AutismKB 2.0

Annotation Detail for PODNL1


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Basic Information Top
Gene Symbol:PODNL1 ( FLJ23447,SLRR5B )
Gene Full Name: podocan-like 1
Band: 19p13.12
Quick LinksEntrez ID:79883; OMIM: NA; Uniprot ID:PONL1_HUMAN; ENSEMBL ID: ENSG00000132000; HGNC ID: 26275
Relate to Another Database: SFARIGene; denovo-db
Unigene EST Top
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
embryoid body0 / 707610 
blastocyst0 / 623190 
fetus2 / 5640123
neonate0 / 310970 
infant0 / 236200 
juvenile0 / 555560 
adult15 / 19391217
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
adrenal tumor0 / 127940 
bladder carcinoma0 / 174750 
breast (mammary gland) tumor0 / 941780 
cervical tumor0 / 343660 
chondrosarcoma3 / 8282336
colorectal tumor1 / 1142468
esophageal tumor0 / 172900 
gastrointestinal tumor0 / 1193690 
germ cell tumor1 / 2638453
glioma3 / 10688328
head and neck tumor3 / 13630222
kidney tumor0 / 689590 
leukemia0 / 958420 
liver tumor0 / 963590 
lung tumor0 / 1031270 
lymphoma0 / 717550 
non-neoplasia3 / 9725030
normal10 / 33603072
ovarian tumor0 / 766820 
pancreatic tumor4 / 10461638
primitive neuroectodermal tumor of the CNS2 / 12568015
prostate cancer0 / 1026800 
retinoblastoma0 / 463560 
skin tumor1 / 1249498
soft tissue/muscle tissue tumor0 / 1251910 
uterine tumor1 / 9025711
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
adipose tissue0 / 131060 
adrenal gland0 / 331970 
ascites0 / 400150 
bladder0 / 297570 
blood0 / 1234780 
bone2 / 7165527
bone marrow0 / 488010 
brain6 / 11009895
cervix0 / 481710 
connective tissue6 / 14925540
ear0 / 162120 
embryonic tissue1 / 2157224
esophagus0 / 202090 
eye1 / 2110544
heart0 / 896260 
intestine3 / 23447212
kidney1 / 2117774
larynx0 / 241450 
liver0 / 2077430 
lung4 / 33697411
lymph0 / 442700 
lymph node0 / 916100 
mammary gland3 / 15327119
mouth0 / 670520 
muscle0 / 1077150 
nerve0 / 157680 
ovary1 / 1020519
pancreas4 / 21481218
parathyroid0 / 205390 
pharynx0 / 413280 
pituitary gland0 / 165850 
placenta2 / 2808257
prostate1 / 1893455
salivary gland3 / 20155148
skin1 / 2105744
spleen0 / 539520 
stomach0 / 966190 
testis1 / 3304423
thymus0 / 811310 
thyroid0 / 474730 
tonsil0 / 169990 
trachea0 / 524130 
umbilical cord0 / 136800 
uterus1 / 2328784
vascular0 / 517800 
Microarray in BioGPS Top
Select probe  
  • Microarray Platform: GeneAtlas U133A, gcrma
  • Affymatrix Probe ID: 220411_x_at
Cell line Expression level Expression bar
721_B_lymphoblasts34.25
Adipocyte19.8
AdrenalCortex49.7
Adrenalgland24.35
Amygdala31.5
Appendix30.05
AtrioventricularNode28.4
BDCA4+_DentriticCells30.5
Bonemarrow29.3
BronchialEpithelialCells24.3
CD105+_Endothelial29.85
CD14+_Monocytes23.75
CD19+_BCells(neg._sel.)23.9
CD33+_Myeloid40.55
CD34+37.55
CD4+_Tcells33.75
CD56+_NKCells32.2
CD71+_EarlyErythroid27.4
CD8+_Tcells36.4
CardiacMyocytes37.15
Caudatenucleus25.75
Cerebellum23.85
CerebellumPeduncles33.25
CiliaryGanglion20.4
CingulateCortex42.05
Colorectaladenocarcinoma29.05
DorsalRootGanglion22.25
FetalThyroid28.6
Fetalbrain29.8
Fetalliver24.45
Fetallung24.7
GlobusPallidus22
Heart36.9
Hypothalamus31.45
Kidney23.25
Leukemia_chronicMyelogenousK-56226.25
Leukemia_promyelocytic-HL-6021.3
Leukemialymphoblastic(MOLT-4)22.85
Liver37.45
Lung32.7
Lymphnode26.35
Lymphoma_burkitts(Daudi)37.25
Lymphoma_burkitts(Raji)44.35
MedullaOblongata26.55
OccipitalLobe28.6
OlfactoryBulb25.05
Ovary19.3
Pancreas23.65
PancreaticIslet24.9
ParietalLobe36.1
Pituitary33.9
Placenta29.35
Pons29.6
PrefrontalCortex36.1
Prostate71.85
Salivarygland23.35
SkeletalMuscle32.35
Skin26.55
SmoothMuscle17.75
Spinalcord16.75
SubthalamicNucleus26.35
SuperiorCervicalGanglion38
TemporalLobe26.75
Testis25
TestisGermCell27.55
TestisIntersitial29.25
TestisLeydigCell28.9
TestisSeminiferousTubule25.35
Thalamus27.9
Thymus23.55
Thyroid36.9
Tongue32.15
Tonsil38.2
Trachea24.45
TrigeminalGanglion42.8
Uterus57.55
UterusCorpus26.65
WholeBlood31.85
Wholebrain24.8
colon32
pineal_day52.88
pineal_night41.44
retina36.025
small_intestine32.2
Allen Brain Atlas Top
Human Whole Brain Microarrayview in Allen Brain Atlas
  • Probe id     Donor id      
  • Probe name: A_23_P208567
  • Donor H0351.2001
  • Sex: Male     Age: 24 years     Race/Ethnicity: African American     Handedness: Left
  • Tissue Receipt Date: 7/29/2009     Serology: Pass      Tissue pH :6.72     Additional Medical Information :History of asthma
  • Postmortem Interval: 23 hours (estimated time of death to time that tissue is frozen)
  • Toxicology: Positive for atropine and caffeine, at levels usually not toxicologically significant
Tissue Expression(mean ± stddev) Expression Bar
Amygdala3.07 ± 0.96
Basal Forebrain2.33 ± 0.3
Basal Part of Pons2.13 ± 0.64
Cerebellar Cortex3.79 ± 0.67
Cerebellar Nuclei3.07 ± 0.91
Claustrum3.77 ± 1.14
Epithalamus4.2 ± 1.07
Frontal Lobe2.71 ± 0.95
Globus Pallidus3.44 ± 1
Hypothalamus3.87 ± 0.65
Insula2.61 ± 0.72
Limbic Lobe2.85 ± 0.85
Mesencephalon3.13 ± 0.68
Myelencephalon3.19 ± 0.95
Occipital Lobe3.11 ± 1.05
Parietal Lobe2.96 ± 0.95
Pontine Tegmentum3.05 ± 0.85
Striatum2.82 ± 0.92
Subthalamus2.44 ± 0.56
Temporal Lobe2.96 ± 0.9
Thalamus2.88 ± 0.88
White Matter2.86 ± 0.67
Mouse Brain ISH
Gene Symbol Brain Structure ID Brain Structure Name Express Desity/Level (Meatured by ISH) Express Bar
Podnl1CBCerebellum2.09
4.16
Podnl1CTXCerebral cortex1.35
1.58
Podnl1HIPHippocampal region0.96
1.77
Podnl1HPFHippocampal formation0.94
1.47
Podnl1HYHypothalamus0.75
0.77
Podnl1LSXLateral septal complex16.06
21.21
Podnl1MBMidbrain0.97
1.42
Podnl1MYMedulla1.29
1.62
Podnl1OLFOlfactory bulb1.59
1.57
Podnl1PPons1.02
1.24
Podnl1PALPallidum0.85
0.92
Podnl1RHPRetrohippocampal region0.9
1.02
Podnl1sAMYStriatum-like amygdalar nuclei0.81
0.86
Podnl1STRStriatum1.98
2.32
Podnl1STRdStriatum dorsal region0.93
0.99
Podnl1STRvStriatum ventral region1.02
1.02
Podnl1THThalamus1.02
2.8
Peptide Top

Simple Query:


  (e.g. CHD8)

Syndromic Genes

Non-syndromic Genes

AutismKB Statistics

  • Studies: 1,036
  • Genes: 1,379
  • CNVs/SVs: 5,420
  • SNVs/Indels: 11,669
  • de novo Mutations: 5,669
  • Mosaics: 789
  • Linkage Regions: 172
  • Paper Collected: 6/30/2018
  • Last Update: 8/26/2018


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