Annotation Detail for FSD1
Basic Information Top
| Gene Symbol: | FSD1 ( GLFND,MGC3213,MIR1 ) |
|---|---|
| Gene Full Name: | fibronectin type III and SPRY domain containing 1 |
| Band: | 19p13.3 |
| Quick Links | Entrez ID:79187; OMIM: 609828; Uniprot ID:FSD1_HUMAN; ENSEMBL ID: ENSG00000105255; HGNC ID: 13745 |
| Relate to Another Database: | SFARIGene; denovo-db |
- Unigene ID: Hs.28144
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
 | |||
| embryoid body | 2 / 70761 | 28 |  |
| blastocyst | 1 / 62319 | 16 | |
| fetus | 33 / 564012 | 58 |  |
| neonate | 0 / 31097 | 0 | |
| infant | 8 / 23620 | 338 |  |
| juvenile | 1 / 55556 | 17 | |
| adult | 38 / 1939121 | 19 | |
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
| |||
| adrenal tumor | 0 / 12794 | 0 | |
| bladder carcinoma | 0 / 17475 | 0 | |
| breast (mammary gland) tumor | 0 / 94178 | 0 | |
| cervical tumor | 0 / 34366 | 0 | |
| chondrosarcoma | 1 / 82823 | 12 | |
| colorectal tumor | 0 / 114246 | 0 | |
| esophageal tumor | 0 / 17290 | 0 | |
| gastrointestinal tumor | 3 / 119369 | 25 | |
| germ cell tumor | 16 / 263845 | 60 | |
| glioma | 10 / 106883 | 93 | |
| head and neck tumor | 2 / 136302 | 14 | |
| kidney tumor | 3 / 68959 | 43 | |
| leukemia | 2 / 95842 | 20 | |
| liver tumor | 0 / 96359 | 0 | |
| lung tumor | 1 / 103127 | 9 |  |
| lymphoma | 2 / 71755 | 27 | |
| non-neoplasia | 5 / 97250 | 51 | |
| normal | 110 / 3360307 | 32 | |
| ovarian tumor | 2 / 76682 | 26 | |
| pancreatic tumor | 0 / 104616 | 0 | |
| primitive neuroectodermal tumor of the CNS | 41 / 125680 | 326 | |
| prostate cancer | 0 / 102680 | 0 | |
| retinoblastoma | 14 / 46356 | 302 | |
| skin tumor | 9 / 124949 | 72 | |
| soft tissue/muscle tissue tumor | 3 / 125191 | 23 | |
| uterine tumor | 0 / 90257 | 0 |
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
| |||
| adipose tissue | 0 / 13106 | 0 | |
| adrenal gland | 0 / 33197 | 0 | |
| ascites | 1 / 40015 | 24 | |
| bladder | 0 / 29757 | 0 | |
| blood | 2 / 123478 | 16 | |
| bone | 2 / 71655 | 27 | |
| bone marrow | 0 / 48801 | 0 | |
| brain | 120 / 1100989 | 108 | |
| cervix | 0 / 48171 | 0 | |
| connective tissue | 0 / 149255 | 0 | |
| ear | 0 / 16212 | 0 | |
| embryonic tissue | 8 / 215722 | 37 | |
| esophagus | 0 / 20209 | 0 | |
| eye | 16 / 211054 | 75 | |
| heart | 0 / 89626 | 0 | |
| intestine | 2 / 234472 | 8 | |
| kidney | 3 / 211777 | 14 | |
| larynx | 0 / 24145 | 0 | |
| liver | 0 / 207743 | 0 | |
| lung | 3 / 336974 | 8 | |
| lymph | 0 / 44270 | 0 | |
| lymph node | 0 / 91610 | 0 | |
| mammary gland | 0 / 153271 | 0 | |
| mouth | 2 / 67052 | 29 | |
| muscle | 2 / 107715 | 18 | |
| nerve | 1 / 15768 | 63 | |
| ovary | 3 / 102051 | 29 | |
| pancreas | 0 / 214812 | 0 | |
| parathyroid | 0 / 20539 | 0 | |
| pharynx | 0 / 41328 | 0 | |
| pituitary gland | 1 / 16585 | 60 | |
| placenta | 5 / 280825 | 17 | |
| prostate | 0 / 189345 | 0 | |
| salivary gland | 0 / 20155 | 0 | |
| skin | 9 / 210574 | 42 | |
| spleen | 0 / 53952 | 0 | |
| stomach | 0 / 96619 | 0 | |
| testis | 15 / 330442 | 45 | |
| thymus | 1 / 81131 | 12 | |
| thyroid | 0 / 47473 | 0 | |
| tonsil | 1 / 16999 | 58 | |
| trachea | 0 / 52413 | 0 | |
| umbilical cord | 0 / 13680 | 0 | |
| uterus | 1 / 232878 | 4 | |
| vascular | 1 / 51780 | 19 | |
- Microarray Platform: GeneAtlas U133A, gcrma
- Affymatrix Probe ID: 219170_at
| Cell line | Expression level | Expression bar |
|---|---|---|
| ||
| 721_B_lymphoblasts | 5.15 | |
| Adipocyte | 5.2 | |
| AdrenalCortex | 4.65 | |
| Adrenalgland | 4.2 | |
| Amygdala | 57.7 | |
| Appendix | 4.5 | |
| AtrioventricularNode | 3.25 | |
| BDCA4+_DentriticCells | 5.25 | |
| Bonemarrow | 4.5 | |
| BronchialEpithelialCells | 5.75 | |
| CD105+_Endothelial | 4.7 | |
| CD14+_Monocytes | 4.95 | |
| CD19+_BCells(neg._sel.) | 5.25 | |
| CD33+_Myeloid | 6.25 | |
| CD34+ | 6.15 | |
| CD4+_Tcells | 5.45 | |
| CD56+_NKCells | 13.95 | |
| CD71+_EarlyErythroid | 4.45 | |
| CD8+_Tcells | 6 | |
| CardiacMyocytes | 10.45 | |
| Caudatenucleus | 7.5 | |
| Cerebellum | 15.4 | |
| CerebellumPeduncles | 14.95 | |
| CiliaryGanglion | 3.6 | |
| CingulateCortex | 51 | |
| Colorectaladenocarcinoma | 16.2 | |
| DorsalRootGanglion | 4 | |
| FetalThyroid | 4.6 | |
| Fetalbrain | 66.55 | |
| Fetalliver | 4.6 | |
| Fetallung | 4 | |
| GlobusPallidus | 7.55 | |
| Heart | 19.3 | |
| Hypothalamus | 36.1 | |
| Kidney | 3.8 | |
| Leukemia_chronicMyelogenousK-562 | 4.7 | |
| Leukemia_promyelocytic-HL-60 | 4.35 | |
| Leukemialymphoblastic(MOLT-4) | 8.25 | |
| Liver | 19.25 | |
| Lung | 7.55 | |
| Lymphnode | 3.9 | |
| Lymphoma_burkitts(Daudi) | 7 | |
| Lymphoma_burkitts(Raji) | 52.5 | |
| MedullaOblongata | 11 | |
| OccipitalLobe | 21.45 | |
| OlfactoryBulb | 4.05 | |
| Ovary | 3.05 | |
| Pancreas | 3.9 | |
| PancreaticIslet | 4.8 | |
| ParietalLobe | 20.55 | |
| Pituitary | 6.35 | |
| Placenta | 5.05 | |
| Pons | 7.55 | |
| PrefrontalCortex | 79.1 | |
| Prostate | 12.15 | |
| Salivarygland | 3.8 | |
| SkeletalMuscle | 5.85 | |
| Skin | 3.65 | |
| SmoothMuscle | 6 | |
| Spinalcord | 6.3 | |
| SubthalamicNucleus | 17.45 | |
| SuperiorCervicalGanglion | 5.3 | |
| TemporalLobe | 13.45 | |
| Testis | 9.9 | |
| TestisGermCell | 4.35 | |
| TestisIntersitial | 5.75 | |
| TestisLeydigCell | 7.05 | |
| TestisSeminiferousTubule | 6.4 | |
| Thalamus | 50.15 | |
| Thymus | 5.9 | |
| Thyroid | 7.55 | |
| Tongue | 4.75 | |
| Tonsil | 4.75 | |
| Trachea | 4.4 | |
| TrigeminalGanglion | 4.7 | |
| Uterus | 7.2 | |
| UterusCorpus | 5.5 | |
| WholeBlood | 5.55 | |
| Wholebrain | 114.1 | |
| colon | 5.25 | |
| pineal_day | 5.82 | |
| pineal_night | 5.64 | |
| retina | 6.95 | |
| small_intestine | 5.05 | |
- Probe name: CUST_14922_PI416261804
- Donor H0351.2001
- Sex: Male Age: 24 years Race/Ethnicity: African American Handedness: Left
- Tissue Receipt Date: 7/29/2009 Serology: Pass Tissue pH :6.72 Additional Medical Information :History of asthma
- Postmortem Interval: 23 hours (estimated time of death to time that tissue is frozen)
- Toxicology: Positive for atropine and caffeine, at levels usually not toxicologically significant
| Tissue | Expression(mean ± stddev) | Expression Bar |
|---|---|---|
| Amygdala | 4.68 ± 0.68 | ![](../"images/bar_3.png"){kind=small}   |
| Basal Forebrain | 4.28 ± 0.47 | |
| Basal Part of Pons | 5.42 ± 0.64 | |
| Cerebellar Cortex | 5.06 ± 0.62 | |
| Cerebellar Nuclei | 4.1 ± 0.49 | |
| Claustrum | 4.13 ± 0.91 | |
| Epithalamus | 4.14 ± 1.11 | |
| Frontal Lobe | 4.98 ± 0.71 | |
| Globus Pallidus | 2.89 ± 0.83 | |
| Hypothalamus | 4.56 ± 0.79 | |
| Insula | 4.97 ± 0.48 | |
| Limbic Lobe | 4.68 ± 0.73 | |
| Mesencephalon | 4.47 ± 0.73 | |
| Myelencephalon | 4.57 ± 0.86 | |
| Occipital Lobe | 4.2 ± 0.76 | |
| Parietal Lobe | 4.69 ± 0.71 | |
| Pontine Tegmentum | 4.48 ± 0.71 | |
| Striatum | 3.53 ± 0.84 | |
| Subthalamus | 4.66 ± 0.43 | |
| Temporal Lobe | 4.99 ± 0.57 | |
| Thalamus | 4.6 ± 0.66 | |
| White Matter | 2.86 ± 0.73 | |
Mouse Brain ISH 
| Gene Symbol | Brain Structure ID | Brain Structure Name | Express Desity/Level (Meatured by ISH) | Express Bar |
|---|---|---|---|---|
| Fsd1 | CB | Cerebellum | 22.88 | |
| 25.19 | | |||
| Fsd1 | CTX | Cerebral cortex | 71.98 | |
| 53.11 | | |||
| Fsd1 | HIP | Hippocampal region | 28.12 | |
| 29.08 | | |||
| Fsd1 | HPF | Hippocampal formation | 37.31 | |
| 33.53 | | |||
| Fsd1 | HY | Hypothalamus | 56.72 | |
| 44.74 | | |||
| Fsd1 | LSX | Lateral septal complex | 51.83 | |
| 37.3 | | |||
| Fsd1 | MB | Midbrain | 56.82 | |
| 51.41 | | |||
| Fsd1 | MY | Medulla | 57.53 | |
| 67.67 | | |||
| Fsd1 | OLF | Olfactory bulb | 46.08 | |
| 35.37 | | |||
| Fsd1 | P | Pons | 54.08 | |
| 59.41 | | |||
| Fsd1 | PAL | Pallidum | 58.49 | |
| 53.29 | | |||
| Fsd1 | RHP | Retrohippocampal region | 57.75 | |
| 43.39 | | |||
| Fsd1 | sAMY | Striatum-like amygdalar nuclei | 34.12 | |
| 23.81 | | |||
| Fsd1 | STR | Striatum | 39.64 | |
| 27.58 | | |||
| Fsd1 | STRd | Striatum dorsal region | 35.82 | |
| 24.95 | | |||
| Fsd1 | STRv | Striatum ventral region | 50.8 | |
| 33.94 | | |||
| Fsd1 | TH | Thalamus | 71.93 | |
| 59.39 | |
| Peptide Name | Peptide Lengh | Peptide Start | Peptide End | Peptide Sequence | Source |
|---|---|---|---|---|---|
| PAp00496436 | 20 | 252 | 271 | AVAGEFSEPVTLETPAFMFR | Peptide Atlas |