AutismKB 2.0

Annotation Detail for ROGDI


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Basic Information Top
Gene Symbol:ROGDI ( FLJ22386 )
Gene Full Name: rogdi homolog (Drosophila)
Band: 16p13.3
Quick LinksEntrez ID:79641; OMIM: NA; Uniprot ID:ROGDI_HUMAN; ENSEMBL ID: ENSG00000067836; HGNC ID: 29478
Relate to Another Database: SFARIGene; denovo-db
Unigene EST Top
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
embryoid body3 / 7076142
blastocyst0 / 623190 
fetus32 / 56401256
neonate0 / 310970 
infant0 / 236200 
juvenile0 / 555560 
adult111 / 193912157
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
adrenal tumor0 / 127940 
bladder carcinoma0 / 174750 
breast (mammary gland) tumor1 / 9417810
cervical tumor0 / 343660 
chondrosarcoma5 / 8282360
colorectal tumor2 / 11424617
esophageal tumor0 / 172900 
gastrointestinal tumor1 / 1193698
germ cell tumor7 / 26384526
glioma5 / 10688346
head and neck tumor4 / 13630229
kidney tumor1 / 6895914
leukemia1 / 9584210
liver tumor5 / 9635951
lung tumor4 / 10312738
lymphoma0 / 717550 
non-neoplasia5 / 9725051
normal207 / 336030761
ovarian tumor1 / 7668213
pancreatic tumor1 / 1046169
primitive neuroectodermal tumor of the CNS6 / 12568047
prostate cancer6 / 10268058
retinoblastoma2 / 4635643
skin tumor4 / 12494932
soft tissue/muscle tissue tumor7 / 12519155
uterine tumor1 / 9025711
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
adipose tissue0 / 131060 
adrenal gland0 / 331970 
ascites0 / 400150 
bladder0 / 297570 
blood7 / 12347856
bone0 / 716550 
bone marrow0 / 488010 
brain143 / 1100989129
cervix3 / 4817162
connective tissue5 / 14925533
ear0 / 162120 
embryonic tissue3 / 21572213
esophagus0 / 202090 
eye15 / 21105471
heart3 / 8962633
intestine8 / 23447234
kidney12 / 21177756
larynx1 / 2414541
liver5 / 20774324
lung14 / 33697441
lymph0 / 442700 
lymph node3 / 9161032
mammary gland1 / 1532716
mouth2 / 6705229
muscle6 / 10771555
nerve1 / 1576863
ovary2 / 10205119
pancreas8 / 21481237
parathyroid0 / 205390 
pharynx0 / 413280 
pituitary gland1 / 1658560
placenta15 / 28082553
prostate10 / 18934552
salivary gland0 / 201550 
skin5 / 21057423
spleen1 / 5395218
stomach1 / 9661910
testis6 / 33044218
thymus3 / 8113136
thyroid1 / 4747321
tonsil1 / 1699958
trachea0 / 524130 
umbilical cord0 / 136800 
uterus5 / 23287821
vascular0 / 517800 
Microarray in BioGPS Top
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  • Microarray Platform: GeneAtlas U133A, gcrma
  • Affymatrix Probe ID: 218394_at
Cell line Expression level Expression bar
721_B_lymphoblasts17.05
Adipocyte17.35
AdrenalCortex30.75
Adrenalgland37.9
Amygdala134.25
Appendix25.5
AtrioventricularNode17
BDCA4+_DentriticCells40.1
Bonemarrow40.8
BronchialEpithelialCells25.5
CD105+_Endothelial30.3
CD14+_Monocytes123.25
CD19+_BCells(neg._sel.)25.7
CD33+_Myeloid338.05
CD34+31.65
CD4+_Tcells21.5
CD56+_NKCells19.75
CD71+_EarlyErythroid186.3
CD8+_Tcells13.5
CardiacMyocytes31.55
Caudatenucleus139.1
Cerebellum80.6
CerebellumPeduncles142.8
CiliaryGanglion17.6
CingulateCortex118.8
Colorectaladenocarcinoma25.15
DorsalRootGanglion13.6
FetalThyroid26.1
Fetalbrain52.55
Fetalliver23
Fetallung19.3
GlobusPallidus41.35
Heart164.4
Hypothalamus139.15
Kidney29.6
Leukemia_chronicMyelogenousK-56218.9
Leukemia_promyelocytic-HL-6014.6
Leukemialymphoblastic(MOLT-4)13.95
Liver35.35
Lung30.15
Lymphnode19.75
Lymphoma_burkitts(Daudi)32.1
Lymphoma_burkitts(Raji)29.3
MedullaOblongata160.5
OccipitalLobe118.85
OlfactoryBulb21.3
Ovary10.95
Pancreas12.6
PancreaticIslet20.85
ParietalLobe128.7
Pituitary58.2
Placenta21
Pons65.2
PrefrontalCortex226.9
Prostate42.15
Salivarygland17.65
SkeletalMuscle29.6
Skin12.65
SmoothMuscle17.45
Spinalcord180.7
SubthalamicNucleus85.65
SuperiorCervicalGanglion28.6
TemporalLobe74.75
Testis21.95
TestisGermCell18.75
TestisIntersitial14.5
TestisLeydigCell25.15
TestisSeminiferousTubule23.25
Thalamus130.45
Thymus20.45
Thyroid31
Tongue25.9
Tonsil23.5
Trachea21.05
TrigeminalGanglion27.05
Uterus18.45
UterusCorpus18.85
WholeBlood27.75
Wholebrain337.55
colon23.1
pineal_day769.6
pineal_night595.48
retina133.25
small_intestine18.4
Allen Brain Atlas Top
Human Whole Brain Microarrayview in Allen Brain Atlas
  • Probe id     Donor id      
  • Probe name: CUST_7055_PI416261804
  • Donor H0351.2001
  • Sex: Male     Age: 24 years     Race/Ethnicity: African American     Handedness: Left
  • Tissue Receipt Date: 7/29/2009     Serology: Pass      Tissue pH :6.72     Additional Medical Information :History of asthma
  • Postmortem Interval: 23 hours (estimated time of death to time that tissue is frozen)
  • Toxicology: Positive for atropine and caffeine, at levels usually not toxicologically significant
Tissue Expression(mean ± stddev) Expression Bar
Amygdala6.58 ± 0.37
Basal Forebrain6.34 ± 0.19
Basal Part of Pons6.49 ± 0.4
Cerebellar Cortex6.54 ± 0.44
Cerebellar Nuclei6.53 ± 0.31
Claustrum6.71 ± 0.59
Epithalamus5.68 ± 0.48
Frontal Lobe6.56 ± 0.4
Globus Pallidus6.76 ± 0.28
Hypothalamus5.84 ± 0.49
Insula6.36 ± 0.28
Limbic Lobe6.71 ± 0.5
Mesencephalon6.43 ± 0.39
Myelencephalon6.5 ± 0.46
Occipital Lobe6.18 ± 0.44
Parietal Lobe6.48 ± 0.43
Pontine Tegmentum6.4 ± 0.44
Striatum6.38 ± 0.43
Subthalamus6.18 ± 0.45
Temporal Lobe6.5 ± 0.41
Thalamus6.49 ± 0.39
White Matter7.6 ± 0.38
Mouse Brain ISH
Gene Symbol Brain Structure ID Brain Structure Name Express Desity/Level (Meatured by ISH) Express Bar
RogdiCBCerebellum79.1
98.79
RogdiCTXCerebral cortex100
100
RogdiHIPHippocampal region100
100
RogdiHPFHippocampal formation100
100
RogdiHYHypothalamus100
100
RogdiLSXLateral septal complex100
100
RogdiMBMidbrain100
100
RogdiMYMedulla100
100
RogdiOLFOlfactory bulb100
100
RogdiPPons100
100
RogdiPALPallidum100
100
RogdiRHPRetrohippocampal region100
100
RogdisAMYStriatum-like amygdalar nuclei100
100
RogdiSTRStriatum100
100
RogdiSTRdStriatum dorsal region100
100
RogdiSTRvStriatum ventral region100
100
RogdiTHThalamus100
100
Peptide Top

Simple Query:


  (e.g. CHD8)

Syndromic Genes

Non-syndromic Genes

AutismKB Statistics

  • Studies: 1,036
  • Genes: 1,379
  • CNVs/SVs: 5,420
  • SNVs/Indels: 11,669
  • de novo Mutations: 5,669
  • Mosaics: 789
  • Linkage Regions: 172
  • Paper Collected: 6/30/2018
  • Last Update: 8/26/2018


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