AutismKB 2.0

Annotation Detail for C11orf61


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Basic Information Top
Gene Symbol:C11orf61 ( FLJ23342 )
Gene Full Name: chromosome 11 open reading frame 61
Band: 11q24.2
Quick LinksEntrez ID:79684; OMIM: NA; Uniprot ID:CK061_HUMAN; ENSEMBL ID: ENSG00000120458; HGNC ID:
Relate to Another Database: SFARIGene; denovo-db
Unigene EST Top
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
embryoid body4 / 7076156
blastocyst1 / 6231916
fetus15 / 56401226
neonate0 / 310970 
infant0 / 236200 
juvenile1 / 5555617
adult25 / 193912112
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
adrenal tumor0 / 127940 
bladder carcinoma0 / 174750 
breast (mammary gland) tumor1 / 9417810
cervical tumor0 / 343660 
chondrosarcoma1 / 8282312
colorectal tumor2 / 11424617
esophageal tumor0 / 172900 
gastrointestinal tumor0 / 1193690 
germ cell tumor6 / 26384522
glioma0 / 1068830 
head and neck tumor2 / 13630214
kidney tumor0 / 689590 
leukemia5 / 9584252
liver tumor2 / 9635920
lung tumor1 / 1031279
lymphoma1 / 7175513
non-neoplasia0 / 972500 
normal60 / 336030717
ovarian tumor1 / 7668213
pancreatic tumor2 / 10461619
primitive neuroectodermal tumor of the CNS2 / 12568015
prostate cancer1 / 1026809
retinoblastoma0 / 463560 
skin tumor2 / 12494916
soft tissue/muscle tissue tumor2 / 12519115
uterine tumor1 / 9025711
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
adipose tissue0 / 131060 
adrenal gland0 / 331970 
ascites0 / 400150 
bladder0 / 297570 
blood0 / 1234780 
bone0 / 716550 
bone marrow0 / 488010 
brain13 / 110098911
cervix0 / 481710 
connective tissue4 / 14925526
ear0 / 162120 
embryonic tissue7 / 21572232
esophagus0 / 202090 
eye2 / 2110549
heart6 / 8962666
intestine5 / 23447221
kidney1 / 2117774
larynx1 / 2414541
liver2 / 2077439
lung1 / 3369742
lymph0 / 442700 
lymph node10 / 91610109
mammary gland1 / 1532716
mouth1 / 6705214
muscle1 / 1077159
nerve1 / 1576863
ovary0 / 1020510 
pancreas2 / 2148129
parathyroid0 / 205390 
pharynx0 / 413280 
pituitary gland0 / 165850 
placenta5 / 28082517
prostate1 / 1893455
salivary gland0 / 201550 
skin7 / 21057433
spleen1 / 5395218
stomach0 / 966190 
testis1 / 3304423
thymus4 / 8113149
thyroid1 / 4747321
tonsil0 / 169990 
trachea2 / 5241338
umbilical cord0 / 136800 
uterus5 / 23287821
vascular0 / 517800 
Microarray in BioGPS Top
Select probe  
  • Microarray Platform: GeneAtlas U133A, gcrma
  • Affymatrix Probe ID: 221208_s_at
Cell line Expression level Expression bar
721_B_lymphoblasts9.45
Adipocyte5.95
AdrenalCortex6.65
Adrenalgland5.45
Amygdala11.55
Appendix6.55
AtrioventricularNode6.3
BDCA4+_DentriticCells6.65
Bonemarrow6.05
BronchialEpithelialCells5.65
CD105+_Endothelial6.25
CD14+_Monocytes6.6
CD19+_BCells(neg._sel.)7.6
CD33+_Myeloid9.05
CD34+8.55
CD4+_Tcells8.15
CD56+_NKCells7.6
CD71+_EarlyErythroid6
CD8+_Tcells9.45
CardiacMyocytes8.1
Caudatenucleus5.4
Cerebellum5.35
CerebellumPeduncles7.35
CiliaryGanglion4.6
CingulateCortex6.6
Colorectaladenocarcinoma6.15
DorsalRootGanglion5.7
FetalThyroid7.7
Fetalbrain29.6
Fetalliver5.3
Fetallung8.55
GlobusPallidus4.75
Heart8.35
Hypothalamus7
Kidney5.4
Leukemia_chronicMyelogenousK-5625.6
Leukemia_promyelocytic-HL-605.45
Leukemialymphoblastic(MOLT-4)5
Liver8.8
Lung6.95
Lymphnode12.3
Lymphoma_burkitts(Daudi)8.1
Lymphoma_burkitts(Raji)8.75
MedullaOblongata5.85
OccipitalLobe5.65
OlfactoryBulb7.75
Ovary4.3
Pancreas5.3
PancreaticIslet6.35
ParietalLobe6.45
Pituitary8
Placenta6.65
Pons7.25
PrefrontalCortex11.5
Prostate13.6
Salivarygland5.5
SkeletalMuscle7.35
Skin5.65
SmoothMuscle6.45
Spinalcord6.95
SubthalamicNucleus5.8
SuperiorCervicalGanglion7.2
TemporalLobe5.85
Testis5
TestisGermCell5
TestisIntersitial5.1
TestisLeydigCell6.35
TestisSeminiferousTubule5.1
Thalamus6.55
Thymus6.15
Thyroid57.15
Tongue6.35
Tonsil5.7
Trachea5.4
TrigeminalGanglion6.8
Uterus19.95
UterusCorpus5.85
WholeBlood7.55
Wholebrain5.8
colon9
pineal_day8.88
pineal_night9.06
retina8.9
small_intestine6.15
Allen Brain Atlas Top
Human Whole Brain Microarrayview in Allen Brain Atlas
  • Probe id     Donor id      
  • Probe name: A_23_P52885
  • Donor H0351.2001
  • Sex: Male     Age: 24 years     Race/Ethnicity: African American     Handedness: Left
  • Tissue Receipt Date: 7/29/2009     Serology: Pass      Tissue pH :6.72     Additional Medical Information :History of asthma
  • Postmortem Interval: 23 hours (estimated time of death to time that tissue is frozen)
  • Toxicology: Positive for atropine and caffeine, at levels usually not toxicologically significant
Tissue Expression(mean ± stddev) Expression Bar
Amygdala4.05 ± 0.82
Basal Forebrain4.17 ± 0.47
Basal Part of Pons3.9 ± 0.52
Cerebellar Cortex4.34 ± 0.34
Cerebellar Nuclei4.41 ± 0.49
Claustrum4.27 ± 0.89
Epithalamus3.76 ± 0.68
Frontal Lobe3.93 ± 0.61
Globus Pallidus4.25 ± 0.39
Hypothalamus3.84 ± 0.5
Insula3.59 ± 0.76
Limbic Lobe3.88 ± 0.64
Mesencephalon4.01 ± 0.64
Myelencephalon4.04 ± 0.67
Occipital Lobe4.55 ± 0.66
Parietal Lobe4.16 ± 0.5
Pontine Tegmentum4.01 ± 0.72
Striatum3.83 ± 0.69
Subthalamus4.2 ± 0.29
Temporal Lobe3.94 ± 0.62
Thalamus4.12 ± 0.57
White Matter5.22 ± 0.62
Mouse Brain ISH
Peptide Top

Simple Query:


  (e.g. CHD8)

Syndromic Genes

Non-syndromic Genes

AutismKB Statistics

  • Studies: 1,036
  • Genes: 1,379
  • CNVs/SVs: 5,420
  • SNVs/Indels: 11,669
  • de novo Mutations: 5,669
  • Mosaics: 789
  • Linkage Regions: 172
  • Paper Collected: 6/30/2018
  • Last Update: 8/26/2018


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