Annotation Detail for TMCO7
Basic Information Top
| Gene Symbol: | TMCO7 ( FLJ12688,KIAA1746 ) |
|---|---|
| Gene Full Name: | transmembrane and coiled-coil domains 7 |
| Band: | 16q22.1 |
| Quick Links | Entrez ID:79613; OMIM: NA; Uniprot ID:TMCO7_HUMAN; ENSEMBL ID: ENSG00000103047; HGNC ID: |
| Relate to Another Database: | SFARIGene; denovo-db |
- Unigene ID: Hs.13526
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
 | |||
| embryoid body | 2 / 70761 | 28 |  |
| blastocyst | 1 / 62319 | 16 | |
| fetus | 6 / 564012 | 10 |  |
| neonate | 0 / 31097 | 0 | |
| infant | 4 / 23620 | 169 |  |
| juvenile | 0 / 55556 | 0 | |
| adult | 24 / 1939121 | 12 | |
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
| |||
| adrenal tumor | 1 / 12794 | 78 | |
| bladder carcinoma | 0 / 17475 | 0 | |
| breast (mammary gland) tumor | 0 / 94178 | 0 | |
| cervical tumor | 0 / 34366 | 0 | |
| chondrosarcoma | 3 / 82823 | 36 | |
| colorectal tumor | 1 / 114246 | 8 | |
| esophageal tumor | 0 / 17290 | 0 | |
| gastrointestinal tumor | 2 / 119369 | 16 | |
| germ cell tumor | 8 / 263845 | 30 | |
| glioma | 2 / 106883 | 18 | |
| head and neck tumor | 3 / 136302 | 22 | |
| kidney tumor | 1 / 68959 | 14 | |
| leukemia | 1 / 95842 | 10 | |
| liver tumor | 2 / 96359 | 20 | |
| lung tumor | 0 / 103127 | 0 | |
| lymphoma | 0 / 71755 | 0 | |
| non-neoplasia | 0 / 97250 | 0 | |
| normal | 55 / 3360307 | 16 | |
| ovarian tumor | 1 / 76682 | 13 | |
| pancreatic tumor | 1 / 104616 | 9 | |
| primitive neuroectodermal tumor of the CNS | 3 / 125680 | 23 | |
| prostate cancer | 0 / 102680 | 0 | |
| retinoblastoma | 0 / 46356 | 0 | |
| skin tumor | 2 / 124949 | 16 | |
| soft tissue/muscle tissue tumor | 6 / 125191 | 47 | |
| uterine tumor | 0 / 90257 | 0 |
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
| |||
| adipose tissue | 0 / 13106 | 0 | |
| adrenal gland | 1 / 33197 | 30 | |
| ascites | 1 / 40015 | 24 | |
| bladder | 0 / 29757 | 0 | |
| blood | 2 / 123478 | 16 | |
| bone | 3 / 71655 | 41 | |
| bone marrow | 1 / 48801 | 20 | |
| brain | 15 / 1100989 | 13 | |
| cervix | 0 / 48171 | 0 | |
| connective tissue | 3 / 149255 | 20 | |
| ear | 0 / 16212 | 0 | |
| embryonic tissue | 4 / 215722 | 18 | |
| esophagus | 0 / 20209 | 0 | |
| eye | 0 / 211054 | 0 | |
| heart | 1 / 89626 | 11 | |
| intestine | 7 / 234472 | 29 | |
| kidney | 4 / 211777 | 18 | |
| larynx | 0 / 24145 | 0 | |
| liver | 5 / 207743 | 24 | |
| lung | 3 / 336974 | 8 | |
| lymph | 0 / 44270 | 0 | |
| lymph node | 1 / 91610 | 10 | |
| mammary gland | 0 / 153271 | 0 | |
| mouth | 3 / 67052 | 44 | |
| muscle | 5 / 107715 | 46 | |
| nerve | 1 / 15768 | 63 | |
| ovary | 1 / 102051 | 9 | |
| pancreas | 1 / 214812 | 4 | |
| parathyroid | 0 / 20539 | 0 | |
| pharynx | 0 / 41328 | 0 | |
| pituitary gland | 0 / 16585 | 0 | |
| placenta | 1 / 280825 | 3 | |
| prostate | 6 / 189345 | 31 | |
| salivary gland | 0 / 20155 | 0 | |
| skin | 2 / 210574 | 9 | |
| spleen | 0 / 53952 | 0 | |
| stomach | 1 / 96619 | 10 | |
| testis | 11 / 330442 | 33 | |
| thymus | 1 / 81131 | 12 | |
| thyroid | 0 / 47473 | 0 | |
| tonsil | 0 / 16999 | 0 | |
| trachea | 0 / 52413 | 0 | |
| umbilical cord | 0 / 13680 | 0 | |
| uterus | 0 / 232878 | 0 | |
| vascular | 0 / 51780 | 0 |
Microarray in - Probe name: A_24_P256579
- Donor H0351.2001
- Sex: Male Age: 24 years Race/Ethnicity: African American Handedness: Left
- Tissue Receipt Date: 7/29/2009 Serology: Pass Tissue pH :6.72 Additional Medical Information :History of asthma
- Postmortem Interval: 23 hours (estimated time of death to time that tissue is frozen)
- Toxicology: Positive for atropine and caffeine, at levels usually not toxicologically significant
| Tissue | Expression(mean ± stddev) | Expression Bar |
|---|---|---|
| Amygdala | 4.07 ± 0.76 | ![](../"images/bar_3.png"){kind=small}   |
| Basal Forebrain | 3.61 ± 0.37 | |
| Basal Part of Pons | 3.88 ± 0.79 | |
| Cerebellar Cortex | 3.97 ± 0.57 | |
| Cerebellar Nuclei | 4.12 ± 0.6 | |
| Claustrum | 3.69 ± 0.7 | |
| Epithalamus | 3.8 ± 0.51 | |
| Frontal Lobe | 4.02 ± 0.53 | |
| Globus Pallidus | 4.1 ± 0.46 | |
| Hypothalamus | 3.97 ± 0.5 | |
| Insula | 4.18 ± 0.47 | |
| Limbic Lobe | 3.87 ± 0.48 | |
| Mesencephalon | 3.95 ± 0.59 | |
| Myelencephalon | 3.92 ± 0.58 | |
| Occipital Lobe | 3.77 ± 0.57 | |
| Parietal Lobe | 3.87 ± 0.49 | |
| Pontine Tegmentum | 3.95 ± 0.55 | |
| Striatum | 3.83 ± 0.76 | |
| Subthalamus | 4.26 ± 0.26 | |
| Temporal Lobe | 4.06 ± 0.48 | |
| Thalamus | 3.85 ± 0.49 | |
| White Matter | 4.06 ± 0.53 | |
Mouse Brain ISH 
| Gene Symbol | Brain Structure ID | Brain Structure Name | Express Desity/Level (Meatured by ISH) | Express Bar |
|---|---|---|---|---|
| AW413431 | CB | Cerebellum | 8.04 | |
| 10.17 | | |||
| AW413431 | CTX | Cerebral cortex | 3.99 | |
| 3.05 | | |||
| AW413431 | HIP | Hippocampal region | 3.96 | |
| 3.93 | | |||
| AW413431 | HPF | Hippocampal formation | 2.87 | |
| 2.62 | | |||
| AW413431 | HY | Hypothalamus | 1.53 | |
| 1.1 | | |||
| AW413431 | LSX | Lateral septal complex | 0.8 | |
| 0.56 | | |||
| AW413431 | MB | Midbrain | 4.04 | |
| 3.84 | | |||
| AW413431 | MY | Medulla | 7.81 | |
| 8.04 | | |||
| AW413431 | OLF | Olfactory bulb | 4.7 | |
| 4.41 | | |||
| AW413431 | P | Pons | 5.07 | |
| 5.95 | | |||
| AW413431 | PAL | Pallidum | 2.03 | |
| 1.63 | | |||
| AW413431 | RHP | Retrohippocampal region | 0.88 | |
| 0.65 | | |||
| AW413431 | sAMY | Striatum-like amygdalar nuclei | 1.12 | |
| 1.34 | | |||
| AW413431 | STR | Striatum | 1.64 | |
| 1.3 | | |||
| AW413431 | STRd | Striatum dorsal region | 1.63 | |
| 1.34 | | |||
| AW413431 | STRv | Striatum ventral region | 2.3 | |
| 1.49 | | |||
| AW413431 | TH | Thalamus | 5.74 | |
| 4.86 | |