AutismKB 2.0

Annotation Detail for C17orf42


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Basic Information Top
Gene Symbol:C17orf42 ( FLJ22729,MGC24674 )
Gene Full Name: chromosome 17 open reading frame 42
Band: -
Quick LinksEntrez ID:79736; OMIM: NA; Uniprot ID:CQ042_HUMAN; ENSEMBL ID: ENSG00000172171; HGNC ID:
Relate to Another Database: SFARIGene; denovo-db
Unigene EST Top
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
embryoid body1 / 7076114
blastocyst1 / 6231916
fetus23 / 56401240
neonate0 / 310970 
infant0 / 236200 
juvenile1 / 5555617
adult39 / 193912120
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
adrenal tumor0 / 127940 
bladder carcinoma1 / 1747557
breast (mammary gland) tumor1 / 9417810
cervical tumor1 / 3436629
chondrosarcoma4 / 8282348
colorectal tumor0 / 1142460 
esophageal tumor0 / 172900 
gastrointestinal tumor1 / 1193698
germ cell tumor6 / 26384522
glioma3 / 10688328
head and neck tumor0 / 1363020 
kidney tumor1 / 6895914
leukemia3 / 9584231
liver tumor1 / 9635910
lung tumor0 / 1031270 
lymphoma0 / 717550 
non-neoplasia0 / 972500 
normal64 / 336030719
ovarian tumor4 / 7668252
pancreatic tumor0 / 1046160 
primitive neuroectodermal tumor of the CNS2 / 12568015
prostate cancer3 / 10268029
retinoblastoma0 / 463560 
skin tumor3 / 12494924
soft tissue/muscle tissue tumor3 / 12519123
uterine tumor1 / 9025711
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
adipose tissue0 / 131060 
adrenal gland0 / 331970 
ascites0 / 400150 
bladder1 / 2975733
blood1 / 1234788
bone2 / 7165527
bone marrow2 / 4880140
brain10 / 11009899
cervix1 / 4817120
connective tissue3 / 14925520
ear0 / 162120 
embryonic tissue4 / 21572218
esophagus0 / 202090 
eye3 / 21105414
heart2 / 8962622
intestine5 / 23447221
kidney5 / 21177723
larynx0 / 241450 
liver2 / 2077439
lung5 / 33697414
lymph0 / 442700 
lymph node3 / 9161032
mammary gland3 / 15327119
mouth0 / 670520 
muscle0 / 1077150 
nerve1 / 1576863
ovary4 / 10205139
pancreas0 / 2148120 
parathyroid3 / 20539146
pharynx0 / 413280 
pituitary gland1 / 1658560
placenta9 / 28082532
prostate3 / 18934515
salivary gland2 / 2015599
skin7 / 21057433
spleen0 / 539520 
stomach0 / 966190 
testis5 / 33044215
thymus2 / 8113124
thyroid0 / 474730 
tonsil1 / 1699958
trachea0 / 524130 
umbilical cord0 / 136800 
uterus1 / 2328784
vascular3 / 5178057
Microarray in BioGPS Top
Select probe  
  • Microarray Platform: GeneAtlas U133A, gcrma
  • Affymatrix Probe ID: 219146_at
Cell line Expression level Expression bar
721_B_lymphoblasts46.1
Adipocyte5.3
AdrenalCortex6.2
Adrenalgland4.6
Amygdala6.3
Appendix5.95
AtrioventricularNode4.65
BDCA4+_DentriticCells10.65
Bonemarrow5.7
BronchialEpithelialCells5.3
CD105+_Endothelial6.4
CD14+_Monocytes7.9
CD19+_BCells(neg._sel.)11.55
CD33+_Myeloid6.65
CD34+7.4
CD4+_Tcells12.15
CD56+_NKCells7.6
CD71+_EarlyErythroid5.25
CD8+_Tcells8.4
CardiacMyocytes7.95
Caudatenucleus4.8
Cerebellum4.35
CerebellumPeduncles6.25
CiliaryGanglion4.3
CingulateCortex5.5
Colorectaladenocarcinoma6
DorsalRootGanglion4.5
FetalThyroid6.35
Fetalbrain5.25
Fetalliver4.75
Fetallung4.9
GlobusPallidus4.15
Heart7.75
Hypothalamus6
Kidney4.55
Leukemia_chronicMyelogenousK-5624.95
Leukemia_promyelocytic-HL-607.2
Leukemialymphoblastic(MOLT-4)7.45
Liver7.65
Lung5.7
Lymphnode10.85
Lymphoma_burkitts(Daudi)8.35
Lymphoma_burkitts(Raji)7.95
MedullaOblongata4.75
OccipitalLobe4.8
OlfactoryBulb4.2
Ovary3.8
Pancreas4.7
PancreaticIslet5.9
ParietalLobe5.85
Pituitary6.2
Placenta5.25
Pons5.3
PrefrontalCortex6.5
Prostate6.25
Salivarygland4.45
SkeletalMuscle7.05
Skin4.55
SmoothMuscle6.05
Spinalcord5.65
SubthalamicNucleus6.55
SuperiorCervicalGanglion6.9
TemporalLobe5.1
Testis4.6
TestisGermCell4.3
TestisIntersitial4.65
TestisLeydigCell5.4
TestisSeminiferousTubule4.6
Thalamus5.55
Thymus4.15
Thyroid7.05
Tongue5.7
Tonsil5.35
Trachea4.55
TrigeminalGanglion6
Uterus4.35
UterusCorpus5.15
WholeBlood5.8
Wholebrain4.3
colon5.55
pineal_day7.56
pineal_night9.58
retina6.5
small_intestine5.05
Allen Brain Atlas Top
Human Whole Brain Microarrayview in Allen Brain Atlas
  • Probe id     Donor id      
  • Probe name: A_24_P365048
  • Donor H0351.2001
  • Sex: Male     Age: 24 years     Race/Ethnicity: African American     Handedness: Left
  • Tissue Receipt Date: 7/29/2009     Serology: Pass      Tissue pH :6.72     Additional Medical Information :History of asthma
  • Postmortem Interval: 23 hours (estimated time of death to time that tissue is frozen)
  • Toxicology: Positive for atropine and caffeine, at levels usually not toxicologically significant
Tissue Expression(mean ± stddev) Expression Bar
Amygdala5.91 ± 0.48
Basal Forebrain6 ± 0.32
Basal Part of Pons6.2 ± 0.49
Cerebellar Cortex6.59 ± 0.22
Cerebellar Nuclei6.11 ± 0.55
Claustrum5.38 ± 0.81
Epithalamus6.34 ± 0.52
Frontal Lobe6.19 ± 0.5
Globus Pallidus5.94 ± 0.36
Hypothalamus6.29 ± 0.42
Insula6.29 ± 0.27
Limbic Lobe5.84 ± 0.51
Mesencephalon6.13 ± 0.47
Myelencephalon6 ± 0.55
Occipital Lobe5.98 ± 0.43
Parietal Lobe6.03 ± 0.54
Pontine Tegmentum6.1 ± 0.51
Striatum5.85 ± 0.43
Subthalamus6.06 ± 0.98
Temporal Lobe6.18 ± 0.44
Thalamus6.04 ± 0.52
White Matter6.63 ± 0.5
Mouse Brain ISH
Gene Symbol Brain Structure ID Brain Structure Name Express Desity/Level (Meatured by ISH) Express Bar
1110002N22RikCBCerebellum23.36
27.31
1110002N22RikCTXCerebral cortex51.2
36.44
1110002N22RikHIPHippocampal region33.35
35.47
1110002N22RikHPFHippocampal formation37.72
34.76
1110002N22RikHYHypothalamus26.59
20.63
1110002N22RikLSXLateral septal complex25.87
16.77
1110002N22RikMBMidbrain26.67
23.57
1110002N22RikMYMedulla33.53
35.26
1110002N22RikOLFOlfactory bulb48.67
38.78
1110002N22RikPPons29.25
30.81
1110002N22RikPALPallidum24.51
20.29
1110002N22RikRHPRetrohippocampal region47.13
35.1
1110002N22RiksAMYStriatum-like amygdalar nuclei27.68
17.71
1110002N22RikSTRStriatum31.52
21.13
1110002N22RikSTRdStriatum dorsal region30.42
20.89
1110002N22RikSTRvStriatum ventral region38.81
24.42
1110002N22RikTHThalamus25.85
20.08
Peptide Top

Simple Query:


  (e.g. CHD8)

Syndromic Genes

Non-syndromic Genes

AutismKB Statistics

  • Studies: 1,036
  • Genes: 1,379
  • CNVs/SVs: 5,420
  • SNVs/Indels: 11,669
  • de novo Mutations: 5,669
  • Mosaics: 789
  • Linkage Regions: 172
  • Paper Collected: 6/30/2018
  • Last Update: 8/26/2018


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