AutismKB 2.0

Annotation Detail for C7orf23


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Basic Information Top
Gene Symbol:C7orf23 ( MGC4175,MM-TRAG )
Gene Full Name: chromosome 7 open reading frame 23
Band: 7q21.1-q21.2
Quick LinksEntrez ID:79161; OMIM: NA; Uniprot ID:CG023_HUMAN; ENSEMBL ID: ENSG00000135185; HGNC ID:
Relate to Another Database: SFARIGene; denovo-db
Unigene EST Top
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
embryoid body2 / 7076128
blastocyst0 / 623190 
fetus12 / 56401221
neonate0 / 310970 
infant1 / 2362042
juvenile1 / 5555617
adult62 / 193912131
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
adrenal tumor0 / 127940 
bladder carcinoma1 / 1747557
breast (mammary gland) tumor3 / 9417831
cervical tumor1 / 3436629
chondrosarcoma2 / 8282324
colorectal tumor3 / 11424626
esophageal tumor0 / 172900 
gastrointestinal tumor3 / 11936925
germ cell tumor5 / 26384518
glioma6 / 10688356
head and neck tumor2 / 13630214
kidney tumor2 / 6895929
leukemia3 / 9584231
liver tumor1 / 9635910
lung tumor2 / 10312719
lymphoma6 / 7175583
non-neoplasia1 / 9725010
normal79 / 336030723
ovarian tumor0 / 766820 
pancreatic tumor4 / 10461638
primitive neuroectodermal tumor of the CNS5 / 12568039
prostate cancer1 / 1026809
retinoblastoma0 / 463560 
skin tumor2 / 12494916
soft tissue/muscle tissue tumor5 / 12519139
uterine tumor1 / 9025711
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
adipose tissue0 / 131060 
adrenal gland1 / 3319730
ascites1 / 4001524
bladder0 / 297570 
blood4 / 12347832
bone2 / 7165527
bone marrow1 / 4880120
brain22 / 110098919
cervix1 / 4817120
connective tissue7 / 14925546
ear0 / 162120 
embryonic tissue4 / 21572218
esophagus0 / 202090 
eye0 / 2110540 
heart0 / 896260 
intestine4 / 23447217
kidney10 / 21177747
larynx0 / 241450 
liver1 / 2077434
lung13 / 33697438
lymph5 / 44270112
lymph node6 / 9161065
mammary gland3 / 15327119
mouth0 / 670520 
muscle3 / 10771527
nerve0 / 157680 
ovary1 / 1020519
pancreas8 / 21481237
parathyroid6 / 20539292
pharynx1 / 4132824
pituitary gland0 / 165850 
placenta7 / 28082524
prostate5 / 18934526
salivary gland0 / 201550 
skin9 / 21057442
spleen2 / 5395237
stomach2 / 9661920
testis8 / 33044224
thymus0 / 811310 
thyroid2 / 4747342
tonsil1 / 1699958
trachea1 / 5241319
umbilical cord0 / 136800 
uterus4 / 23287817
vascular1 / 5178019
Microarray in BioGPS Top
Select probe  
  • Microarray Platform: GeneAtlas U133A, gcrma
  • Affymatrix Probe ID: 204215_at
Cell line Expression level Expression bar
721_B_lymphoblasts541.55
Adipocyte39.15
AdrenalCortex20.75
Adrenalgland17.2
Amygdala28.65
Appendix28.3
AtrioventricularNode8.15
BDCA4+_DentriticCells410.15
Bonemarrow20.45
BronchialEpithelialCells23.7
CD105+_Endothelial23.7
CD14+_Monocytes180.1
CD19+_BCells(neg._sel.)689.35
CD33+_Myeloid134.85
CD34+94.45
CD4+_Tcells277.35
CD56+_NKCells116.6
CD71+_EarlyErythroid7.85
CD8+_Tcells309.55
CardiacMyocytes16.65
Caudatenucleus15.35
Cerebellum10.6
CerebellumPeduncles10.95
CiliaryGanglion12
CingulateCortex15.9
Colorectaladenocarcinoma229.75
DorsalRootGanglion20.75
FetalThyroid176.45
Fetalbrain11.4
Fetalliver13.85
Fetallung124.4
GlobusPallidus8.65
Heart14.75
Hypothalamus20.25
Kidney25.1
Leukemia_chronicMyelogenousK-56222.4
Leukemia_promyelocytic-HL-60169.25
Leukemialymphoblastic(MOLT-4)106.15
Liver26.55
Lung199.95
Lymphnode194.9
Lymphoma_burkitts(Daudi)490.3
Lymphoma_burkitts(Raji)385.55
MedullaOblongata13.1
OccipitalLobe13.55
OlfactoryBulb18.6
Ovary19.7
Pancreas22.45
PancreaticIslet76.7
ParietalLobe9.15
Pituitary27.35
Placenta64.75
Pons11.3
PrefrontalCortex32.4
Prostate34.3
Salivarygland32.15
SkeletalMuscle20.7
Skin12.35
SmoothMuscle52.65
Spinalcord32.75
SubthalamicNucleus17.95
SuperiorCervicalGanglion30.75
TemporalLobe18.2
Testis20.35
TestisGermCell22.05
TestisIntersitial26.25
TestisLeydigCell23.1
TestisSeminiferousTubule20
Thalamus15.95
Thymus32.9
Thyroid544.45
Tongue17.4
Tonsil145.5
Trachea68.45
TrigeminalGanglion16
Uterus66.6
UterusCorpus24.4
WholeBlood157.6
Wholebrain28.4
colon66.75
pineal_day18.7
pineal_night11.74
retina26.525
small_intestine94.15
Allen Brain Atlas Top
Human Whole Brain Microarrayview in Allen Brain Atlas
  • Probe id     Donor id      
  • Probe name: CUST_5726_PI416261804
  • Donor H0351.2001
  • Sex: Male     Age: 24 years     Race/Ethnicity: African American     Handedness: Left
  • Tissue Receipt Date: 7/29/2009     Serology: Pass      Tissue pH :6.72     Additional Medical Information :History of asthma
  • Postmortem Interval: 23 hours (estimated time of death to time that tissue is frozen)
  • Toxicology: Positive for atropine and caffeine, at levels usually not toxicologically significant
Tissue Expression(mean ± stddev) Expression Bar
Amygdala7.45 ± 0.31
Basal Forebrain7.13 ± 0.2
Basal Part of Pons7.44 ± 0.25
Cerebellar Cortex6.68 ± 0.32
Cerebellar Nuclei7.31 ± 0.34
Claustrum6.72 ± 0.42
Epithalamus7.88 ± 0.43
Frontal Lobe7.1 ± 0.44
Globus Pallidus7.67 ± 0.26
Hypothalamus7.01 ± 0.46
Insula6.95 ± 0.38
Limbic Lobe7.12 ± 0.49
Mesencephalon7.02 ± 0.38
Myelencephalon7.11 ± 0.36
Occipital Lobe7.25 ± 0.29
Parietal Lobe7.23 ± 0.38
Pontine Tegmentum7.05 ± 0.49
Striatum6.87 ± 0.44
Subthalamus7.18 ± 0.34
Temporal Lobe6.98 ± 0.4
Thalamus6.91 ± 0.32
White Matter7.45 ± 0.28
Mouse Brain ISH
Peptide Top
Peptide Name Peptide Lengh Peptide Start Peptide End Peptide Sequence Source
PAp00042968 19 8 26 TYGTSGLDNRPLFGETSAK Peptide Atlas

Simple Query:


  (e.g. CHD8)

Syndromic Genes

Non-syndromic Genes

AutismKB Statistics

  • Studies: 1,036
  • Genes: 1,379
  • CNVs/SVs: 5,420
  • SNVs/Indels: 11,669
  • de novo Mutations: 5,669
  • Mosaics: 789
  • Linkage Regions: 172
  • Paper Collected: 6/30/2018
  • Last Update: 8/26/2018


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