Annotation Detail for SH3TC2
Basic Information Top
| Gene Symbol: | SH3TC2 ( CMT4C,FLJ13605,KIAA1985,MNMN ) |
|---|---|
| Gene Full Name: | SH3 domain and tetratricopeptide repeats 2 |
| Band: | 5q32 |
| Quick Links | Entrez ID:79628; OMIM: 608206; Uniprot ID:S3TC2_HUMAN; ENSEMBL ID: ENSG00000169247; HGNC ID: 29427 |
| Relate to Another Database: | SFARIGene; denovo-db |
- Unigene ID: Hs.483784
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
 | |||
| embryoid body | 0 / 70761 | 0 | |
| blastocyst | 0 / 62319 | 0 | |
| fetus | 19 / 564012 | 33 |  |
| neonate | 0 / 31097 | 0 | |
| infant | 0 / 23620 | 0 | |
| juvenile | 0 / 55556 | 0 | |
| adult | 75 / 1939121 | 38 | |
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
| |||
| adrenal tumor | 0 / 12794 | 0 | |
| bladder carcinoma | 0 / 17475 | 0 | |
| breast (mammary gland) tumor | 0 / 94178 | 0 | |
| cervical tumor | 0 / 34366 | 0 | |
| chondrosarcoma | 0 / 82823 | 0 | |
| colorectal tumor | 0 / 114246 | 0 | |
| esophageal tumor | 0 / 17290 | 0 | |
| gastrointestinal tumor | 0 / 119369 | 0 | |
| germ cell tumor | 8 / 263845 | 30 | |
| glioma | 1 / 106883 | 9 |  |
| head and neck tumor | 0 / 136302 | 0 | |
| kidney tumor | 0 / 68959 | 0 | |
| leukemia | 1 / 95842 | 10 | |
| liver tumor | 1 / 96359 | 10 | |
| lung tumor | 0 / 103127 | 0 | |
| lymphoma | 0 / 71755 | 0 | |
| non-neoplasia | 13 / 97250 | 133 |  |
| normal | 120 / 3360307 | 35 | |
| ovarian tumor | 0 / 76682 | 0 | |
| pancreatic tumor | 0 / 104616 | 0 | |
| primitive neuroectodermal tumor of the CNS | 0 / 125680 | 0 | |
| prostate cancer | 0 / 102680 | 0 | |
| retinoblastoma | 0 / 46356 | 0 | |
| skin tumor | 9 / 124949 | 72 | |
| soft tissue/muscle tissue tumor | 0 / 125191 | 0 | |
| uterine tumor | 0 / 90257 | 0 |
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
| |||
| adipose tissue | 0 / 13106 | 0 | |
| adrenal gland | 0 / 33197 | 0 | |
| ascites | 0 / 40015 | 0 | |
| bladder | 0 / 29757 | 0 | |
| blood | 1 / 123478 | 8 | |
| bone | 0 / 71655 | 0 | |
| bone marrow | 6 / 48801 | 122 | |
| brain | 46 / 1100989 | 41 | |
| cervix | 0 / 48171 | 0 | |
| connective tissue | 0 / 149255 | 0 | |
| ear | 2 / 16212 | 123 | |
| embryonic tissue | 1 / 215722 | 4 | |
| esophagus | 0 / 20209 | 0 | |
| eye | 10 / 211054 | 47 | |
| heart | 0 / 89626 | 0 | |
| intestine | 1 / 234472 | 4 | |
| kidney | 0 / 211777 | 0 | |
| larynx | 0 / 24145 | 0 | |
| liver | 1 / 207743 | 4 | |
| lung | 1 / 336974 | 2 | |
| lymph | 0 / 44270 | 0 | |
| lymph node | 0 / 91610 | 0 | |
| mammary gland | 0 / 153271 | 0 | |
| mouth | 2 / 67052 | 29 | |
| muscle | 2 / 107715 | 18 | |
| nerve | 0 / 15768 | 0 | |
| ovary | 0 / 102051 | 0 | |
| pancreas | 0 / 214812 | 0 | |
| parathyroid | 0 / 20539 | 0 | |
| pharynx | 0 / 41328 | 0 | |
| pituitary gland | 0 / 16585 | 0 | |
| placenta | 47 / 280825 | 167 | |
| prostate | 0 / 189345 | 0 | |
| salivary gland | 0 / 20155 | 0 | |
| skin | 9 / 210574 | 42 | |
| spleen | 0 / 53952 | 0 | |
| stomach | 0 / 96619 | 0 | |
| testis | 15 / 330442 | 45 | |
| thymus | 0 / 81131 | 0 | |
| thyroid | 0 / 47473 | 0 | |
| tonsil | 0 / 16999 | 0 | |
| trachea | 0 / 52413 | 0 | |
| umbilical cord | 0 / 13680 | 0 | |
| uterus | 0 / 232878 | 0 | |
| vascular | 0 / 51780 | 0 |
Microarray in - Probe name: A_32_P305888
- Donor H0351.2001
- Sex: Male Age: 24 years Race/Ethnicity: African American Handedness: Left
- Tissue Receipt Date: 7/29/2009 Serology: Pass Tissue pH :6.72 Additional Medical Information :History of asthma
- Postmortem Interval: 23 hours (estimated time of death to time that tissue is frozen)
- Toxicology: Positive for atropine and caffeine, at levels usually not toxicologically significant
| Tissue | Expression(mean ± stddev) | Expression Bar |
|---|---|---|
| Amygdala | 3.53 ± 1.17 | ![](../"images/bar_3.png"){kind=small}   |
| Basal Forebrain | 4.31 ± 0.77 | |
| Basal Part of Pons | 4.41 ± 0.98 | |
| Cerebellar Cortex | 3.3 ± 0.68 | |
| Cerebellar Nuclei | 5.22 ± 0.78 | |
| Claustrum | 3.89 ± 0.69 | |
| Epithalamus | 3.47 ± 1.45 | |
| Frontal Lobe | 4 ± 1.24 | |
| Globus Pallidus | 6.23 ± 0.26 | |
| Hypothalamus | 3.41 ± 0.98 | |
| Insula | 3.09 ± 1.04 | |
| Limbic Lobe | 3.45 ± 0.97 | |
| Mesencephalon | 4.24 ± 1.25 | |
| Myelencephalon | 4.03 ± 1.08 | |
| Occipital Lobe | 3.76 ± 1.12 | |
| Parietal Lobe | 4 ± 1.11 | |
| Pontine Tegmentum | 4.07 ± 0.93 | |
| Striatum | 4.87 ± 0.79 | |
| Subthalamus | 4.59 ± 1 | |
| Temporal Lobe | 3.66 ± 1.05 | |
| Thalamus | 4.57 ± 0.77 | |
| White Matter | 7.06 ± 1.4 | |
Mouse Brain ISH 
| Gene Symbol | Brain Structure ID | Brain Structure Name | Express Desity/Level (Meatured by ISH) | Express Bar |
|---|---|---|---|---|
| Sh3tc2 | CB | Cerebellum | 2.07 | |
| 2.61 | | |||
| Sh3tc2 | CTX | Cerebral cortex | 0.82 | |
| 0.86 | | |||
| Sh3tc2 | HIP | Hippocampal region | 0.96 | |
| 0.9 | | |||
| Sh3tc2 | HPF | Hippocampal formation | 1.18 | |
| 1.09 | | |||
| Sh3tc2 | HY | Hypothalamus | 0.39 | |
| 0.46 | | |||
| Sh3tc2 | LSX | Lateral septal complex | 1.19 | |
| 1.91 | | |||
| Sh3tc2 | MB | Midbrain | 0.54 | |
| 0.78 | | |||
| Sh3tc2 | MY | Medulla | 0.69 | |
| 0.82 | | |||
| Sh3tc2 | OLF | Olfactory bulb | 1.27 | |
| 1.7 | | |||
| Sh3tc2 | P | Pons | 0.47 | |
| 0.65 | | |||
| Sh3tc2 | PAL | Pallidum | 0.42 | |
| 0.85 | | |||
| Sh3tc2 | RHP | Retrohippocampal region | 1.74 | |
| 1.5 | | |||
| Sh3tc2 | sAMY | Striatum-like amygdalar nuclei | 0.42 | |
| 0.77 | | |||
| Sh3tc2 | STR | Striatum | 0.4 | |
| 0.43 | | |||
| Sh3tc2 | STRd | Striatum dorsal region | 0.38 | |
| 0.33 | | |||
| Sh3tc2 | STRv | Striatum ventral region | 0.26 | |
| 0.2 | | |||
| Sh3tc2 | TH | Thalamus | 0.83 | |
| 0.91 | |