Annotation Detail for MCPH1
Basic Information Top
| Gene Symbol: | MCPH1 ( BRIT1,FLJ12847,MCT ) |
|---|---|
| Gene Full Name: | microcephalin 1 |
| Band: | 8p23.1 |
| Quick Links | Entrez ID:79648; OMIM: 607117; Uniprot ID:MCPH1_HUMAN; ENSEMBL ID: ENSG00000147316; HGNC ID: 6954 |
| Relate to Another Database: | SFARIGene; denovo-db |
- Unigene ID: Hs.721952
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
 | |||
| embryoid body | 2 / 70761 | 28 |  |
| blastocyst | 1 / 62319 | 16 | |
| fetus | 17 / 564012 | 30 | |
| neonate | 0 / 31097 | 0 | |
| infant | 0 / 23620 | 0 | |
| juvenile | 0 / 55556 | 0 | |
| adult | 28 / 1939121 | 14 | |
| embryoid body | 0 / 70761 | 0 | |
| blastocyst | 0 / 62319 | 0 | |
| fetus | 1 / 564012 | 1 |  |
| neonate | 0 / 31097 | 0 | |
| infant | 0 / 23620 | 0 | |
| juvenile | 0 / 55556 | 0 | |
| adult | 3 / 1939121 | 1 | |
| embryoid body | 0 / 70761 | 0 | |
| blastocyst | 0 / 62319 | 0 | |
| fetus | 0 / 564012 | 0 | |
| neonate | 0 / 31097 | 0 | |
| infant | 0 / 23620 | 0 | |
| juvenile | 0 / 55556 | 0 | |
| adult | 1 / 1939121 | 0 |
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
| |||
| adrenal tumor | 0 / 12794 | 0 | |
| bladder carcinoma | 0 / 17475 | 0 | |
| breast (mammary gland) tumor | 1 / 94178 | 10 |  |
| cervical tumor | 0 / 34366 | 0 | |
| chondrosarcoma | 2 / 82823 | 24 | |
| colorectal tumor | 1 / 114246 | 8 | |
| esophageal tumor | 0 / 17290 | 0 | |
| gastrointestinal tumor | 3 / 119369 | 25 | |
| germ cell tumor | 8 / 263845 | 30 | |
| glioma | 2 / 106883 | 18 | |
| head and neck tumor | 5 / 136302 | 36 | |
| kidney tumor | 1 / 68959 | 14 | |
| leukemia | 2 / 95842 | 20 | |
| liver tumor | 3 / 96359 | 31 | |
| lung tumor | 0 / 103127 | 0 | |
| lymphoma | 2 / 71755 | 27 | |
| non-neoplasia | 0 / 97250 | 0 | |
| normal | 76 / 3360307 | 22 | |
| ovarian tumor | 0 / 76682 | 0 | |
| pancreatic tumor | 0 / 104616 | 0 | |
| primitive neuroectodermal tumor of the CNS | 8 / 125680 | 63 |  |
| prostate cancer | 1 / 102680 | 9 | |
| retinoblastoma | 2 / 46356 | 43 | |
| skin tumor | 1 / 124949 | 8 | |
| soft tissue/muscle tissue tumor | 2 / 125191 | 15 | |
| uterine tumor | 4 / 90257 | 44 | |
| adrenal tumor | 0 / 12794 | 0 | |
| bladder carcinoma | 0 / 17475 | 0 | |
| breast (mammary gland) tumor | 0 / 94178 | 0 | |
| cervical tumor | 0 / 34366 | 0 | |
| chondrosarcoma | 0 / 82823 | 0 | |
| colorectal tumor | 1 / 114246 | 8 | |
| esophageal tumor | 0 / 17290 | 0 | |
| gastrointestinal tumor | 0 / 119369 | 0 | |
| germ cell tumor | 0 / 263845 | 0 | |
| glioma | 2 / 106883 | 18 | |
| head and neck tumor | 0 / 136302 | 0 | |
| kidney tumor | 0 / 68959 | 0 | |
| leukemia | 0 / 95842 | 0 | |
| liver tumor | 0 / 96359 | 0 | |
| lung tumor | 0 / 103127 | 0 | |
| lymphoma | 0 / 71755 | 0 | |
| non-neoplasia | 1 / 97250 | 10 | |
| normal | 6 / 3360307 | 1 | |
| ovarian tumor | 0 / 76682 | 0 | |
| pancreatic tumor | 0 / 104616 | 0 | |
| primitive neuroectodermal tumor of the CNS | 0 / 125680 | 0 | |
| prostate cancer | 0 / 102680 | 0 | |
| retinoblastoma | 0 / 46356 | 0 | |
| skin tumor | 0 / 124949 | 0 | |
| soft tissue/muscle tissue tumor | 0 / 125191 | 0 | |
| uterine tumor | 0 / 90257 | 0 | |
| adrenal tumor | 0 / 12794 | 0 | |
| bladder carcinoma | 0 / 17475 | 0 | |
| breast (mammary gland) tumor | 0 / 94178 | 0 | |
| cervical tumor | 0 / 34366 | 0 | |
| chondrosarcoma | 0 / 82823 | 0 | |
| colorectal tumor | 0 / 114246 | 0 | |
| esophageal tumor | 0 / 17290 | 0 | |
| gastrointestinal tumor | 0 / 119369 | 0 | |
| germ cell tumor | 1 / 263845 | 3 | |
| glioma | 0 / 106883 | 0 | |
| head and neck tumor | 0 / 136302 | 0 | |
| kidney tumor | 0 / 68959 | 0 | |
| leukemia | 0 / 95842 | 0 | |
| liver tumor | 0 / 96359 | 0 | |
| lung tumor | 0 / 103127 | 0 | |
| lymphoma | 0 / 71755 | 0 | |
| non-neoplasia | 0 / 97250 | 0 | |
| normal | 0 / 3360307 | 0 | |
| ovarian tumor | 0 / 76682 | 0 | |
| pancreatic tumor | 0 / 104616 | 0 | |
| primitive neuroectodermal tumor of the CNS | 0 / 125680 | 0 | |
| prostate cancer | 0 / 102680 | 0 | |
| retinoblastoma | 0 / 46356 | 0 | |
| skin tumor | 0 / 124949 | 0 | |
| soft tissue/muscle tissue tumor | 0 / 125191 | 0 | |
| uterine tumor | 0 / 90257 | 0 |
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
| |||
| adipose tissue | 0 / 13106 | 0 | |
| adrenal gland | 0 / 33197 | 0 | |
| ascites | 3 / 40015 | 74 | |
| bladder | 1 / 29757 | 33 | |
| blood | 1 / 123478 | 8 | |
| bone | 2 / 71655 | 27 | |
| bone marrow | 0 / 48801 | 0 | |
| brain | 25 / 1100989 | 22 | |
| cervix | 0 / 48171 | 0 | |
| connective tissue | 2 / 149255 | 13 | |
| ear | 0 / 16212 | 0 | |
| embryonic tissue | 4 / 215722 | 18 | |
| esophagus | 0 / 20209 | 0 | |
| eye | 2 / 211054 | 9 | |
| heart | 0 / 89626 | 0 | |
| intestine | 3 / 234472 | 12 | |
| kidney | 6 / 211777 | 28 | |
| larynx | 0 / 24145 | 0 | |
| liver | 4 / 207743 | 19 | |
| lung | 9 / 336974 | 26 | |
| lymph | 0 / 44270 | 0 | |
| lymph node | 6 / 91610 | 65 | |
| mammary gland | 1 / 153271 | 6 | |
| mouth | 3 / 67052 | 44 | |
| muscle | 1 / 107715 | 9 | |
| nerve | 0 / 15768 | 0 | |
| ovary | 0 / 102051 | 0 | |
| pancreas | 2 / 214812 | 9 | |
| parathyroid | 1 / 20539 | 48 | |
| pharynx | 2 / 41328 | 48 | |
| pituitary gland | 1 / 16585 | 60 | |
| placenta | 6 / 280825 | 21 | |
| prostate | 2 / 189345 | 10 | |
| salivary gland | 0 / 20155 | 0 | |
| skin | 1 / 210574 | 4 | |
| spleen | 2 / 53952 | 37 | |
| stomach | 0 / 96619 | 0 | |
| testis | 18 / 330442 | 54 | |
| thymus | 7 / 81131 | 86 | |
| thyroid | 0 / 47473 | 0 | |
| tonsil | 0 / 16999 | 0 | |
| trachea | 5 / 52413 | 95 | |
| umbilical cord | 0 / 13680 | 0 | |
| uterus | 6 / 232878 | 25 | |
| vascular | 2 / 51780 | 38 | |
| adipose tissue | 0 / 13106 | 0 | |
| adrenal gland | 0 / 33197 | 0 | |
| ascites | 0 / 40015 | 0 | |
| bladder | 0 / 29757 | 0 | |
| blood | 0 / 123478 | 0 | |
| bone | 0 / 71655 | 0 | |
| bone marrow | 0 / 48801 | 0 | |
| brain | 3 / 1100989 | 2 | |
| cervix | 0 / 48171 | 0 | |
| connective tissue | 0 / 149255 | 0 | |
| ear | 0 / 16212 | 0 | |
| embryonic tissue | 0 / 215722 | 0 | |
| esophagus | 0 / 20209 | 0 | |
| eye | 2 / 211054 | 9 | |
| heart | 1 / 89626 | 11 | |
| intestine | 2 / 234472 | 8 | |
| kidney | 0 / 211777 | 0 | |
| larynx | 0 / 24145 | 0 | |
| liver | 0 / 207743 | 0 | |
| lung | 0 / 336974 | 0 | |
| lymph | 0 / 44270 | 0 | |
| lymph node | 0 / 91610 | 0 | |
| mammary gland | 0 / 153271 | 0 | |
| mouth | 0 / 67052 | 0 | |
| muscle | 0 / 107715 | 0 | |
| nerve | 0 / 15768 | 0 | |
| ovary | 0 / 102051 | 0 | |
| pancreas | 0 / 214812 | 0 | |
| parathyroid | 2 / 20539 | 97 | |
| pharynx | 0 / 41328 | 0 | |
| pituitary gland | 0 / 16585 | 0 | |
| placenta | 0 / 280825 | 0 | |
| prostate | 0 / 189345 | 0 | |
| salivary gland | 0 / 20155 | 0 | |
| skin | 0 / 210574 | 0 | |
| spleen | 0 / 53952 | 0 | |
| stomach | 0 / 96619 | 0 | |
| testis | 0 / 330442 | 0 | |
| thymus | 0 / 81131 | 0 | |
| thyroid | 2 / 47473 | 42 | |
| tonsil | 0 / 16999 | 0 | |
| trachea | 0 / 52413 | 0 | |
| umbilical cord | 0 / 13680 | 0 | |
| uterus | 0 / 232878 | 0 | |
| vascular | 0 / 51780 | 0 | |
| adipose tissue | 0 / 13106 | 0 | |
| adrenal gland | 0 / 33197 | 0 | |
| ascites | 0 / 40015 | 0 | |
| bladder | 0 / 29757 | 0 | |
| blood | 0 / 123478 | 0 | |
| bone | 0 / 71655 | 0 | |
| bone marrow | 0 / 48801 | 0 | |
| brain | 0 / 1100989 | 0 | |
| cervix | 0 / 48171 | 0 | |
| connective tissue | 0 / 149255 | 0 | |
| ear | 0 / 16212 | 0 | |
| embryonic tissue | 0 / 215722 | 0 | |
| esophagus | 0 / 20209 | 0 | |
| eye | 0 / 211054 | 0 | |
| heart | 0 / 89626 | 0 | |
| intestine | 0 / 234472 | 0 | |
| kidney | 0 / 211777 | 0 | |
| larynx | 0 / 24145 | 0 | |
| liver | 0 / 207743 | 0 | |
| lung | 0 / 336974 | 0 | |
| lymph | 0 / 44270 | 0 | |
| lymph node | 0 / 91610 | 0 | |
| mammary gland | 0 / 153271 | 0 | |
| mouth | 0 / 67052 | 0 | |
| muscle | 0 / 107715 | 0 | |
| nerve | 0 / 15768 | 0 | |
| ovary | 0 / 102051 | 0 | |
| pancreas | 0 / 214812 | 0 | |
| parathyroid | 0 / 20539 | 0 | |
| pharynx | 0 / 41328 | 0 | |
| pituitary gland | 0 / 16585 | 0 | |
| placenta | 0 / 280825 | 0 | |
| prostate | 0 / 189345 | 0 | |
| salivary gland | 0 / 20155 | 0 | |
| skin | 0 / 210574 | 0 | |
| spleen | 0 / 53952 | 0 | |
| stomach | 0 / 96619 | 0 | |
| testis | 1 / 330442 | 3 | |
| thymus | 0 / 81131 | 0 | |
| thyroid | 0 / 47473 | 0 | |
| tonsil | 0 / 16999 | 0 | |
| trachea | 0 / 52413 | 0 | |
| umbilical cord | 0 / 13680 | 0 | |
| uterus | 0 / 232878 | 0 | |
| vascular | 0 / 51780 | 0 |
- Microarray Platform: GeneAtlas U133A, gcrma
- Affymatrix Probe ID: 219592_at
| Cell line | Expression level | Expression bar |
|---|---|---|
| ||
| 721_B_lymphoblasts | 6.25 | |
| Adipocyte | 4.45 | |
| AdrenalCortex | 4.8 | |
| Adrenalgland | 3.9 | |
| Amygdala | 4.65 | |
| Appendix | 4.55 | |
| AtrioventricularNode | 3.45 | |
| BDCA4+_DentriticCells | 4.85 | |
| Bonemarrow | 4.5 | |
| BronchialEpithelialCells | 4.4 | |
| CD105+_Endothelial | 4.55 | |
| CD14+_Monocytes | 4.8 | |
| CD19+_BCells(neg._sel.) | 4.9 | |
| CD33+_Myeloid | 5.65 | |
| CD34+ | 5.6 | |
| CD4+_Tcells | 4.9 | |
| CD56+_NKCells | 5.4 | |
| CD71+_EarlyErythroid | 4.2 | |
| CD8+_Tcells | 4.35 | |
| CardiacMyocytes | 6.05 | |
| Caudatenucleus | 4.05 | |
| Cerebellum | 3.65 | |
| CerebellumPeduncles | 5.2 | |
| CiliaryGanglion | 3.2 | |
| CingulateCortex | 4.65 | |
| Colorectaladenocarcinoma | 4.55 | |
| DorsalRootGanglion | 3.5 | |
| FetalThyroid | 4.4 | |
| Fetalbrain | 4.5 | |
| Fetalliver | 4 | |
| Fetallung | 3.7 | |
| GlobusPallidus | 3.35 | |
| Heart | 5.95 | |
| Hypothalamus | 4.85 | |
| Kidney | 3.7 | |
| Leukemia_chronicMyelogenousK-562 | 4.1 | |
| Leukemia_promyelocytic-HL-60 | 3.95 | |
| Leukemialymphoblastic(MOLT-4) | 3.65 | |
| Liver | 6.35 | |
| Lung | 4.9 | |
| Lymphnode | 3.9 | |
| Lymphoma_burkitts(Daudi) | 5.75 | |
| Lymphoma_burkitts(Raji) | 6.45 | |
| MedullaOblongata | 4.1 | |
| OccipitalLobe | 4.05 | |
| OlfactoryBulb | 3.55 | |
| Ovary | 3 | |
| Pancreas | 3.7 | |
| PancreaticIslet | 4.85 | |
| ParietalLobe | 4.85 | |
| Pituitary | 5.3 | |
| Placenta | 4.7 | |
| Pons | 4.3 | |
| PrefrontalCortex | 5.55 | |
| Prostate | 5.25 | |
| Salivarygland | 3.65 | |
| SkeletalMuscle | 5.55 | |
| Skin | 3.5 | |
| SmoothMuscle | 5.1 | |
| Spinalcord | 4.8 | |
| SubthalamicNucleus | 4.15 | |
| SuperiorCervicalGanglion | 5.2 | |
| TemporalLobe | 4.1 | |
| Testis | 3.9 | |
| TestisGermCell | 3.75 | |
| TestisIntersitial | 3.8 | |
| TestisLeydigCell | 4.5 | |
| TestisSeminiferousTubule | 3.85 | |
| Thalamus | 4.6 | |
| Thymus | 6.4 | |
| Thyroid | 5.6 | |
| Tongue | 4.55 | |
| Tonsil | 4.35 | |
| Trachea | 3.75 | |
| TrigeminalGanglion | 4.55 | |
| Uterus | 3.7 | |
| UterusCorpus | 4.1 | |
| WholeBlood | 4.9 | |
| Wholebrain | 3.85 | |
| colon | 4.5 | |
| pineal_day | 5.54 | |
| pineal_night | 5.46 | |
| retina | 5.4 | |
| small_intestine | 4.35 | |
- Probe name: CUST_452_PI416408490
- Donor H0351.2001
- Sex: Male Age: 24 years Race/Ethnicity: African American Handedness: Left
- Tissue Receipt Date: 7/29/2009 Serology: Pass Tissue pH :6.72 Additional Medical Information :History of asthma
- Postmortem Interval: 23 hours (estimated time of death to time that tissue is frozen)
- Toxicology: Positive for atropine and caffeine, at levels usually not toxicologically significant
| Tissue | Expression(mean ± stddev) | Expression Bar |
|---|---|---|
| Amygdala | 4.73 ± 0.49 | ![](../"images/bar_3.png"){kind=small}   |
| Basal Forebrain | 4.19 ± 0.19 | |
| Basal Part of Pons | 4.39 ± 0.41 | |
| Cerebellar Cortex | 4.63 ± 0.32 | |
| Cerebellar Nuclei | 4.33 ± 0.39 | |
| Claustrum | 4.45 ± 0.58 | |
| Epithalamus | 4.31 ± 0.29 | |
| Frontal Lobe | 4.19 ± 0.44 | |
| Globus Pallidus | 4.5 ± 0.6 | |
| Hypothalamus | 4.22 ± 0.24 | |
| Insula | 4.37 ± 0.27 | |
| Limbic Lobe | 4.43 ± 0.39 | |
| Mesencephalon | 4.35 ± 0.48 | |
| Myelencephalon | 4.37 ± 0.47 | |
| Occipital Lobe | 4.64 ± 0.39 | |
| Parietal Lobe | 4.37 ± 0.39 | |
| Pontine Tegmentum | 4.29 ± 0.5 | |
| Striatum | 4.44 ± 0.46 | |
| Subthalamus | 4.43 ± 0.08 | |
| Temporal Lobe | 4.38 ± 0.44 | |
| Thalamus | 4.28 ± 0.53 | |
| White Matter | 5.14 ± 0.45 | |
Mouse Brain ISH 
| Gene Symbol | Brain Structure ID | Brain Structure Name | Express Desity/Level (Meatured by ISH) | Express Bar |
|---|---|---|---|---|
| Mcph1 | CB | Cerebellum | 59.65 | |
| 77.37 | | |||
| Mcph1 | CTX | Cerebral cortex | 100 | |
| 81.46 | | |||
| Mcph1 | HIP | Hippocampal region | 67.22 | |
| 99.62 | | |||
| Mcph1 | HPF | Hippocampal formation | 70.1 | |
| 82.72 | | |||
| Mcph1 | HY | Hypothalamus | 75.42 | |
| 56.86 | | |||
| Mcph1 | LSX | Lateral septal complex | 59.96 | |
| 40.55 | | |||
| Mcph1 | MB | Midbrain | 64.9 | |
| 55.09 | | |||
| Mcph1 | MY | Medulla | 70.63 | |
| 69.64 | | |||
| Mcph1 | OLF | Olfactory bulb | 100 | |
| 96.98 | | |||
| Mcph1 | P | Pons | 62.53 | |
| 62.22 | | |||
| Mcph1 | PAL | Pallidum | 69.41 | |
| 58.15 | | |||
| Mcph1 | RHP | Retrohippocampal region | 78.81 | |
| 58.74 | | |||
| Mcph1 | sAMY | Striatum-like amygdalar nuclei | 78.96 | |
| 56.94 | | |||
| Mcph1 | STR | Striatum | 71.73 | |
| 49.67 | | |||
| Mcph1 | STRd | Striatum dorsal region | 62.66 | |
| 42.73 | | |||
| Mcph1 | STRv | Striatum ventral region | 100 | |
| 70.49 | | |||
| Mcph1 | TH | Thalamus | 65.26 | |
| 50.5 | |
Peptide