AutismKB 2.0

Annotation Detail for SLTM


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Basic Information Top
Gene Symbol:SLTM ( DKFZp762G052,FLJ10005,FLJ13213,Met )
Gene Full Name: SAFB-like, transcription modulator
Band: 15q22.1
Quick LinksEntrez ID:79811; OMIM: NA; Uniprot ID:SLTM_HUMAN; ENSEMBL ID: ENSG00000137776; HGNC ID: 20709
Relate to Another Database: SFARIGene; denovo-db
Unigene EST Top
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
embryoid body8 / 70761113
blastocyst8 / 62319128
fetus44 / 56401278
neonate2 / 3109764
infant0 / 236200 
juvenile5 / 5555689
adult152 / 193912178
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
adrenal tumor0 / 127940 
bladder carcinoma1 / 1747557
breast (mammary gland) tumor6 / 9417863
cervical tumor2 / 3436658
chondrosarcoma11 / 82823132
colorectal tumor12 / 114246105
esophageal tumor2 / 17290115
gastrointestinal tumor9 / 11936975
germ cell tumor29 / 263845109
glioma5 / 10688346
head and neck tumor20 / 136302146
kidney tumor2 / 6895929
leukemia13 / 95842135
liver tumor3 / 9635931
lung tumor4 / 10312738
lymphoma7 / 7175597
non-neoplasia5 / 9725051
normal226 / 336030767
ovarian tumor5 / 7668265
pancreatic tumor2 / 10461619
primitive neuroectodermal tumor of the CNS6 / 12568047
prostate cancer5 / 10268048
retinoblastoma3 / 4635664
skin tumor5 / 12494940
soft tissue/muscle tissue tumor8 / 12519163
uterine tumor6 / 9025766
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
adipose tissue0 / 131060 
adrenal gland2 / 3319760
ascites2 / 4001549
bladder1 / 2975733
blood8 / 12347864
bone6 / 7165583
bone marrow3 / 4880161
brain49 / 110098944
cervix4 / 4817183
connective tissue10 / 14925566
ear3 / 16212185
embryonic tissue26 / 215722120
esophagus2 / 2020998
eye13 / 21105461
heart8 / 8962689
intestine26 / 234472110
kidney15 / 21177770
larynx3 / 24145124
liver16 / 20774377
lung24 / 33697471
lymph7 / 44270158
lymph node10 / 91610109
mammary gland12 / 15327178
mouth13 / 67052193
muscle11 / 107715102
nerve3 / 15768190
ovary6 / 10205158
pancreas5 / 21481223
parathyroid2 / 2053997
pharynx4 / 4132896
pituitary gland1 / 1658560
placenta13 / 28082546
prostate13 / 18934568
salivary gland0 / 201550 
skin9 / 21057442
spleen5 / 5395292
stomach9 / 9661993
testis22 / 33044266
thymus4 / 8113149
thyroid6 / 47473126
tonsil2 / 16999117
trachea2 / 5241338
umbilical cord2 / 13680146
uterus15 / 23287864
vascular1 / 5178019
Microarray in BioGPS Top
Select probe  
  • Microarray Platform: GeneAtlas U133A, gcrma
  • Affymatrix Probe ID: 217828_at
Cell line Expression level Expression bar
721_B_lymphoblasts146.5
Adipocyte22.2
AdrenalCortex15.85
Adrenalgland13.8
Amygdala48.65
Appendix21.6
AtrioventricularNode13.2
BDCA4+_DentriticCells191.65
Bonemarrow14.85
BronchialEpithelialCells24.85
CD105+_Endothelial133.7
CD14+_Monocytes63.55
CD19+_BCells(neg._sel.)125.7
CD33+_Myeloid194.1
CD34+317.65
CD4+_Tcells128.3
CD56+_NKCells287.25
CD71+_EarlyErythroid45.75
CD8+_Tcells206.9
CardiacMyocytes20.15
Caudatenucleus24.25
Cerebellum11.9
CerebellumPeduncles24.45
CiliaryGanglion4.8
CingulateCortex23.55
Colorectaladenocarcinoma48.65
DorsalRootGanglion13
FetalThyroid32.15
Fetalbrain30.1
Fetalliver29.25
Fetallung48.8
GlobusPallidus11
Heart19.8
Hypothalamus90.05
Kidney7.25
Leukemia_chronicMyelogenousK-56235.35
Leukemia_promyelocytic-HL-6059.75
Leukemialymphoblastic(MOLT-4)84.15
Liver20.5
Lung18.6
Lymphnode76.15
Lymphoma_burkitts(Daudi)114.15
Lymphoma_burkitts(Raji)36.4
MedullaOblongata22.75
OccipitalLobe22.8
OlfactoryBulb23.75
Ovary12.9
Pancreas18.15
PancreaticIslet47.2
ParietalLobe21
Pituitary49.75
Placenta17.35
Pons16.4
PrefrontalCortex65.25
Prostate29.55
Salivarygland22.25
SkeletalMuscle7.1
Skin12.2
SmoothMuscle21.05
Spinalcord32.75
SubthalamicNucleus14.25
SuperiorCervicalGanglion20.55
TemporalLobe14.15
Testis18.2
TestisGermCell32.65
TestisIntersitial24.35
TestisLeydigCell20.6
TestisSeminiferousTubule22.15
Thalamus25.95
Thymus44.2
Thyroid100.1
Tongue18.55
Tonsil30.95
Trachea19.35
TrigeminalGanglion11.15
Uterus85.5
UterusCorpus13.25
WholeBlood52.95
Wholebrain18.2
colon22.8
pineal_day142.06
pineal_night150.08
retina33.75
small_intestine22
Allen Brain Atlas Top
Human Whole Brain Microarrayview in Allen Brain Atlas
  • Probe id     Donor id      
  • Probe name: A_24_P210577
  • Donor H0351.2001
  • Sex: Male     Age: 24 years     Race/Ethnicity: African American     Handedness: Left
  • Tissue Receipt Date: 7/29/2009     Serology: Pass      Tissue pH :6.72     Additional Medical Information :History of asthma
  • Postmortem Interval: 23 hours (estimated time of death to time that tissue is frozen)
  • Toxicology: Positive for atropine and caffeine, at levels usually not toxicologically significant
Tissue Expression(mean ± stddev) Expression Bar
Amygdala5.71 ± 0.47
Basal Forebrain5.63 ± 0.21
Basal Part of Pons5.67 ± 0.26
Cerebellar Cortex5.6 ± 0.25
Cerebellar Nuclei5.91 ± 0.3
Claustrum6.02 ± 0.53
Epithalamus5.86 ± 0.21
Frontal Lobe5.66 ± 0.35
Globus Pallidus6.26 ± 0.19
Hypothalamus5.52 ± 0.25
Insula5.56 ± 0.21
Limbic Lobe5.65 ± 0.32
Mesencephalon5.77 ± 0.38
Myelencephalon5.67 ± 0.35
Occipital Lobe5.85 ± 0.4
Parietal Lobe5.69 ± 0.34
Pontine Tegmentum5.7 ± 0.42
Striatum5.87 ± 0.41
Subthalamus5.93 ± 0.45
Temporal Lobe5.66 ± 0.33
Thalamus5.78 ± 0.31
White Matter6.69 ± 0.28
Mouse Brain ISH
Gene Symbol Brain Structure ID Brain Structure Name Express Desity/Level (Meatured by ISH) Express Bar
SltmCBCerebellum30.43
40.08
SltmCTXCerebral cortex100
97.13
SltmHIPHippocampal region100
100
SltmHPFHippocampal formation100
100
SltmHYHypothalamus80.16
70.94
SltmLSXLateral septal complex100
100
SltmMBMidbrain31.23
32.25
SltmMYMedulla20.97
28.63
SltmOLFOlfactory bulb100
100
SltmPPons32.5
39.65
SltmPALPallidum75.55
68.22
SltmRHPRetrohippocampal region100
100
SltmsAMYStriatum-like amygdalar nuclei100
100
SltmSTRStriatum90.19
70.51
SltmSTRdStriatum dorsal region68.04
49.82
SltmSTRvStriatum ventral region100
100
SltmTHThalamus67.74
62.52
Peptide Top
Peptide Name Peptide Lengh Peptide Start Peptide End Peptide Sequence Source
PAp00001487 15 426 440 CYGIVTMSSSTEVSR Peptide Atlas
SLTM_HUMAN_281 12 281 292 DGQDAIAQSPEK PRIDE

Simple Query:


  (e.g. CHD8)

Syndromic Genes

Non-syndromic Genes

AutismKB Statistics

  • Studies: 1,036
  • Genes: 1,379
  • CNVs/SVs: 5,420
  • SNVs/Indels: 11,669
  • de novo Mutations: 5,669
  • Mosaics: 789
  • Linkage Regions: 172
  • Paper Collected: 6/30/2018
  • Last Update: 8/26/2018


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