AutismKB 2.0

Annotation Detail for AGBL2


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Basic Information Top
Gene Symbol:AGBL2 ( FLJ23598 )
Gene Full Name: ATP/GTP binding protein-like 2
Band: 11p11.2
Quick LinksEntrez ID:79841; OMIM: NA; Uniprot ID:CBPC2_HUMAN; ENSEMBL ID: ENSG00000165923; HGNC ID: 26296
Relate to Another Database: SFARIGene; denovo-db
Unigene EST Top
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
embryoid body0 / 707610 
blastocyst2 / 6231932
fetus3 / 5640125
neonate0 / 310970 
infant0 / 236200 
juvenile0 / 555560 
adult6 / 19391213
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
adrenal tumor0 / 127940 
bladder carcinoma0 / 174750 
breast (mammary gland) tumor0 / 941780 
cervical tumor0 / 343660 
chondrosarcoma0 / 828230 
colorectal tumor0 / 1142460 
esophageal tumor0 / 172900 
gastrointestinal tumor0 / 1193690 
germ cell tumor0 / 2638450 
glioma0 / 1068830 
head and neck tumor0 / 1363020 
kidney tumor0 / 689590 
leukemia1 / 9584210
liver tumor0 / 963590 
lung tumor0 / 1031270 
lymphoma0 / 717550 
non-neoplasia0 / 972500 
normal26 / 33603077
ovarian tumor0 / 766820 
pancreatic tumor1 / 1046169
primitive neuroectodermal tumor of the CNS0 / 1256800 
prostate cancer1 / 1026809
retinoblastoma0 / 463560 
skin tumor0 / 1249490 
soft tissue/muscle tissue tumor0 / 1251910 
uterine tumor0 / 902570 
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
adipose tissue0 / 131060 
adrenal gland0 / 331970 
ascites0 / 400150 
bladder0 / 297570 
blood2 / 12347816
bone0 / 716550 
bone marrow0 / 488010 
brain3 / 11009892
cervix1 / 4817120
connective tissue0 / 1492550 
ear0 / 162120 
embryonic tissue2 / 2157229
esophagus0 / 202090 
eye0 / 2110540 
heart2 / 8962622
intestine0 / 2344720 
kidney1 / 2117774
larynx0 / 241450 
liver0 / 2077430 
lung3 / 3369748
lymph0 / 442700 
lymph node1 / 9161010
mammary gland0 / 1532710 
mouth0 / 670520 
muscle1 / 1077159
nerve0 / 157680 
ovary0 / 1020510 
pancreas1 / 2148124
parathyroid0 / 205390 
pharynx1 / 4132824
pituitary gland0 / 165850 
placenta0 / 2808250 
prostate1 / 1893455
salivary gland0 / 201550 
skin0 / 2105740 
spleen0 / 539520 
stomach0 / 966190 
testis41 / 330442124
thymus2 / 8113124
thyroid0 / 474730 
tonsil0 / 169990 
trachea9 / 52413171
umbilical cord0 / 136800 
uterus1 / 2328784
vascular0 / 517800 
Microarray in BioGPS Top
Select probe  
  • Microarray Platform: GeneAtlas U133A, gcrma
  • Affymatrix Probe ID: 220390_at
Cell line Expression level Expression bar
721_B_lymphoblasts6.15
Adipocyte5.05
AdrenalCortex5.7
Adrenalgland4.4
Amygdala5.35
Appendix5.65
AtrioventricularNode4.6
BDCA4+_DentriticCells6.15
Bonemarrow5.2
BronchialEpithelialCells5
CD105+_Endothelial5.25
CD14+_Monocytes5.5
CD19+_BCells(neg._sel.)7.4
CD33+_Myeloid6.6
CD34+6.2
CD4+_Tcells5.9
CD56+_NKCells6.35
CD71+_EarlyErythroid4.9
CD8+_Tcells5.6
CardiacMyocytes7.75
Caudatenucleus4.65
Cerebellum4.25
CerebellumPeduncles6.1
CiliaryGanglion4.05
CingulateCortex5.35
Colorectaladenocarcinoma5.2
DorsalRootGanglion4.45
FetalThyroid5.15
Fetalbrain5.15
Fetalliver4.5
Fetallung4.45
GlobusPallidus3.95
Heart7.45
Hypothalamus5.8
Kidney4.25
Leukemia_chronicMyelogenousK-5624.7
Leukemia_promyelocytic-HL-604.6
Leukemialymphoblastic(MOLT-4)4.05
Liver7
Lung5.65
Lymphnode4.3
Lymphoma_burkitts(Daudi)6.6
Lymphoma_burkitts(Raji)7.45
MedullaOblongata4.65
OccipitalLobe4.55
OlfactoryBulb4.1
Ovary3.5
Pancreas4.2
PancreaticIslet5.5
ParietalLobe5.55
Pituitary6
Placenta5.35
Pons5
PrefrontalCortex6.15
Prostate5.95
Salivarygland4.25
SkeletalMuscle7.1
Skin4.5
SmoothMuscle5.8
Spinalcord5.55
SubthalamicNucleus4.9
SuperiorCervicalGanglion7
TemporalLobe4.8
Testis6.4
TestisGermCell41.05
TestisIntersitial31.2
TestisLeydigCell10.6
TestisSeminiferousTubule21.75
Thalamus5.3
Thymus4
Thyroid6.25
Tongue5.25
Tonsil5.1
Trachea4.35
TrigeminalGanglion6.75
Uterus4.15
UterusCorpus4.85
WholeBlood5.55
Wholebrain4.1
colon5.3
pineal_day6.46
pineal_night6.38
retina6.25
small_intestine4.95
Allen Brain Atlas Top
Human Whole Brain Microarrayview in Allen Brain Atlas
  • Probe id     Donor id      
  • Probe name: CUST_2179_PI416261804
  • Donor H0351.2001
  • Sex: Male     Age: 24 years     Race/Ethnicity: African American     Handedness: Left
  • Tissue Receipt Date: 7/29/2009     Serology: Pass      Tissue pH :6.72     Additional Medical Information :History of asthma
  • Postmortem Interval: 23 hours (estimated time of death to time that tissue is frozen)
  • Toxicology: Positive for atropine and caffeine, at levels usually not toxicologically significant
Tissue Expression(mean ± stddev) Expression Bar
Amygdala4.37 ± 0.76
Basal Forebrain4.19 ± 0.41
Basal Part of Pons3.99 ± 0.36
Cerebellar Cortex3.86 ± 0.5
Cerebellar Nuclei4.36 ± 0.44
Claustrum4.55 ± 0.6
Epithalamus4.38 ± 0.75
Frontal Lobe4.12 ± 0.57
Globus Pallidus4.46 ± 0.55
Hypothalamus3.93 ± 0.29
Insula3.9 ± 0.54
Limbic Lobe4.17 ± 0.56
Mesencephalon4.35 ± 0.49
Myelencephalon4.21 ± 0.59
Occipital Lobe4.19 ± 0.58
Parietal Lobe4.07 ± 0.67
Pontine Tegmentum4.07 ± 0.6
Striatum4.52 ± 0.53
Subthalamus3.94 ± 0.69
Temporal Lobe4.03 ± 0.7
Thalamus4.18 ± 0.49
White Matter3.96 ± 0.32
Mouse Brain ISH
Gene Symbol Brain Structure ID Brain Structure Name Express Desity/Level (Meatured by ISH) Express Bar
Agbl2RHPRetrohippocampal region0.4
0.41
Agbl2sAMYStriatum-like amygdalar nuclei0.35
0.16
Peptide Top

Simple Query:


  (e.g. CHD8)

Syndromic Genes

Non-syndromic Genes

AutismKB Statistics

  • Studies: 1,036
  • Genes: 1,379
  • CNVs/SVs: 5,420
  • SNVs/Indels: 11,669
  • de novo Mutations: 5,669
  • Mosaics: 789
  • Linkage Regions: 172
  • Paper Collected: 6/30/2018
  • Last Update: 8/26/2018


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