Annotation Detail for FYCO1
Basic Information Top
| Gene Symbol: | FYCO1 ( DKFZp779K1152,FLJ13335,MGC126517,MGC126519,RUFY3,ZFYVE7 ) |
|---|---|
| Gene Full Name: | FYVE and coiled-coil domain containing 1 |
| Band: | 3p21.31 |
| Quick Links | Entrez ID:79443; OMIM: 607182; Uniprot ID:FYCO1_HUMAN; ENSEMBL ID: ENSG00000163820; HGNC ID: 14673 |
| Relate to Another Database: | SFARIGene; denovo-db |
Unigene EST- Microarray Platform: GeneAtlas U133A, gcrma
- Affymatrix Probe ID: 218204_s_at
| Cell line | Expression level | Expression bar |
|---|---|---|
 | ||
| 721_B_lymphoblasts | 17.3 |  |
| Adipocyte | 38.7 | |
| AdrenalCortex | 23.6 | |
| Adrenalgland | 13.5 | |
| Amygdala | 11 | |
| Appendix | 24.95 | |
| AtrioventricularNode | 12.45 | |
| BDCA4+_DentriticCells | 41.95 | |
| Bonemarrow | 14.45 | |
| BronchialEpithelialCells | 16.15 | |
| CD105+_Endothelial | 19.9 | |
| CD14+_Monocytes | 15.45 | |
| CD19+_BCells(neg._sel.) | 14.95 | |
| CD33+_Myeloid | 17.75 | |
| CD34+ | 19.45 | |
| CD4+_Tcells | 31.85 | |
| CD56+_NKCells | 28.55 | |
| CD71+_EarlyErythroid | 13.5 | |
| CD8+_Tcells | 54.3 |  |
| CardiacMyocytes | 22.1 | |
| Caudatenucleus | 11.45 | |
| Cerebellum | 10.55 | |
| CerebellumPeduncles | 15.6 | |
| CiliaryGanglion | 13.3 | |
| CingulateCortex | 14.3 | |
| Colorectaladenocarcinoma | 28.4 | |
| DorsalRootGanglion | 11.75 | |
| FetalThyroid | 41.5 | |
| Fetalbrain | 12.95 | |
| Fetalliver | 12.7 | |
| Fetallung | 12.85 | |
| GlobusPallidus | 11.25 | |
| Heart | 28.05 | |
| Hypothalamus | 15.15 | |
| Kidney | 16.1 | |
| Leukemia_chronicMyelogenousK-562 | 13.75 | |
| Leukemia_promyelocytic-HL-60 | 13.75 | |
| Leukemialymphoblastic(MOLT-4) | 11.4 | |
| Liver | 19.8 | |
| Lung | 42.4 | |
| Lymphnode | 23.55 | |
| Lymphoma_burkitts(Daudi) | 17.45 | |
| Lymphoma_burkitts(Raji) | 21.45 | |
| MedullaOblongata | 11.5 | |
| OccipitalLobe | 11.7 | |
| OlfactoryBulb | 17.25 | |
| Ovary | 11.4 | |
| Pancreas | 12.8 | |
| PancreaticIslet | 28 | |
| ParietalLobe | 14.2 | |
| Pituitary | 17.1 | |
| Placenta | 16.4 | |
| Pons | 13.4 | |
| PrefrontalCortex | 16.45 | |
| Prostate | 32.3 | |
| Salivarygland | 12.95 | |
| SkeletalMuscle | 92 | |
| Skin | 12.1 | |
| SmoothMuscle | 30.7 | |
| Spinalcord | 28.2 | |
| SubthalamicNucleus | 17.3 | |
| SuperiorCervicalGanglion | 19.1 | |
| TemporalLobe | 14.15 | |
| Testis | 14.1 | |
| TestisGermCell | 13.25 | |
| TestisIntersitial | 12.3 | |
| TestisLeydigCell | 13.15 | |
| TestisSeminiferousTubule | 11.25 | |
| Thalamus | 13.8 | |
| Thymus | 16.35 | |
| Thyroid | 104.75 | |
| Tongue | 183.85 | |
| Tonsil | 14.3 | |
| Trachea | 22.2 | |
| TrigeminalGanglion | 15.55 | |
| Uterus | 95.8 | |
| UterusCorpus | 30.25 | |
| WholeBlood | 15.8 | |
| Wholebrain | 8.15 |  |
| colon | 33.95 | |
| pineal_day | 96.94 | |
| pineal_night | 73.74 | |
| retina | 108.55 | |
| small_intestine | 25.55 | |
- Probe name: CUST_13506_PI416261804
- Donor H0351.2001
- Sex: Male Age: 24 years Race/Ethnicity: African American Handedness: Left
- Tissue Receipt Date: 7/29/2009 Serology: Pass Tissue pH :6.72 Additional Medical Information :History of asthma
- Postmortem Interval: 23 hours (estimated time of death to time that tissue is frozen)
- Toxicology: Positive for atropine and caffeine, at levels usually not toxicologically significant
| Tissue | Expression(mean ± stddev) | Expression Bar |
|---|---|---|
| Amygdala | 4.04 ± 0.88 | ![](../"images/bar_3.png"){kind=small}   |
| Basal Forebrain | 3.88 ± 0.84 | |
| Basal Part of Pons | 3.65 ± 0.59 | |
| Cerebellar Cortex | 3.3 ± 0.48 | |
| Cerebellar Nuclei | 4.34 ± 0.55 | |
| Claustrum | 4.53 ± 0.71 | |
| Epithalamus | 3.89 ± 0.52 | |
| Frontal Lobe | 3.85 ± 0.73 | |
| Globus Pallidus | 5.33 ± 0.23 | |
| Hypothalamus | 3.68 ± 0.57 | |
| Insula | 3.68 ± 0.82 | |
| Limbic Lobe | 3.91 ± 0.76 | |
| Mesencephalon | 4.11 ± 0.81 | |
| Myelencephalon | 4.05 ± 0.74 | |
| Occipital Lobe | 3.99 ± 0.61 | |
| Parietal Lobe | 3.92 ± 0.78 | |
| Pontine Tegmentum | 4.03 ± 0.79 | |
| Striatum | 4.47 ± 0.62 | |
| Subthalamus | 3.99 ± 0.95 | |
| Temporal Lobe | 3.85 ± 0.74 | |
| Thalamus | 4.13 ± 0.47 | |
| White Matter | 5.54 ± 0.52 | |
Mouse Brain ISH 
| Gene Symbol | Brain Structure ID | Brain Structure Name | Express Desity/Level (Meatured by ISH) | Express Bar |
|---|---|---|---|---|
| Fyco1 | CB | Cerebellum | 12.25 | |
| 12.64 | | |||
| Fyco1 | CTX | Cerebral cortex | 11.72 | |
| 7.43 | | |||
| Fyco1 | HIP | Hippocampal region | 24.23 | |
| 32.85 | | |||
| Fyco1 | HPF | Hippocampal formation | 22.75 | |
| 25.09 | | |||
| Fyco1 | HY | Hypothalamus | 2.84 | |
| 1.89 | | |||
| Fyco1 | LSX | Lateral septal complex | 3.78 | |
| 2.36 | | |||
| Fyco1 | MB | Midbrain | 4.92 | |
| 6.39 | | |||
| Fyco1 | MY | Medulla | 7.8 | |
| 6.53 | | |||
| Fyco1 | OLF | Olfactory bulb | 16.39 | |
| 11.51 | | |||
| Fyco1 | P | Pons | 3.82 | |
| 3.84 | | |||
| Fyco1 | PAL | Pallidum | 3.05 | |
| 2.11 | | |||
| Fyco1 | RHP | Retrohippocampal region | 19.85 | |
| 12.63 | | |||
| Fyco1 | sAMY | Striatum-like amygdalar nuclei | 18.28 | |
| 10.96 | | |||
| Fyco1 | STR | Striatum | 10.64 | |
| 6.34 | | |||
| Fyco1 | STRd | Striatum dorsal region | 11.31 | |
| 6.87 | | |||
| Fyco1 | STRv | Striatum ventral region | 6.57 | |
| 3.48 | | |||
| Fyco1 | TH | Thalamus | 7.67 | |
| 5.58 | |
| Peptide Name | Peptide Lengh | Peptide Start | Peptide End | Peptide Sequence | Source |
|---|---|---|---|---|---|
| FYCO1_HUMAN_676 | 10 | 676 | 685 | QMEASLLAVR | PRIDE |