AutismKB 2.0

Annotation Detail for ZC3H14


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Basic Information Top
Gene Symbol:ZC3H14 ( FLJ11806,MGC26892,NY-REN-37,SUT2,UKp68 )
Gene Full Name: zinc finger CCCH-type containing 14
Band: 14q31.3
Quick LinksEntrez ID:79882; OMIM: 613279; Uniprot ID:ZC3HE_HUMAN; ENSEMBL ID: ENSG00000100722; HGNC ID: 20509
Relate to Another Database: SFARIGene; denovo-db
Unigene EST Top
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
embryoid body5 / 7076170
blastocyst5 / 6231980
fetus63 / 564012111
neonate0 / 310970 
infant0 / 236200 
juvenile4 / 5555671
adult98 / 193912150
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
adrenal tumor1 / 1279478
bladder carcinoma2 / 17475114
breast (mammary gland) tumor2 / 9417821
cervical tumor1 / 3436629
chondrosarcoma7 / 8282384
colorectal tumor4 / 11424635
esophageal tumor0 / 172900 
gastrointestinal tumor10 / 11936983
germ cell tumor21 / 26384579
glioma3 / 10688328
head and neck tumor10 / 13630273
kidney tumor3 / 6895943
leukemia3 / 9584231
liver tumor1 / 9635910
lung tumor1 / 1031279
lymphoma1 / 7175513
non-neoplasia7 / 9725071
normal251 / 336030774
ovarian tumor7 / 7668291
pancreatic tumor1 / 1046169
primitive neuroectodermal tumor of the CNS7 / 12568055
prostate cancer7 / 10268068
retinoblastoma4 / 4635686
skin tumor12 / 12494996
soft tissue/muscle tissue tumor7 / 12519155
uterine tumor2 / 9025722
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
adipose tissue0 / 131060 
adrenal gland2 / 3319760
ascites0 / 400150 
bladder5 / 29757168
blood3 / 12347824
bone4 / 7165555
bone marrow2 / 4880140
brain68 / 110098961
cervix7 / 48171145
connective tissue5 / 14925533
ear2 / 16212123
embryonic tissue20 / 21572292
esophagus0 / 202090 
eye12 / 21105456
heart4 / 8962644
intestine8 / 23447234
kidney8 / 21177737
larynx0 / 241450 
liver4 / 20774319
lung32 / 33697494
lymph1 / 4427022
lymph node2 / 9161021
mammary gland4 / 15327126
mouth6 / 6705289
muscle6 / 10771555
nerve0 / 157680 
ovary7 / 10205168
pancreas5 / 21481223
parathyroid1 / 2053948
pharynx1 / 4132824
pituitary gland1 / 1658560
placenta24 / 28082585
prostate13 / 18934568
salivary gland0 / 201550 
skin22 / 210574104
spleen1 / 5395218
stomach15 / 96619155
testis115 / 330442348
thymus2 / 8113124
thyroid4 / 4747384
tonsil0 / 169990 
trachea6 / 52413114
umbilical cord0 / 136800 
uterus8 / 23287834
vascular2 / 5178038
Microarray in BioGPS Top
Select probe  
  • Microarray Platform: GeneAtlas U133A, gcrma
  • Affymatrix Probe ID: 204216_s_at
Cell line Expression level Expression bar
721_B_lymphoblasts57.95
Adipocyte24.05
AdrenalCortex27.25
Adrenalgland19.45
Amygdala21.7
Appendix25.7
AtrioventricularNode19.2
BDCA4+_DentriticCells44.6
Bonemarrow24.95
BronchialEpithelialCells26.65
CD105+_Endothelial36.15
CD14+_Monocytes26.05
CD19+_BCells(neg._sel.)27.9
CD33+_Myeloid30.75
CD34+34.4
CD4+_Tcells56.5
CD56+_NKCells33.3
CD71+_EarlyErythroid24.5
CD8+_Tcells47.2
CardiacMyocytes29.95
Caudatenucleus19.65
Cerebellum19.85
CerebellumPeduncles27.25
CiliaryGanglion18.1
CingulateCortex24.55
Colorectaladenocarcinoma24.65
DorsalRootGanglion23.85
FetalThyroid24.1
Fetalbrain25.4
Fetalliver28.45
Fetallung20.9
GlobusPallidus17.95
Heart31.9
Hypothalamus24.25
Kidney20.35
Leukemia_chronicMyelogenousK-56228.8
Leukemia_promyelocytic-HL-6023.1
Leukemialymphoblastic(MOLT-4)26.1
Liver32.55
Lung19.45
Lymphnode25.45
Lymphoma_burkitts(Daudi)32.15
Lymphoma_burkitts(Raji)33.85
MedullaOblongata21.8
OccipitalLobe22.3
OlfactoryBulb23.7
Ovary19.45
Pancreas20.4
PancreaticIslet30.7
ParietalLobe26.3
Pituitary38.55
Placenta21.85
Pons21.75
PrefrontalCortex28
Prostate24.1
Salivarygland30.4
SkeletalMuscle30.35
Skin23
SmoothMuscle29.2
Spinalcord20.75
SubthalamicNucleus22.55
SuperiorCervicalGanglion32.8
TemporalLobe20.6
Testis99.6
TestisGermCell358.4
TestisIntersitial791.35
TestisLeydigCell263.55
TestisSeminiferousTubule215.3
Thalamus19.35
Thymus17.5
Thyroid29.7
Tongue24.05
Tonsil24.05
Trachea23.8
TrigeminalGanglion26.95
Uterus19.6
UterusCorpus21.6
WholeBlood23.95
Wholebrain17.8
colon25.05
pineal_day31.14
pineal_night31.64
retina26.075
small_intestine23.65
Allen Brain Atlas Top
Human Whole Brain Microarrayview in Allen Brain Atlas
  • Probe id     Donor id      
  • Probe name: A_23_P54230
  • Donor H0351.2001
  • Sex: Male     Age: 24 years     Race/Ethnicity: African American     Handedness: Left
  • Tissue Receipt Date: 7/29/2009     Serology: Pass      Tissue pH :6.72     Additional Medical Information :History of asthma
  • Postmortem Interval: 23 hours (estimated time of death to time that tissue is frozen)
  • Toxicology: Positive for atropine and caffeine, at levels usually not toxicologically significant
Tissue Expression(mean ± stddev) Expression Bar
Amygdala9.27 ± 0.22
Basal Forebrain9 ± 0.14
Basal Part of Pons8.83 ± 0.22
Cerebellar Cortex9.04 ± 0.31
Cerebellar Nuclei8.89 ± 0.17
Claustrum9.1 ± 0.3
Epithalamus8.97 ± 0.17
Frontal Lobe8.81 ± 0.27
Globus Pallidus9.06 ± 0.11
Hypothalamus8.89 ± 0.27
Insula8.82 ± 0.25
Limbic Lobe9.07 ± 0.34
Mesencephalon8.93 ± 0.25
Myelencephalon8.93 ± 0.25
Occipital Lobe9.17 ± 0.29
Parietal Lobe9.01 ± 0.28
Pontine Tegmentum8.99 ± 0.34
Striatum9.07 ± 0.33
Subthalamus8.78 ± 0.18
Temporal Lobe8.9 ± 0.28
Thalamus8.78 ± 0.2
White Matter9.62 ± 0.36
Mouse Brain ISH
Gene Symbol Brain Structure ID Brain Structure Name Express Desity/Level (Meatured by ISH) Express Bar
Zc3h14CBCerebellum1.29
1.4
Zc3h14CTXCerebral cortex2.49
0.84
Zc3h14HIPHippocampal region1.46
0.87
Zc3h14HPFHippocampal formation2.26
1.31
Zc3h14HYHypothalamus0.08
0.05
Zc3h14LSXLateral septal complex0.07
0.16
Zc3h14MBMidbrain0.28
0.19
Zc3h14MYMedulla1.2
0.8
Zc3h14OLFOlfactory bulb1.4
0.67
Zc3h14PPons0.34
0.3
Zc3h14PALPallidum0.7
0.81
Zc3h14RHPRetrohippocampal region3.41
1.76
Zc3h14sAMYStriatum-like amygdalar nuclei0.18
0.08
Zc3h14STRStriatum0.36
0.19
Zc3h14STRdStriatum dorsal region0.52
0.24
Zc3h14STRvStriatum ventral region0.07
0.12
Zc3h14THThalamus0.41
0.33
Peptide Top
Peptide Name Peptide Lengh Peptide Start Peptide End Peptide Sequence Source
PAp00006674 24 660 683 RIPVLSPKPAVAPPAPPSSSQLCR Peptide Atlas

Simple Query:


  (e.g. CHD8)

Syndromic Genes

Non-syndromic Genes

AutismKB Statistics

  • Studies: 1,036
  • Genes: 1,379
  • CNVs/SVs: 5,420
  • SNVs/Indels: 11,669
  • de novo Mutations: 5,669
  • Mosaics: 789
  • Linkage Regions: 172
  • Paper Collected: 6/30/2018
  • Last Update: 8/26/2018


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