Annotation Detail for SNX22
Basic Information Top
| Gene Symbol: | SNX22 ( FLJ13952 ) |
|---|---|
| Gene Full Name: | sorting nexin 22 |
| Band: | 15q22.31 |
| Quick Links | Entrez ID:79856; OMIM: NA; Uniprot ID:SNX22_HUMAN; ENSEMBL ID: ENSG00000157734; HGNC ID: 16315 |
| Relate to Another Database: | SFARIGene; denovo-db |
- Unigene ID: Hs.708268
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
 | |||
| embryoid body | 2 / 70761 | 28 |  |
| blastocyst | 1 / 62319 | 16 | |
| fetus | 12 / 564012 | 21 | |
| neonate | 0 / 31097 | 0 | |
| infant | 0 / 23620 | 0 | |
| juvenile | 1 / 55556 | 17 | |
| adult | 319 / 1939121 | 164 |  |
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
| |||
| adrenal tumor | 0 / 12794 | 0 | |
| bladder carcinoma | 0 / 17475 | 0 | |
| breast (mammary gland) tumor | 2 / 94178 | 21 | |
| cervical tumor | 0 / 34366 | 0 | |
| chondrosarcoma | 0 / 82823 | 0 | |
| colorectal tumor | 20 / 114246 | 175 | |
| esophageal tumor | 1 / 17290 | 57 | |
| gastrointestinal tumor | 7 / 119369 | 58 | |
| germ cell tumor | 12 / 263845 | 45 | |
| glioma | 12 / 106883 | 112 | |
| head and neck tumor | 24 / 136302 | 176 | |
| kidney tumor | 1 / 68959 | 14 | |
| leukemia | 13 / 95842 | 135 | |
| liver tumor | 0 / 96359 | 0 | |
| lung tumor | 5 / 103127 | 48 | |
| lymphoma | 4 / 71755 | 55 | |
| non-neoplasia | 6 / 97250 | 61 | |
| normal | 237 / 3360307 | 70 | |
| ovarian tumor | 15 / 76682 | 195 | |
| pancreatic tumor | 3 / 104616 | 28 | |
| primitive neuroectodermal tumor of the CNS | 2 / 125680 | 15 | |
| prostate cancer | 14 / 102680 | 136 | |
| retinoblastoma | 1 / 46356 | 21 | |
| skin tumor | 1 / 124949 | 8 |  |
| soft tissue/muscle tissue tumor | 0 / 125191 | 0 | |
| uterine tumor | 7 / 90257 | 77 | |
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
| |||
| adipose tissue | 0 / 13106 | 0 | |
| adrenal gland | 1 / 33197 | 30 | |
| ascites | 5 / 40015 | 124 | |
| bladder | 10 / 29757 | 336 |  |
| blood | 12 / 123478 | 97 | |
| bone | 0 / 71655 | 0 | |
| bone marrow | 0 / 48801 | 0 | |
| brain | 32 / 1100989 | 29 | |
| cervix | 0 / 48171 | 0 | |
| connective tissue | 0 / 149255 | 0 | |
| ear | 0 / 16212 | 0 | |
| embryonic tissue | 3 / 215722 | 13 | |
| esophagus | 1 / 20209 | 49 | |
| eye | 2 / 211054 | 9 | |
| heart | 2 / 89626 | 22 | |
| intestine | 151 / 234472 | 644 | |
| kidney | 1 / 211777 | 4 | |
| larynx | 10 / 24145 | 414 | |
| liver | 1 / 207743 | 4 | |
| lung | 12 / 336974 | 35 | |
| lymph | 2 / 44270 | 45 | |
| lymph node | 6 / 91610 | 65 | |
| mammary gland | 11 / 153271 | 71 | |
| mouth | 1 / 67052 | 14 | |
| muscle | 0 / 107715 | 0 | |
| nerve | 0 / 15768 | 0 | |
| ovary | 16 / 102051 | 156 | |
| pancreas | 7 / 214812 | 32 | |
| parathyroid | 0 / 20539 | 0 | |
| pharynx | 4 / 41328 | 96 | |
| pituitary gland | 0 / 16585 | 0 | |
| placenta | 21 / 280825 | 74 | |
| prostate | 20 / 189345 | 105 | |
| salivary gland | 0 / 20155 | 0 | |
| skin | 2 / 210574 | 9 | |
| spleen | 1 / 53952 | 18 | |
| stomach | 2 / 96619 | 20 | |
| testis | 3 / 330442 | 9 | |
| thymus | 0 / 81131 | 0 | |
| thyroid | 30 / 47473 | 631 | |
| tonsil | 1 / 16999 | 58 | |
| trachea | 0 / 52413 | 0 | |
| umbilical cord | 0 / 13680 | 0 | |
| uterus | 10 / 232878 | 42 | |
| vascular | 0 / 51780 | 0 |
Microarray in - Probe name: CUST_1749_PI416261804
- Donor H0351.2001
- Sex: Male Age: 24 years Race/Ethnicity: African American Handedness: Left
- Tissue Receipt Date: 7/29/2009 Serology: Pass Tissue pH :6.72 Additional Medical Information :History of asthma
- Postmortem Interval: 23 hours (estimated time of death to time that tissue is frozen)
- Toxicology: Positive for atropine and caffeine, at levels usually not toxicologically significant
| Tissue | Expression(mean ± stddev) | Expression Bar |
|---|---|---|
| Amygdala | 4.45 ± 0.52 | ![](../"images/bar_3.png"){kind=small}   |
| Basal Forebrain | 4.8 ± 0.36 | |
| Basal Part of Pons | 4.96 ± 0.57 | |
| Cerebellar Cortex | 4.31 ± 0.39 | |
| Cerebellar Nuclei | 5.35 ± 0.42 | |
| Claustrum | 4.48 ± 0.6 | |
| Epithalamus | 3.73 ± 0.99 | |
| Frontal Lobe | 4.69 ± 0.59 | |
| Globus Pallidus | 6.06 ± 0.21 | |
| Hypothalamus | 4.21 ± 0.56 | |
| Insula | 4.54 ± 0.96 | |
| Limbic Lobe | 4.49 ± 0.59 | |
| Mesencephalon | 4.74 ± 0.64 | |
| Myelencephalon | 4.72 ± 0.61 | |
| Occipital Lobe | 4.61 ± 0.51 | |
| Parietal Lobe | 4.59 ± 0.51 | |
| Pontine Tegmentum | 4.61 ± 0.53 | |
| Striatum | 5.12 ± 0.57 | |
| Subthalamus | 4.74 ± 0.34 | |
| Temporal Lobe | 4.46 ± 0.46 | |
| Thalamus | 5.02 ± 0.39 | |
| White Matter | 6.63 ± 0.46 | |
Mouse Brain ISH 
| Gene Symbol | Brain Structure ID | Brain Structure Name | Express Desity/Level (Meatured by ISH) | Express Bar |
|---|---|---|---|---|
| Snx22 | CB | Cerebellum | 3.86 | |
| 4.26 | | |||
| Snx22 | CTX | Cerebral cortex | 0.8 | |
| 0.86 | | |||
| Snx22 | HIP | Hippocampal region | 0.63 | |
| 0.49 | | |||
| Snx22 | HPF | Hippocampal formation | 0.57 | |
| 0.5 | | |||
| Snx22 | HY | Hypothalamus | 0.86 | |
| 0.56 | | |||
| Snx22 | LSX | Lateral septal complex | 0.69 | |
| 0.61 | | |||
| Snx22 | MB | Midbrain | 1.31 | |
| 1.04 | | |||
| Snx22 | MY | Medulla | 2.32 | |
| 1.96 | | |||
| Snx22 | OLF | Olfactory bulb | 1.04 | |
| 1.05 | | |||
| Snx22 | P | Pons | 1.3 | |
| 0.94 | | |||
| Snx22 | PAL | Pallidum | 0.79 | |
| 0.5 | | |||
| Snx22 | RHP | Retrohippocampal region | 0.44 | |
| 0.58 | | |||
| Snx22 | sAMY | Striatum-like amygdalar nuclei | 0.27 | |
| 0.12 | | |||
| Snx22 | STR | Striatum | 0.28 | |
| 0.23 | | |||
| Snx22 | STRd | Striatum dorsal region | 0.23 | |
| 0.16 | | |||
| Snx22 | STRv | Striatum ventral region | 0.24 | |
| 0.27 | | |||
| Snx22 | TH | Thalamus | 1.8 | |
| 1.11 | |