AutismKB 2.0

Annotation Detail for GALNT12


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Basic Information Top
Gene Symbol:GALNT12 ( CRCS1,FLJ21212,GalNAc-T12 )
Gene Full Name: UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 12 (GalNAc-T12)
Band: 9q22.33
Quick LinksEntrez ID:79695; OMIM: 610290; Uniprot ID:GLT12_HUMAN; ENSEMBL ID: ENSG00000119514; HGNC ID: 19877
Relate to Another Database: SFARIGene; denovo-db
Unigene EST Top
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
embryoid body1 / 7076114
blastocyst3 / 6231948
fetus10 / 56401217
neonate0 / 310970 
infant0 / 236200 
juvenile0 / 555560 
adult26 / 193912113
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
adrenal tumor0 / 127940 
bladder carcinoma0 / 174750 
breast (mammary gland) tumor0 / 941780 
cervical tumor0 / 343660 
chondrosarcoma0 / 828230 
colorectal tumor6 / 11424652
esophageal tumor0 / 172900 
gastrointestinal tumor3 / 11936925
germ cell tumor1 / 2638453
glioma1 / 1068839
head and neck tumor3 / 13630222
kidney tumor5 / 6895972
leukemia1 / 9584210
liver tumor0 / 963590 
lung tumor1 / 1031279
lymphoma2 / 7175527
non-neoplasia2 / 9725020
normal41 / 336030712
ovarian tumor4 / 7668252
pancreatic tumor2 / 10461619
primitive neuroectodermal tumor of the CNS0 / 1256800 
prostate cancer3 / 10268029
retinoblastoma0 / 463560 
skin tumor0 / 1249490 
soft tissue/muscle tissue tumor1 / 1251917
uterine tumor3 / 9025733
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
adipose tissue0 / 131060 
adrenal gland0 / 331970 
ascites0 / 400150 
bladder0 / 297570 
blood0 / 1234780 
bone0 / 716550 
bone marrow1 / 4880120
brain9 / 11009898
cervix0 / 481710 
connective tissue0 / 1492550 
ear0 / 162120 
embryonic tissue5 / 21572223
esophagus0 / 202090 
eye0 / 2110540 
heart1 / 8962611
intestine11 / 23447246
kidney6 / 21177728
larynx0 / 241450 
liver0 / 2077430 
lung17 / 33697450
lymph0 / 442700 
lymph node4 / 9161043
mammary gland0 / 1532710 
mouth1 / 6705214
muscle1 / 1077159
nerve0 / 157680 
ovary5 / 10205148
pancreas2 / 2148129
parathyroid0 / 205390 
pharynx0 / 413280 
pituitary gland1 / 1658560
placenta0 / 2808250 
prostate3 / 18934515
salivary gland2 / 2015599
skin0 / 2105740 
spleen0 / 539520 
stomach5 / 9661951
testis2 / 3304426
thymus0 / 811310 
thyroid2 / 4747342
tonsil0 / 169990 
trachea1 / 5241319
umbilical cord0 / 136800 
uterus4 / 23287817
vascular1 / 5178019
Microarray in BioGPS Top
Select probe  
  • Microarray Platform: GeneAtlas U133A, gcrma
  • Affymatrix Probe ID: 218885_s_at
Cell line Expression level Expression bar
721_B_lymphoblasts7.4
Adipocyte7.6
AdrenalCortex8.5
Adrenalgland6.45
Amygdala7.05
Appendix8.15
AtrioventricularNode6.15
BDCA4+_DentriticCells7.15
Bonemarrow7.8
BronchialEpithelialCells6.85
CD105+_Endothelial7.15
CD14+_Monocytes7.95
CD19+_BCells(neg._sel.)8.2
CD33+_Myeloid9.6
CD34+10.4
CD4+_Tcells17.85
CD56+_NKCells10.5
CD71+_EarlyErythroid7.1
CD8+_Tcells7.6
CardiacMyocytes11.3
Caudatenucleus6.85
Cerebellum6.2
CerebellumPeduncles8.8
CiliaryGanglion6.1
CingulateCortex7.65
Colorectaladenocarcinoma11
DorsalRootGanglion6.4
FetalThyroid10.3
Fetalbrain6.85
Fetalliver6.45
Fetallung7.2
GlobusPallidus5.6
Heart10.65
Hypothalamus7.7
Kidney6.2
Leukemia_chronicMyelogenousK-562104.95
Leukemia_promyelocytic-HL-606.75
Leukemialymphoblastic(MOLT-4)8.55
Liver10.15
Lung10.05
Lymphnode6.7
Lymphoma_burkitts(Daudi)9.7
Lymphoma_burkitts(Raji)10.85
MedullaOblongata6.75
OccipitalLobe6.5
OlfactoryBulb5.55
Ovary5.2
Pancreas6.7
PancreaticIslet8.4
ParietalLobe8.1
Pituitary8.95
Placenta7
Pons7.3
PrefrontalCortex8.5
Prostate8.95
Salivarygland6.15
SkeletalMuscle11.6
Skin6.4
SmoothMuscle8.55
Spinalcord7.9
SubthalamicNucleus7
SuperiorCervicalGanglion10.8
TemporalLobe7.05
Testis6.25
TestisGermCell6.1
TestisIntersitial6.75
TestisLeydigCell7.7
TestisSeminiferousTubule6.3
Thalamus7.8
Thymus5.75
Thyroid13.75
Tongue8.35
Tonsil7.5
Trachea60.3
TrigeminalGanglion8.4
Uterus5.8
UterusCorpus6.9
WholeBlood7.8
Wholebrain5.7
colon351.05
pineal_day24.86
pineal_night34.06
retina9.25
small_intestine77.2
Allen Brain Atlas Top
Human Whole Brain Microarrayview in Allen Brain Atlas
  • Probe id     Donor id      
  • Probe name: CUST_16530_PI416261804
  • Donor H0351.2001
  • Sex: Male     Age: 24 years     Race/Ethnicity: African American     Handedness: Left
  • Tissue Receipt Date: 7/29/2009     Serology: Pass      Tissue pH :6.72     Additional Medical Information :History of asthma
  • Postmortem Interval: 23 hours (estimated time of death to time that tissue is frozen)
  • Toxicology: Positive for atropine and caffeine, at levels usually not toxicologically significant
Tissue Expression(mean ± stddev) Expression Bar
Amygdala3.97 ± 0.84
Basal Forebrain4.05 ± 0.52
Basal Part of Pons4.5 ± 0.46
Cerebellar Cortex4.79 ± 0.38
Cerebellar Nuclei3.94 ± 0.71
Claustrum4.24 ± 0.89
Epithalamus4.06 ± 0.62
Frontal Lobe3.69 ± 0.76
Globus Pallidus4.02 ± 0.86
Hypothalamus3.5 ± 0.72
Insula3.47 ± 0.36
Limbic Lobe3.99 ± 0.76
Mesencephalon4.22 ± 0.75
Myelencephalon3.94 ± 0.61
Occipital Lobe4.29 ± 0.72
Parietal Lobe4.11 ± 0.73
Pontine Tegmentum3.94 ± 0.71
Striatum3.76 ± 0.8
Subthalamus4.55 ± 0.49
Temporal Lobe3.87 ± 0.74
Thalamus4.06 ± 0.51
White Matter5.18 ± 0.15
Mouse Brain ISH
Peptide Top
Peptide Name Peptide Lengh Peptide Start Peptide End Peptide Sequence Source
PAp00042244 18 61 78 REPVMPRPPVPANALGAR Peptide Atlas

Simple Query:


  (e.g. CHD8)

Syndromic Genes

Non-syndromic Genes

AutismKB Statistics

  • Studies: 1,036
  • Genes: 1,379
  • CNVs/SVs: 5,420
  • SNVs/Indels: 11,669
  • de novo Mutations: 5,669
  • Mosaics: 789
  • Linkage Regions: 172
  • Paper Collected: 6/30/2018
  • Last Update: 8/26/2018


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