AutismKB 2.0

Annotation Detail for C15orf29


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Basic Information Top
Gene Symbol:C15orf29 ( FLJ22557,MGC117356 )
Gene Full Name: chromosome 15 open reading frame 29
Band: 15q14
Quick LinksEntrez ID:79768; OMIM: NA; Uniprot ID:CO029_HUMAN; ENSEMBL ID: ENSG00000134152; HGNC ID:
Relate to Another Database: SFARIGene; denovo-db
Unigene EST Top
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
embryoid body2 / 7076128
blastocyst2 / 6231932
fetus18 / 56401231
neonate1 / 3109732
infant0 / 236200 
juvenile0 / 555560 
adult79 / 193912140
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
adrenal tumor0 / 127940 
bladder carcinoma3 / 17475171
breast (mammary gland) tumor2 / 9417821
cervical tumor0 / 343660 
chondrosarcoma5 / 8282360
colorectal tumor2 / 11424617
esophageal tumor0 / 172900 
gastrointestinal tumor4 / 11936933
germ cell tumor3 / 26384511
glioma4 / 10688337
head and neck tumor2 / 13630214
kidney tumor1 / 6895914
leukemia2 / 9584220
liver tumor4 / 9635941
lung tumor0 / 1031270 
lymphoma1 / 7175513
non-neoplasia0 / 972500 
normal139 / 336030741
ovarian tumor0 / 766820 
pancreatic tumor0 / 1046160 
primitive neuroectodermal tumor of the CNS1 / 1256807
prostate cancer0 / 1026800 
retinoblastoma0 / 463560 
skin tumor1 / 1249498
soft tissue/muscle tissue tumor0 / 1251910 
uterine tumor4 / 9025744
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
adipose tissue0 / 131060 
adrenal gland0 / 331970 
ascites0 / 400150 
bladder1 / 2975733
blood9 / 12347872
bone2 / 7165527
bone marrow3 / 4880161
brain22 / 110098919
cervix0 / 481710 
connective tissue4 / 14925526
ear0 / 162120 
embryonic tissue10 / 21572246
esophagus0 / 202090 
eye8 / 21105437
heart1 / 8962611
intestine5 / 23447221
kidney4 / 21177718
larynx2 / 2414582
liver5 / 20774324
lung13 / 33697438
lymph0 / 442700 
lymph node4 / 9161043
mammary gland4 / 15327126
mouth0 / 670520 
muscle1 / 1077159
nerve2 / 15768126
ovary0 / 1020510 
pancreas3 / 21481213
parathyroid2 / 2053997
pharynx1 / 4132824
pituitary gland2 / 16585120
placenta35 / 280825124
prostate3 / 18934515
salivary gland0 / 201550 
skin7 / 21057433
spleen0 / 539520 
stomach10 / 96619103
testis9 / 33044227
thymus2 / 8113124
thyroid0 / 474730 
tonsil0 / 169990 
trachea0 / 524130 
umbilical cord0 / 136800 
uterus6 / 23287825
vascular3 / 5178057
Microarray in BioGPS Top
Select probe  
  • Microarray Platform: GeneAtlas U133A, gcrma
  • Affymatrix Probe ID: 218791_s_at
Cell line Expression level Expression bar
721_B_lymphoblasts6.95
Adipocyte5.9
AdrenalCortex6.9
Adrenalgland5.1
Amygdala6.45
Appendix9.5
AtrioventricularNode5.25
BDCA4+_DentriticCells6.2
Bonemarrow6.15
BronchialEpithelialCells5.7
CD105+_Endothelial6.15
CD14+_Monocytes6.3
CD19+_BCells(neg._sel.)6.15
CD33+_Myeloid7.9
CD34+13.65
CD4+_Tcells6.05
CD56+_NKCells7.05
CD71+_EarlyErythroid5.65
CD8+_Tcells5.65
CardiacMyocytes8.95
Caudatenucleus5.35
Cerebellum4.9
CerebellumPeduncles7
CiliaryGanglion4.65
CingulateCortex6.25
Colorectaladenocarcinoma5.9
DorsalRootGanglion4.95
FetalThyroid5.85
Fetalbrain14.6
Fetalliver5.25
Fetallung4.95
GlobusPallidus4.55
Heart8.65
Hypothalamus8.2
Kidney5.1
Leukemia_chronicMyelogenousK-5625.3
Leukemia_promyelocytic-HL-605.25
Leukemialymphoblastic(MOLT-4)4.7
Liver8.5
Lung6.45
Lymphnode4.95
Lymphoma_burkitts(Daudi)7.6
Lymphoma_burkitts(Raji)8.75
MedullaOblongata5.45
OccipitalLobe5.5
OlfactoryBulb4.75
Ovary4.1
Pancreas4.85
PancreaticIslet6.35
ParietalLobe6.55
Pituitary7.1
Placenta5.95
Pons5.8
PrefrontalCortex9.65
Prostate6.9
Salivarygland4.9
SkeletalMuscle7.6
Skin5
SmoothMuscle6.6
Spinalcord6.5
SubthalamicNucleus5.45
SuperiorCervicalGanglion7.85
TemporalLobe5.65
Testis5.05
TestisGermCell4.9
TestisIntersitial5.05
TestisLeydigCell5.95
TestisSeminiferousTubule5
Thalamus6.2
Thymus4.5
Thyroid7.45
Tongue6.2
Tonsil5.8
Trachea4.95
TrigeminalGanglion7.05
Uterus4.95
UterusCorpus5.75
WholeBlood12.85
Wholebrain5.2
colon6.1
pineal_day7.52
pineal_night7.42
retina7.275
small_intestine5.8
Allen Brain Atlas Top
Human Whole Brain Microarrayview in Allen Brain Atlas
  • Probe id     Donor id      
  • Probe name: A_23_P77286
  • Donor H0351.2001
  • Sex: Male     Age: 24 years     Race/Ethnicity: African American     Handedness: Left
  • Tissue Receipt Date: 7/29/2009     Serology: Pass      Tissue pH :6.72     Additional Medical Information :History of asthma
  • Postmortem Interval: 23 hours (estimated time of death to time that tissue is frozen)
  • Toxicology: Positive for atropine and caffeine, at levels usually not toxicologically significant
Tissue Expression(mean ± stddev) Expression Bar
Amygdala3.79 ± 0.89
Basal Forebrain3.53 ± 0.47
Basal Part of Pons3.35 ± 0.49
Cerebellar Cortex4.26 ± 0.32
Cerebellar Nuclei3.68 ± 0.64
Claustrum3.56 ± 0.76
Epithalamus3.56 ± 0.48
Frontal Lobe3.71 ± 0.62
Globus Pallidus3.31 ± 0.34
Hypothalamus3.52 ± 0.52
Insula3.67 ± 0.64
Limbic Lobe3.43 ± 0.58
Mesencephalon3.77 ± 0.64
Myelencephalon3.71 ± 0.59
Occipital Lobe3.59 ± 0.71
Parietal Lobe3.74 ± 0.62
Pontine Tegmentum3.69 ± 0.67
Striatum3.08 ± 0.69
Subthalamus4.69 ± 1.52
Temporal Lobe3.8 ± 0.53
Thalamus3.8 ± 0.54
White Matter4.21 ± 0.75
Mouse Brain ISH
Gene Symbol Brain Structure ID Brain Structure Name Express Desity/Level (Meatured by ISH) Express Bar
2410042D21RikCBCerebellum0.82
1.29
2410042D21RikCTXCerebral cortex0.27
0.33
2410042D21RikHIPHippocampal region0.14
0.15
2410042D21RikHPFHippocampal formation0.15
0.14
2410042D21RikHYHypothalamus0.64
1.8
2410042D21RikLSXLateral septal complex0
0
2410042D21RikMBMidbrain0.31
0.47
2410042D21RikMYMedulla0.69
1.32
2410042D21RikOLFOlfactory bulb1.52
1.43
2410042D21RikPPons1.43
3.44
2410042D21RikPALPallidum0.06
0.07
2410042D21RikRHPRetrohippocampal region0.15
0.09
2410042D21RiksAMYStriatum-like amygdalar nuclei0.41
0.78
2410042D21RikSTRStriatum0.24
0.28
2410042D21RikSTRdStriatum dorsal region0.05
0.05
2410042D21RikSTRvStriatum ventral region0.93
0.79
2410042D21RikTHThalamus0.19
0.41
Peptide Top

Simple Query:


  (e.g. CHD8)

Syndromic Genes

Non-syndromic Genes

AutismKB Statistics

  • Studies: 1,036
  • Genes: 1,379
  • CNVs/SVs: 5,420
  • SNVs/Indels: 11,669
  • de novo Mutations: 5,669
  • Mosaics: 789
  • Linkage Regions: 172
  • Paper Collected: 6/30/2018
  • Last Update: 8/26/2018


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