AutismKB 2.0

Annotation Detail for CLIP4


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Basic Information Top
Gene Symbol:CLIP4 ( FLJ21069,FLJ32705,RSNL2 )
Gene Full Name: CAP-GLY domain containing linker protein family, member 4
Band: 2p23.2
Quick LinksEntrez ID:79745; OMIM: NA; Uniprot ID:CLIP4_HUMAN; ENSEMBL ID: ENSG00000115295; HGNC ID: 26108
Relate to Another Database: SFARIGene; denovo-db
Unigene EST Top
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
embryoid body1 / 7076114
blastocyst0 / 623190 
fetus10 / 56401217
neonate1 / 3109732
infant0 / 236200 
juvenile0 / 555560 
adult87 / 193912144
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
adrenal tumor0 / 127940 
bladder carcinoma0 / 174750 
breast (mammary gland) tumor7 / 9417874
cervical tumor0 / 343660 
chondrosarcoma2 / 8282324
colorectal tumor1 / 1142468
esophageal tumor2 / 17290115
gastrointestinal tumor0 / 1193690 
germ cell tumor2 / 2638457
glioma3 / 10688328
head and neck tumor9 / 13630266
kidney tumor2 / 6895929
leukemia0 / 958420 
liver tumor2 / 9635920
lung tumor0 / 1031270 
lymphoma1 / 7175513
non-neoplasia7 / 9725071
normal137 / 336030740
ovarian tumor1 / 7668213
pancreatic tumor1 / 1046169
primitive neuroectodermal tumor of the CNS1 / 1256807
prostate cancer2 / 10268019
retinoblastoma2 / 4635643
skin tumor3 / 12494924
soft tissue/muscle tissue tumor2 / 12519115
uterine tumor0 / 902570 
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
adipose tissue2 / 13106152
adrenal gland0 / 331970 
ascites0 / 400150 
bladder1 / 2975733
blood0 / 1234780 
bone0 / 716550 
bone marrow1 / 4880120
brain48 / 110098943
cervix0 / 481710 
connective tissue5 / 14925533
ear0 / 162120 
embryonic tissue2 / 2157229
esophagus2 / 2020998
eye10 / 21105447
heart1 / 8962611
intestine2 / 2344728
kidney3 / 21177714
larynx1 / 2414541
liver2 / 2077439
lung5 / 33697414
lymph0 / 442700 
lymph node1 / 9161010
mammary gland10 / 15327165
mouth6 / 6705289
muscle6 / 10771555
nerve1 / 1576863
ovary0 / 1020510 
pancreas5 / 21481223
parathyroid1 / 2053948
pharynx1 / 4132824
pituitary gland3 / 16585180
placenta30 / 280825106
prostate10 / 18934552
salivary gland0 / 201550 
skin9 / 21057442
spleen0 / 539520 
stomach0 / 966190 
testis21 / 33044263
thymus0 / 811310 
thyroid2 / 4747342
tonsil0 / 169990 
trachea15 / 52413286
umbilical cord0 / 136800 
uterus4 / 23287817
vascular1 / 5178019
Microarray in BioGPS Top
Select probe  
  • Microarray Platform: GeneAtlas U133A, gcrma
  • Affymatrix Probe ID: 219944_at
Cell line Expression level Expression bar
721_B_lymphoblasts9.55
Adipocyte8
AdrenalCortex16.1
Adrenalgland6.8
Amygdala7.05
Appendix8.25
AtrioventricularNode13.25
BDCA4+_DentriticCells7.85
Bonemarrow8.45
BronchialEpithelialCells10.15
CD105+_Endothelial7.95
CD14+_Monocytes8.9
CD19+_BCells(neg._sel.)8
CD33+_Myeloid11.75
CD34+9.35
CD4+_Tcells9.5
CD56+_NKCells11.85
CD71+_EarlyErythroid8.1
CD8+_Tcells7.8
CardiacMyocytes9.85
Caudatenucleus7.2
Cerebellum6.4
CerebellumPeduncles9.2
CiliaryGanglion6.3
CingulateCortex8.3
Colorectaladenocarcinoma7.25
DorsalRootGanglion6.5
FetalThyroid7.2
Fetalbrain6.9
Fetalliver6.65
Fetallung6.1
GlobusPallidus8.3
Heart10.35
Hypothalamus8.6
Kidney6.65
Leukemia_chronicMyelogenousK-5627.3
Leukemia_promyelocytic-HL-607.15
Leukemialymphoblastic(MOLT-4)6.1
Liver10.65
Lung7.4
Lymphnode6.15
Lymphoma_burkitts(Daudi)13
Lymphoma_burkitts(Raji)11.15
MedullaOblongata7.35
OccipitalLobe7.25
OlfactoryBulb6.4
Ovary5.35
Pancreas6.5
PancreaticIslet8.65
ParietalLobe9.25
Pituitary10.65
Placenta9.85
Pons7.7
PrefrontalCortex9.65
Prostate9.05
Salivarygland7.9
SkeletalMuscle11.55
Skin6.4
SmoothMuscle9.8
Spinalcord8.6
SubthalamicNucleus10.45
SuperiorCervicalGanglion9.2
TemporalLobe7.55
Testis15.7
TestisGermCell16.9
TestisIntersitial13.95
TestisLeydigCell10.05
TestisSeminiferousTubule12.8
Thalamus8.25
Thymus4.85
Thyroid9.8
Tongue8.1
Tonsil8.35
Trachea8
TrigeminalGanglion8.55
Uterus5.95
UterusCorpus7.3
WholeBlood6.95
Wholebrain6.35
colon7.95
pineal_day10.6
pineal_night10.76
retina9.7
small_intestine7.55
Allen Brain Atlas Top
Human Whole Brain Microarrayview in Allen Brain Atlas
  • Probe id     Donor id      
  • Probe name: CUST_8535_PI416261804
  • Donor H0351.2001
  • Sex: Male     Age: 24 years     Race/Ethnicity: African American     Handedness: Left
  • Tissue Receipt Date: 7/29/2009     Serology: Pass      Tissue pH :6.72     Additional Medical Information :History of asthma
  • Postmortem Interval: 23 hours (estimated time of death to time that tissue is frozen)
  • Toxicology: Positive for atropine and caffeine, at levels usually not toxicologically significant
Tissue Expression(mean ± stddev) Expression Bar
Amygdala7.22 ± 0.41
Basal Forebrain7.04 ± 0.15
Basal Part of Pons6.69 ± 0.29
Cerebellar Cortex6.57 ± 0.2
Cerebellar Nuclei7.23 ± 0.16
Claustrum6.71 ± 0.48
Epithalamus6.43 ± 0.19
Frontal Lobe6.66 ± 0.35
Globus Pallidus7.6 ± 0.22
Hypothalamus6.68 ± 0.33
Insula6.54 ± 0.23
Limbic Lobe6.93 ± 0.32
Mesencephalon6.9 ± 0.32
Myelencephalon6.79 ± 0.38
Occipital Lobe7.09 ± 0.32
Parietal Lobe6.87 ± 0.32
Pontine Tegmentum6.88 ± 0.38
Striatum7.4 ± 0.45
Subthalamus6.99 ± 0.2
Temporal Lobe6.64 ± 0.3
Thalamus6.6 ± 0.33
White Matter7.71 ± 0.27
Mouse Brain ISH
Gene Symbol Brain Structure ID Brain Structure Name Express Desity/Level (Meatured by ISH) Express Bar
Rsnl2CBCerebellum31.2
51
Rsnl2CTXCerebral cortex69.62
55.19
Rsnl2HIPHippocampal region68.88
93.35
Rsnl2HPFHippocampal formation73.73
86.37
Rsnl2HYHypothalamus59.75
36.83
Rsnl2LSXLateral septal complex69.04
40.81
Rsnl2MBMidbrain52.36
39.48
Rsnl2MYMedulla56.99
62.91
Rsnl2OLFOlfactory bulb88.75
92.84
Rsnl2PPons54.64
52.91
Rsnl2PALPallidum70.48
54.4
Rsnl2RHPRetrohippocampal region72.96
68.12
Rsnl2sAMYStriatum-like amygdalar nuclei96.66
73.57
Rsnl2STRStriatum100
100
Rsnl2STRdStriatum dorsal region100
100
Rsnl2STRvStriatum ventral region100
100
Rsnl2THThalamus39.86
21.38
Peptide Top

Simple Query:


  (e.g. CHD8)

Syndromic Genes

Non-syndromic Genes

AutismKB Statistics

  • Studies: 1,036
  • Genes: 1,379
  • CNVs/SVs: 5,420
  • SNVs/Indels: 11,669
  • de novo Mutations: 5,669
  • Mosaics: 789
  • Linkage Regions: 172
  • Paper Collected: 6/30/2018
  • Last Update: 8/26/2018


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