AutismKB 2.0

Annotation Detail for GCC1


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Basic Information Top
Gene Symbol:GCC1 ( FLJ22035,GCC1P,GCC88,MGC20706 )
Gene Full Name: GRIP and coiled-coil domain containing 1
Band: 7q32.1
Quick LinksEntrez ID:79571; OMIM: 607418; Uniprot ID:GCC1_HUMAN; ENSEMBL ID: ENSG00000179562; HGNC ID: 19095
Relate to Another Database: SFARIGene; denovo-db
Unigene EST Top
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
embryoid body2 / 7076128
blastocyst0 / 623190 
fetus13 / 56401223
neonate0 / 310970 
infant0 / 236200 
juvenile3 / 5555653
adult78 / 193912140
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
adrenal tumor0 / 127940 
bladder carcinoma0 / 174750 
breast (mammary gland) tumor2 / 9417821
cervical tumor1 / 3436629
chondrosarcoma5 / 8282360
colorectal tumor10 / 11424687
esophageal tumor0 / 172900 
gastrointestinal tumor1 / 1193698
germ cell tumor4 / 26384515
glioma0 / 1068830 
head and neck tumor2 / 13630214
kidney tumor2 / 6895929
leukemia34 / 95842354
liver tumor6 / 9635962
lung tumor1 / 1031279
lymphoma3 / 7175541
non-neoplasia0 / 972500 
normal56 / 336030716
ovarian tumor4 / 7668252
pancreatic tumor0 / 1046160 
primitive neuroectodermal tumor of the CNS1 / 1256807
prostate cancer0 / 1026800 
retinoblastoma0 / 463560 
skin tumor4 / 12494932
soft tissue/muscle tissue tumor2 / 12519115
uterine tumor5 / 9025755
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
adipose tissue2 / 13106152
adrenal gland0 / 331970 
ascites0 / 400150 
bladder1 / 2975733
blood2 / 12347816
bone2 / 7165527
bone marrow30 / 48801614
brain11 / 11009899
cervix1 / 4817120
connective tissue3 / 14925520
ear0 / 162120 
embryonic tissue2 / 2157229
esophagus0 / 202090 
eye2 / 2110549
heart2 / 8962622
intestine12 / 23447251
kidney5 / 21177723
larynx1 / 2414541
liver7 / 20774333
lung11 / 33697432
lymph2 / 4427045
lymph node6 / 9161065
mammary gland5 / 15327132
mouth0 / 670520 
muscle0 / 1077150 
nerve0 / 157680 
ovary4 / 10205139
pancreas0 / 2148120 
parathyroid0 / 205390 
pharynx0 / 413280 
pituitary gland0 / 165850 
placenta2 / 2808257
prostate0 / 1893450 
salivary gland0 / 201550 
skin5 / 21057423
spleen4 / 5395274
stomach1 / 9661910
testis5 / 33044215
thymus0 / 811310 
thyroid1 / 4747321
tonsil0 / 169990 
trachea1 / 5241319
umbilical cord0 / 136800 
uterus6 / 23287825
vascular0 / 517800 
Microarray in BioGPS Top
Select probe  
  • Microarray Platform: GeneAtlas U133A, gcrma
  • Affymatrix Probe ID: 218912_at
Cell line Expression level Expression bar
721_B_lymphoblasts12.4
Adipocyte9.65
AdrenalCortex10.05
Adrenalgland8.1
Amygdala10.4
Appendix9.75
AtrioventricularNode8.8
BDCA4+_DentriticCells10.45
Bonemarrow9.55
BronchialEpithelialCells10.9
CD105+_Endothelial9.9
CD14+_Monocytes10.1
CD19+_BCells(neg._sel.)10.65
CD33+_Myeloid12.45
CD34+12.4
CD4+_Tcells11.65
CD56+_NKCells11.7
CD71+_EarlyErythroid9.15
CD8+_Tcells9.5
CardiacMyocytes13.4
Caudatenucleus8.7
Cerebellum8.85
CerebellumPeduncles11.95
CiliaryGanglion8
CingulateCortex11.1
Colorectaladenocarcinoma14.25
DorsalRootGanglion9.1
FetalThyroid9.5
Fetalbrain9.9
Fetalliver8.45
Fetallung8.05
GlobusPallidus7.1
Heart12.8
Hypothalamus9.5
Kidney7.85
Leukemia_chronicMyelogenousK-5628.5
Leukemia_promyelocytic-HL-608
Leukemialymphoblastic(MOLT-4)11.05
Liver14.9
Lung10.95
Lymphnode8.9
Lymphoma_burkitts(Daudi)13
Lymphoma_burkitts(Raji)13.5
MedullaOblongata9.2
OccipitalLobe8.8
OlfactoryBulb7.7
Ovary6.4
Pancreas7.85
PancreaticIslet10.7
ParietalLobe10.2
Pituitary11.45
Placenta13.6
Pons9.8
PrefrontalCortex11.8
Prostate12.95
Salivarygland7.75
SkeletalMuscle11.25
Skin7.5
SmoothMuscle10.65
Spinalcord12.1
SubthalamicNucleus8.85
SuperiorCervicalGanglion15.8
TemporalLobe8.9
Testis15.6
TestisGermCell11.6
TestisIntersitial9.75
TestisLeydigCell9.65
TestisSeminiferousTubule8.35
Thalamus9.9
Thymus9.2
Thyroid12.4
Tongue11.2
Tonsil9.5
Trachea8.25
TrigeminalGanglion10.05
Uterus8.1
UterusCorpus8.7
WholeBlood18.35
Wholebrain8.35
colon9.8
pineal_day11.72
pineal_night11.98
retina12.6
small_intestine9.45
Allen Brain Atlas Top
Human Whole Brain Microarrayview in Allen Brain Atlas
  • Probe id     Donor id      
  • Probe name: A_23_P71094
  • Donor H0351.2001
  • Sex: Male     Age: 24 years     Race/Ethnicity: African American     Handedness: Left
  • Tissue Receipt Date: 7/29/2009     Serology: Pass      Tissue pH :6.72     Additional Medical Information :History of asthma
  • Postmortem Interval: 23 hours (estimated time of death to time that tissue is frozen)
  • Toxicology: Positive for atropine and caffeine, at levels usually not toxicologically significant
Tissue Expression(mean ± stddev) Expression Bar
Amygdala4.85 ± 0.47
Basal Forebrain4.95 ± 0.21
Basal Part of Pons5.01 ± 0.26
Cerebellar Cortex5.25 ± 0.32
Cerebellar Nuclei4.91 ± 0.43
Claustrum4.5 ± 0.75
Epithalamus4.91 ± 0.36
Frontal Lobe4.95 ± 0.45
Globus Pallidus4.98 ± 0.29
Hypothalamus5.14 ± 0.59
Insula4.89 ± 0.26
Limbic Lobe4.78 ± 0.45
Mesencephalon4.91 ± 0.51
Myelencephalon4.92 ± 0.48
Occipital Lobe4.89 ± 0.34
Parietal Lobe4.91 ± 0.44
Pontine Tegmentum4.94 ± 0.44
Striatum4.84 ± 0.45
Subthalamus4.87 ± 0.11
Temporal Lobe4.91 ± 0.36
Thalamus5.01 ± 0.42
White Matter5.01 ± 0.51
Mouse Brain ISH
Peptide Top
Peptide Name Peptide Lengh Peptide Start Peptide End Peptide Sequence Source
GCC1_HUMAN_332 12 332 343 SHFQAQLQQEMR PRIDE
PAp00394160 13 516 528 ELEAAQEQLAELK Peptide Atlas

Simple Query:


  (e.g. CHD8)

Syndromic Genes

Non-syndromic Genes

AutismKB Statistics

  • Studies: 1,036
  • Genes: 1,379
  • CNVs/SVs: 5,420
  • SNVs/Indels: 11,669
  • de novo Mutations: 5,669
  • Mosaics: 789
  • Linkage Regions: 172
  • Paper Collected: 6/30/2018
  • Last Update: 8/26/2018


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