AutismKB 2.0

Annotation Detail for SNRNP25


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Basic Information Top
Gene Symbol:SNRNP25 ( C16orf33,FLJ22940 )
Gene Full Name: small nuclear ribonucleoprotein 25kDa (U11/U12)
Band: 16p13.3
Quick LinksEntrez ID:79622; OMIM: NA; Uniprot ID:SNR25_HUMAN; ENSEMBL ID: ENSG00000161981; HGNC ID: 14161
Relate to Another Database: SFARIGene; denovo-db
Unigene EST Top
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
embryoid body1 / 7076114
blastocyst0 / 623190 
fetus12 / 56401221
neonate0 / 310970 
infant0 / 236200 
juvenile3 / 5555653
adult72 / 193912137
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
adrenal tumor0 / 127940 
bladder carcinoma0 / 174750 
breast (mammary gland) tumor1 / 9417810
cervical tumor1 / 3436629
chondrosarcoma4 / 8282348
colorectal tumor6 / 11424652
esophageal tumor0 / 172900 
gastrointestinal tumor8 / 11936967
germ cell tumor7 / 26384526
glioma9 / 10688384
head and neck tumor4 / 13630229
kidney tumor5 / 6895972
leukemia5 / 9584252
liver tumor6 / 9635962
lung tumor5 / 10312748
lymphoma4 / 7175555
non-neoplasia0 / 972500 
normal87 / 336030725
ovarian tumor4 / 7668252
pancreatic tumor7 / 10461666
primitive neuroectodermal tumor of the CNS10 / 12568079
prostate cancer4 / 10268038
retinoblastoma3 / 4635664
skin tumor1 / 1249498
soft tissue/muscle tissue tumor6 / 12519147
uterine tumor3 / 9025733
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
adipose tissue0 / 131060 
adrenal gland2 / 3319760
ascites4 / 4001599
bladder0 / 297570 
blood6 / 12347848
bone6 / 7165583
bone marrow3 / 4880161
brain29 / 110098926
cervix3 / 4817162
connective tissue0 / 1492550 
ear0 / 162120 
embryonic tissue3 / 21572213
esophagus0 / 202090 
eye13 / 21105461
heart4 / 8962644
intestine12 / 23447251
kidney9 / 21177742
larynx1 / 2414541
liver11 / 20774352
lung11 / 33697432
lymph4 / 4427090
lymph node2 / 9161021
mammary gland4 / 15327126
mouth1 / 6705214
muscle8 / 10771574
nerve0 / 157680 
ovary7 / 10205168
pancreas13 / 21481260
parathyroid0 / 205390 
pharynx0 / 413280 
pituitary gland1 / 1658560
placenta2 / 2808257
prostate6 / 18934531
salivary gland0 / 201550 
skin2 / 2105749
spleen0 / 539520 
stomach2 / 9661920
testis2 / 3304426
thymus0 / 811310 
thyroid2 / 4747342
tonsil1 / 1699958
trachea0 / 524130 
umbilical cord0 / 136800 
uterus11 / 23287847
vascular0 / 517800 
Microarray in BioGPS Top
Select probe  
  • Microarray Platform: GeneAtlas U133A, gcrma
  • Affymatrix Probe ID: 218493_at
Cell line Expression level Expression bar
721_B_lymphoblasts858.1
Adipocyte20.6
AdrenalCortex18.65
Adrenalgland17.65
Amygdala148.85
Appendix18.9
AtrioventricularNode13.6
BDCA4+_DentriticCells587.8
Bonemarrow19.55
BronchialEpithelialCells61.35
CD105+_Endothelial695.55
CD14+_Monocytes53.45
CD19+_BCells(neg._sel.)365.7
CD33+_Myeloid129.15
CD34+455.55
CD4+_Tcells20.6
CD56+_NKCells67.1
CD71+_EarlyErythroid758.7
CD8+_Tcells18.25
CardiacMyocytes59.95
Caudatenucleus62.55
Cerebellum101.65
CerebellumPeduncles145.5
CiliaryGanglion12.6
CingulateCortex175.3
Colorectaladenocarcinoma29.8
DorsalRootGanglion13.35
FetalThyroid26.45
Fetalbrain21.75
Fetalliver24.05
Fetallung16.05
GlobusPallidus57.05
Heart587.65
Hypothalamus164.3
Kidney22
Leukemia_chronicMyelogenousK-562111.25
Leukemia_promyelocytic-HL-60155.65
Leukemialymphoblastic(MOLT-4)143.2
Liver321.65
Lung25.05
Lymphnode19.35
Lymphoma_burkitts(Daudi)551.75
Lymphoma_burkitts(Raji)28.05
MedullaOblongata121.9
OccipitalLobe140.95
OlfactoryBulb15.55
Ovary12.2
Pancreas15.65
PancreaticIslet19.75
ParietalLobe88.6
Pituitary25.6
Placenta6.75
Pons33.6
PrefrontalCortex245.3
Prostate60.35
Salivarygland18.15
SkeletalMuscle42.7
Skin12.6
SmoothMuscle51.15
Spinalcord70.55
SubthalamicNucleus166.85
SuperiorCervicalGanglion19.15
TemporalLobe207.5
Testis24.25
TestisGermCell17.3
TestisIntersitial15.55
TestisLeydigCell18.35
TestisSeminiferousTubule16.15
Thalamus267.35
Thymus76.9
Thyroid46.1
Tongue26.95
Tonsil27.85
Trachea16.15
TrigeminalGanglion19.65
Uterus20.45
UterusCorpus17.95
WholeBlood31.6
Wholebrain596.95
colon20.95
pineal_day51.74
pineal_night47.32
retina34.325
small_intestine19.85
Allen Brain Atlas Top
Human Whole Brain Microarrayview in Allen Brain Atlas
  • Probe id     Donor id      
  • Probe name: CUST_9024_PI416261804
  • Donor H0351.2001
  • Sex: Male     Age: 24 years     Race/Ethnicity: African American     Handedness: Left
  • Tissue Receipt Date: 7/29/2009     Serology: Pass      Tissue pH :6.72     Additional Medical Information :History of asthma
  • Postmortem Interval: 23 hours (estimated time of death to time that tissue is frozen)
  • Toxicology: Positive for atropine and caffeine, at levels usually not toxicologically significant
Tissue Expression(mean ± stddev) Expression Bar
Amygdala7.5 ± 0.37
Basal Forebrain7.3 ± 0.28
Basal Part of Pons7.89 ± 0.25
Cerebellar Cortex7.44 ± 0.3
Cerebellar Nuclei8.05 ± 0.17
Claustrum7.86 ± 0.36
Epithalamus6.88 ± 0.35
Frontal Lobe7.62 ± 0.33
Globus Pallidus7.63 ± 0.32
Hypothalamus7.26 ± 0.3
Insula7.37 ± 0.46
Limbic Lobe7.33 ± 0.43
Mesencephalon7.41 ± 0.42
Myelencephalon7.39 ± 0.46
Occipital Lobe6.9 ± 0.42
Parietal Lobe7.54 ± 0.41
Pontine Tegmentum7.35 ± 0.47
Striatum6.74 ± 0.38
Subthalamus7.69 ± 0.31
Temporal Lobe7.52 ± 0.34
Thalamus7.25 ± 0.38
White Matter6.56 ± 0.27
Mouse Brain ISH
Gene Symbol Brain Structure ID Brain Structure Name Express Desity/Level (Meatured by ISH) Express Bar
3300001G02RikCBCerebellum29.11
40.31
3300001G02RikCTXCerebral cortex45.87
36.17
3300001G02RikHIPHippocampal region36.01
46.08
3300001G02RikHPFHippocampal formation39.81
42.82
3300001G02RikHYHypothalamus22.7
17.72
3300001G02RikLSXLateral septal complex20.77
16.27
3300001G02RikMBMidbrain24.05
26.58
3300001G02RikMYMedulla24.77
33.52
3300001G02RikOLFOlfactory bulb41.13
33.69
3300001G02RikPPons34.62
42.52
3300001G02RikPALPallidum20.06
19.43
3300001G02RikRHPRetrohippocampal region48.61
38.94
3300001G02RiksAMYStriatum-like amygdalar nuclei50.72
35.3
3300001G02RikSTRStriatum18.9
13.63
3300001G02RikSTRdStriatum dorsal region13.38
9.58
3300001G02RikSTRvStriatum ventral region21.41
15.23
3300001G02RikTHThalamus35.05
29.5
Peptide Top

Simple Query:


  (e.g. CHD8)

Syndromic Genes

Non-syndromic Genes

AutismKB Statistics

  • Studies: 1,036
  • Genes: 1,379
  • CNVs/SVs: 5,420
  • SNVs/Indels: 11,669
  • de novo Mutations: 5,669
  • Mosaics: 789
  • Linkage Regions: 172
  • Paper Collected: 6/30/2018
  • Last Update: 8/26/2018


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