Information Top
Gene Symbol:BAT2 ( D6S51,D6S51E,DKFZp686D09175,G2 )
Gene Full Name: HLA-B associated transcript 2
Band: 6p21.3
Quick LinksEntrez ID:7916; OMIM: 142580; Uniprot ID:BAT2_HUMAN; ENSEMBL ID: ENSG00000204469; HGNC ID:
Relate to Another Database: SFARIGene; denovo-db
Unigene EST Top
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
embryoid body29 / 70761409
blastocyst27 / 62319433
fetus37 / 56401265
neonate4 / 31097128
infant0 / 236200 
juvenile7 / 55556125
adult253 / 1939121130
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
adrenal tumor1 / 1279478
bladder carcinoma4 / 17475228
breast (mammary gland) tumor21 / 94178222
cervical tumor5 / 34366145
chondrosarcoma12 / 82823144
colorectal tumor12 / 114246105
esophageal tumor1 / 1729057
gastrointestinal tumor33 / 119369276
germ cell tumor57 / 263845216
glioma20 / 106883187
head and neck tumor14 / 136302102
kidney tumor19 / 68959275
leukemia37 / 95842386
liver tumor11 / 96359114
lung tumor32 / 103127310
lymphoma28 / 71755390
non-neoplasia5 / 9725051
normal401 / 3360307119
ovarian tumor4 / 7668252
pancreatic tumor14 / 104616133
primitive neuroectodermal tumor of the CNS18 / 125680143
prostate cancer21 / 102680204
retinoblastoma21 / 46356453
skin tumor47 / 124949376
soft tissue/muscle tissue tumor41 / 125191327
uterine tumor12 / 90257132
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
adipose tissue2 / 13106152
adrenal gland1 / 3319730
ascites15 / 40015374
bladder3 / 29757100
blood28 / 123478226
bone11 / 71655153
bone marrow3 / 4880161
brain95 / 110098986
cervix5 / 48171103
connective tissue5 / 14925533
ear0 / 162120 
embryonic tissue74 / 215722343
esophagus1 / 2020949
eye57 / 211054270
heart5 / 8962655
intestine31 / 234472132
kidney23 / 211777108
larynx3 / 24145124
liver12 / 20774357
lung53 / 336974157
lymph26 / 44270587
lymph node51 / 91610556
mammary gland33 / 153271215
mouth6 / 6705289
muscle33 / 107715306
nerve7 / 15768443
ovary26 / 102051254
pancreas17 / 21481279
parathyroid0 / 205390 
pharynx0 / 413280 
pituitary gland0 / 165850 
placenta26 / 28082592
prostate27 / 189345142
salivary gland3 / 20155148
skin53 / 210574251
spleen5 / 5395292
stomach7 / 9661972
testis32 / 33044296
thymus15 / 81131184
thyroid4 / 4747384
tonsil2 / 16999117
trachea1 / 5241319
umbilical cord3 / 13680219
uterus43 / 232878184
vascular2 / 5178038
Microarray in BioGPS Top
Select probe  
  • Microarray Platform: GeneAtlas U133A, gcrma
  • Affymatrix Probe ID: 214201_x_at
Cell line Expression level Expression bar
721_B_lymphoblasts425.45
Adipocyte238.3
AdrenalCortex292.4
Adrenalgland204.6
Amygdala199.6
Appendix136.7
AtrioventricularNode185.3
BDCA4+_DentriticCells232.05
Bonemarrow185.65
BronchialEpithelialCells134.6
CD105+_Endothelial349
CD14+_Monocytes378.95
CD19+_BCells(neg._sel.)249.5
CD33+_Myeloid222.25
CD34+570.3
CD4+_Tcells252.1
CD56+_NKCells269.05
CD71+_EarlyErythroid220.9
CD8+_Tcells197.45
CardiacMyocytes238.9
Caudatenucleus173.45
Cerebellum148.2
CerebellumPeduncles490.2
CiliaryGanglion119
CingulateCortex260.85
Colorectaladenocarcinoma211.6
DorsalRootGanglion159.3
FetalThyroid235.75
Fetalbrain237.35
Fetalliver112.5
Fetallung159.7
GlobusPallidus327.75
Heart295.6
Hypothalamus183.9
Kidney185.2
Leukemia_chronicMyelogenousK-562233.8
Leukemia_promyelocytic-HL-60167.4
Leukemialymphoblastic(MOLT-4)273.1
Liver154.7
Lung206.1
Lymphnode168.45
Lymphoma_burkitts(Daudi)251.15
Lymphoma_burkitts(Raji)307.85
MedullaOblongata206.35
OccipitalLobe219.9
OlfactoryBulb179.75
Ovary138.65
Pancreas167.4
PancreaticIslet198.3
ParietalLobe230.3
Pituitary235.05
Placenta174.65
Pons355.75
PrefrontalCortex274.15
Prostate295.25
Salivarygland143.5
SkeletalMuscle210.05
Skin156.45
SmoothMuscle192.45
Spinalcord252.65
SubthalamicNucleus332.05
SuperiorCervicalGanglion156.5
TemporalLobe337.65
Testis289.25
TestisGermCell292.5
TestisIntersitial361.35
TestisLeydigCell222.85
TestisSeminiferousTubule357.95
Thalamus351.15
Thymus140.55
Thyroid199.3
Tongue301.15
Tonsil198.25
Trachea187.9
TrigeminalGanglion311.55
Uterus116.1
UterusCorpus167.7
WholeBlood155.65
Wholebrain110.55
colon157.1
pineal_day487.9
pineal_night485.26
retina239.3
small_intestine124.85
Allen Brain Atlas Top
Human Whole Brain Microarrayview in Allen Brain Atlas
  • Probe id     Donor id      
  • Probe name: A_24_P641130
  • Donor H0351.2001
  • Sex: Male     Age: 24 years     Race/Ethnicity: African American     Handedness: Left
  • Tissue Receipt Date: 7/29/2009     Serology: Pass      Tissue pH :6.72     Additional Medical Information :History of asthma
  • Postmortem Interval: 23 hours (estimated time of death to time that tissue is frozen)
  • Toxicology: Positive for atropine and caffeine, at levels usually not toxicologically significant
Tissue Expression(mean ± stddev) Expression Bar
Amygdala4.14 ± 0.66
Basal Forebrain4.25 ± 0.66
Basal Part of Pons4.62 ± 0.45
Cerebellar Cortex4.63 ± 0.6
Cerebellar Nuclei4.01 ± 0.57
Claustrum3.87 ± 0.63
Epithalamus4.08 ± 0.77
Frontal Lobe4.45 ± 0.61
Globus Pallidus3.43 ± 0.51
Hypothalamus3.91 ± 0.52
Insula4.53 ± 0.52
Limbic Lobe4.33 ± 0.7
Mesencephalon4.34 ± 0.62
Myelencephalon4.28 ± 0.6
Occipital Lobe4.12 ± 0.53
Parietal Lobe4.3 ± 0.61
Pontine Tegmentum4.11 ± 0.59
Striatum3.96 ± 0.54
Subthalamus3.91 ± 0.49
Temporal Lobe4.52 ± 0.55
Thalamus4.37 ± 0.72
White Matter3.54 ± 0.65
Mouse Brain ISH
Peptide Top
Peptide Name Peptide Lengh Peptide Start Peptide End Peptide Sequence Source
BAT2_HUMAN_759 13 759 771 SDSGGSSSEPFDR PRIDE
PAp00010212 20 433 452 GGPPCKPPAPEDEDEAWRQR Peptide Atlas

Simple Query:


  (e.g. CHD8)

Syndromic Genes

Non-syndromic Genes

AutismKB Statistics

  • Studies: 1,036
  • Genes: 1,379
  • CNVs/SVs: 5,420
  • SNVs/Indels: 11,669
  • de novo Mutations: 5,669
  • Mosaics: 789
  • Linkage Regions: 172
  • Paper Collected: 6/30/2018
  • Last Update: 8/26/2018


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