AutismKB 2.0

Annotation Detail for TMEM204


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Basic Information Top
Gene Symbol:TMEM204 ( C16orf30,CLP24,FLJ20898,MGC111564 )
Gene Full Name: transmembrane protein 204
Band: 16p13.3
Quick LinksEntrez ID:79652; OMIM: 611002; Uniprot ID:TM204_HUMAN; ENSEMBL ID: ENSG00000131634; HGNC ID: 14158
Relate to Another Database: SFARIGene; denovo-db
Unigene EST Top
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
embryoid body0 / 707610 
blastocyst0 / 623190 
fetus20 / 56401235
neonate2 / 3109764
infant0 / 236200 
juvenile0 / 555560 
adult45 / 193912123
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
adrenal tumor0 / 127940 
bladder carcinoma0 / 174750 
breast (mammary gland) tumor6 / 9417863
cervical tumor1 / 3436629
chondrosarcoma1 / 8282312
colorectal tumor1 / 1142468
esophageal tumor0 / 172900 
gastrointestinal tumor1 / 1193698
germ cell tumor1 / 2638453
glioma5 / 10688346
head and neck tumor0 / 1363020 
kidney tumor2 / 6895929
leukemia1 / 9584210
liver tumor1 / 9635910
lung tumor1 / 1031279
lymphoma0 / 717550 
non-neoplasia11 / 97250113
normal190 / 336030756
ovarian tumor2 / 7668226
pancreatic tumor2 / 10461619
primitive neuroectodermal tumor of the CNS0 / 1256800 
prostate cancer0 / 1026800 
retinoblastoma0 / 463560 
skin tumor0 / 1249490 
soft tissue/muscle tissue tumor4 / 12519131
uterine tumor2 / 9025722
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
adipose tissue1 / 1310676
adrenal gland9 / 33197271
ascites0 / 400150 
bladder4 / 29757134
blood3 / 12347824
bone0 / 716550 
bone marrow0 / 488010 
brain31 / 110098928
cervix7 / 48171145
connective tissue14 / 14925593
ear0 / 162120 
embryonic tissue2 / 2157229
esophagus1 / 2020949
eye2 / 2110549
heart16 / 89626178
intestine21 / 23447289
kidney21 / 21177799
larynx0 / 241450 
liver2 / 2077439
lung16 / 33697447
lymph0 / 442700 
lymph node0 / 916100 
mammary gland11 / 15327171
mouth0 / 670520 
muscle0 / 1077150 
nerve0 / 157680 
ovary3 / 10205129
pancreas17 / 21481279
parathyroid1 / 2053948
pharynx2 / 4132848
pituitary gland0 / 165850 
placenta12 / 28082542
prostate6 / 18934531
salivary gland0 / 201550 
skin3 / 21057414
spleen10 / 53952185
stomach5 / 9661951
testis5 / 33044215
thymus12 / 81131147
thyroid0 / 474730 
tonsil0 / 169990 
trachea0 / 524130 
umbilical cord2 / 13680146
uterus15 / 23287864
vascular3 / 5178057
Microarray in BioGPS Top
Select probe  
  • Microarray Platform: GeneAtlas U133A, gcrma
  • Affymatrix Probe ID: 219315_s_at
Cell line Expression level Expression bar
721_B_lymphoblasts8.6
Adipocyte20.95
AdrenalCortex12.25
Adrenalgland45.2
Amygdala11.6
Appendix16.65
AtrioventricularNode8.1
BDCA4+_DentriticCells19.65
Bonemarrow12.15
BronchialEpithelialCells7.25
CD105+_Endothelial12.25
CD14+_Monocytes9.65
CD19+_BCells(neg._sel.)12.4
CD33+_Myeloid12.85
CD34+21.05
CD4+_Tcells540.7
CD56+_NKCells178.1
CD71+_EarlyErythroid10.1
CD8+_Tcells392.35
CardiacMyocytes20.8
Caudatenucleus9.7
Cerebellum10.75
CerebellumPeduncles12.1
CiliaryGanglion7.4
CingulateCortex10.95
Colorectaladenocarcinoma9.75
DorsalRootGanglion8.05
FetalThyroid130.95
Fetalbrain10.65
Fetalliver9.3
Fetallung133.6
GlobusPallidus7.7
Heart534.05
Hypothalamus11.9
Kidney13.3
Leukemia_chronicMyelogenousK-5628.4
Leukemia_promyelocytic-HL-608.15
Leukemialymphoblastic(MOLT-4)7.6
Liver102.85
Lung949.2
Lymphnode45.75
Lymphoma_burkitts(Daudi)11.8
Lymphoma_burkitts(Raji)13.35
MedullaOblongata9.9
OccipitalLobe9.6
OlfactoryBulb11.7
Ovary7.25
Pancreas8.85
PancreaticIslet22.3
ParietalLobe11.15
Pituitary12.55
Placenta115
Pons10.15
PrefrontalCortex34
Prostate134.45
Salivarygland19.9
SkeletalMuscle11.75
Skin8
SmoothMuscle20.05
Spinalcord11.45
SubthalamicNucleus9.8
SuperiorCervicalGanglion12.05
TemporalLobe8.35
Testis11.65
TestisGermCell15.6
TestisIntersitial8.3
TestisLeydigCell10.6
TestisSeminiferousTubule9.25
Thalamus11.45
Thymus90.8
Thyroid179.3
Tongue10.5
Tonsil18.6
Trachea15.65
TrigeminalGanglion11.15
Uterus132.45
UterusCorpus16.25
WholeBlood178.65
Wholebrain20.65
colon11.8
pineal_day15.62
pineal_night16.76
retina143.6
small_intestine29.85
Allen Brain Atlas Top
Human Whole Brain Microarrayview in Allen Brain Atlas
  • Probe id     Donor id      
  • Probe name: CUST_551_PI416573500
  • Donor H0351.2001
  • Sex: Male     Age: 24 years     Race/Ethnicity: African American     Handedness: Left
  • Tissue Receipt Date: 7/29/2009     Serology: Pass      Tissue pH :6.72     Additional Medical Information :History of asthma
  • Postmortem Interval: 23 hours (estimated time of death to time that tissue is frozen)
  • Toxicology: Positive for atropine and caffeine, at levels usually not toxicologically significant
Tissue Expression(mean ± stddev) Expression Bar
Amygdala3.44 ± 0.8
Basal Forebrain3.03 ± 0.61
Basal Part of Pons2.86 ± 0.66
Cerebellar Cortex2.92 ± 0.53
Cerebellar Nuclei3.49 ± 0.69
Claustrum3.77 ± 0.87
Epithalamus3.04 ± 0.95
Frontal Lobe3.21 ± 0.73
Globus Pallidus3.81 ± 1.05
Hypothalamus3.04 ± 0.55
Insula2.88 ± 0.78
Limbic Lobe3.17 ± 0.77
Mesencephalon3.44 ± 0.74
Myelencephalon3.34 ± 0.8
Occipital Lobe3.53 ± 1.03
Parietal Lobe3.16 ± 0.86
Pontine Tegmentum3.28 ± 0.86
Striatum3.57 ± 0.83
Subthalamus3.71 ± 1.42
Temporal Lobe3.13 ± 0.76
Thalamus3.54 ± 0.91
White Matter3.42 ± 0.56
Mouse Brain ISH
Gene Symbol Brain Structure ID Brain Structure Name Express Desity/Level (Meatured by ISH) Express Bar
BC054438CBCerebellum13.99
25.1
BC054438CTXCerebral cortex1.94
1.76
BC054438HIPHippocampal region0.73
1.01
BC054438HPFHippocampal formation1.44
1.65
BC054438HYHypothalamus0.36
0.33
BC054438LSXLateral septal complex0.61
0.53
BC054438MBMidbrain1.34
1.83
BC054438MYMedulla4.85
6.99
BC054438OLFOlfactory bulb2.63
2.21
BC054438PPons1.2
1.44
BC054438PALPallidum0.37
0.33
BC054438RHPRetrohippocampal region2.11
2.05
BC054438sAMYStriatum-like amygdalar nuclei0.09
0.07
BC054438STRStriatum0.53
0.44
BC054438STRdStriatum dorsal region0.42
0.34
BC054438STRvStriatum ventral region0.72
0.55
BC054438THThalamus1.26
1.27
Peptide Top

Simple Query:


  (e.g. CHD8)

Syndromic Genes

Non-syndromic Genes

AutismKB Statistics

  • Studies: 1,036
  • Genes: 1,379
  • CNVs/SVs: 5,420
  • SNVs/Indels: 11,669
  • de novo Mutations: 5,669
  • Mosaics: 789
  • Linkage Regions: 172
  • Paper Collected: 6/30/2018
  • Last Update: 8/26/2018


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