Annotation Detail for SPEF2
Basic Information Top
| Gene Symbol: | SPEF2 ( CT122,FLJ23164,FLJ23577,FLJ25395,KIAA1770,KPL2,MGC102842 ) |
|---|---|
| Gene Full Name: | sperm flagellar 2 |
| Band: | 5p13.2 |
| Quick Links | Entrez ID:79925; OMIM: 610172; Uniprot ID:SPEF2_HUMAN; ENSEMBL ID: ENSG00000152582; HGNC ID: 26293 |
| Relate to Another Database: | SFARIGene; denovo-db |
- Unigene ID: Hs.298863
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
 | |||
| embryoid body | 0 / 70761 | 0 | |
| blastocyst | 0 / 62319 | 0 | |
| fetus | 7 / 564012 | 12 |  |
| neonate | 0 / 31097 | 0 | |
| infant | 0 / 23620 | 0 | |
| juvenile | 0 / 55556 | 0 | |
| adult | 30 / 1939121 | 15 | |
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
| |||
| adrenal tumor | 0 / 12794 | 0 | |
| bladder carcinoma | 0 / 17475 | 0 | |
| breast (mammary gland) tumor | 3 / 94178 | 31 | |
| cervical tumor | 0 / 34366 | 0 | |
| chondrosarcoma | 2 / 82823 | 24 | |
| colorectal tumor | 0 / 114246 | 0 | |
| esophageal tumor | 0 / 17290 | 0 | |
| gastrointestinal tumor | 0 / 119369 | 0 | |
| germ cell tumor | 0 / 263845 | 0 | |
| glioma | 0 / 106883 | 0 | |
| head and neck tumor | 0 / 136302 | 0 | |
| kidney tumor | 1 / 68959 | 14 | |
| leukemia | 1 / 95842 | 10 |  |
| liver tumor | 0 / 96359 | 0 | |
| lung tumor | 0 / 103127 | 0 | |
| lymphoma | 0 / 71755 | 0 | |
| non-neoplasia | 2 / 97250 | 20 | |
| normal | 59 / 3360307 | 17 | |
| ovarian tumor | 0 / 76682 | 0 | |
| pancreatic tumor | 0 / 104616 | 0 | |
| primitive neuroectodermal tumor of the CNS | 0 / 125680 | 0 | |
| prostate cancer | 1 / 102680 | 9 | |
| retinoblastoma | 0 / 46356 | 0 | |
| skin tumor | 0 / 124949 | 0 | |
| soft tissue/muscle tissue tumor | 0 / 125191 | 0 | |
| uterine tumor | 7 / 90257 | 77 |  |
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
| |||
| adipose tissue | 0 / 13106 | 0 | |
| adrenal gland | 0 / 33197 | 0 | |
| ascites | 0 / 40015 | 0 | |
| bladder | 1 / 29757 | 33 | |
| blood | 1 / 123478 | 8 | |
| bone | 2 / 71655 | 27 | |
| bone marrow | 0 / 48801 | 0 | |
| brain | 24 / 1100989 | 21 | |
| cervix | 0 / 48171 | 0 | |
| connective tissue | 0 / 149255 | 0 | |
| ear | 0 / 16212 | 0 | |
| embryonic tissue | 4 / 215722 | 18 | |
| esophagus | 0 / 20209 | 0 | |
| eye | 5 / 211054 | 23 | |
| heart | 0 / 89626 | 0 | |
| intestine | 1 / 234472 | 4 | |
| kidney | 5 / 211777 | 23 | |
| larynx | 0 / 24145 | 0 | |
| liver | 0 / 207743 | 0 | |
| lung | 7 / 336974 | 20 | |
| lymph | 0 / 44270 | 0 | |
| lymph node | 0 / 91610 | 0 | |
| mammary gland | 3 / 153271 | 19 | |
| mouth | 0 / 67052 | 0 | |
| muscle | 2 / 107715 | 18 | |
| nerve | 0 / 15768 | 0 | |
| ovary | 1 / 102051 | 9 | |
| pancreas | 0 / 214812 | 0 | |
| parathyroid | 0 / 20539 | 0 | |
| pharynx | 0 / 41328 | 0 | |
| pituitary gland | 0 / 16585 | 0 | |
| placenta | 4 / 280825 | 14 | |
| prostate | 1 / 189345 | 5 | |
| salivary gland | 0 / 20155 | 0 | |
| skin | 0 / 210574 | 0 | |
| spleen | 1 / 53952 | 18 | |
| stomach | 0 / 96619 | 0 | |
| testis | 5 / 330442 | 15 | |
| thymus | 1 / 81131 | 12 | |
| thyroid | 1 / 47473 | 21 | |
| tonsil | 0 / 16999 | 0 | |
| trachea | 1 / 52413 | 19 | |
| umbilical cord | 0 / 13680 | 0 | |
| uterus | 8 / 232878 | 34 | |
| vascular | 0 / 51780 | 0 |
Microarray in - Probe name: A_23_P252388
- Donor H0351.2001
- Sex: Male Age: 24 years Race/Ethnicity: African American Handedness: Left
- Tissue Receipt Date: 7/29/2009 Serology: Pass Tissue pH :6.72 Additional Medical Information :History of asthma
- Postmortem Interval: 23 hours (estimated time of death to time that tissue is frozen)
- Toxicology: Positive for atropine and caffeine, at levels usually not toxicologically significant
| Tissue | Expression(mean ± stddev) | Expression Bar |
|---|---|---|
| Amygdala | 6.23 ± 1.22 | ![](../"images/bar_3.png"){kind=small}   |
| Basal Forebrain | 6.02 ± 0.86 | |
| Basal Part of Pons | 7.03 ± 0.63 | |
| Cerebellar Cortex | 6.78 ± 0.6 | |
| Cerebellar Nuclei | 6.28 ± 1.39 | |
| Claustrum | 6.61 ± 0.67 | |
| Epithalamus | 6.48 ± 1.34 | |
| Frontal Lobe | 5.76 ± 1.22 | |
| Globus Pallidus | 7.55 ± 1.28 | |
| Hypothalamus | 5.05 ± 1.93 | |
| Insula | 5.06 ± 1.32 | |
| Limbic Lobe | 5.53 ± 1.03 | |
| Mesencephalon | 6.19 ± 1.28 | |
| Myelencephalon | 5.96 ± 1.31 | |
| Occipital Lobe | 6.6 ± 1.43 | |
| Parietal Lobe | 6.09 ± 1.31 | |
| Pontine Tegmentum | 5.87 ± 1.11 | |
| Striatum | 6.2 ± 1.53 | |
| Subthalamus | 6.61 ± 0.44 | |
| Temporal Lobe | 5.58 ± 1.31 | |
| Thalamus | 6.21 ± 0.86 | |
| White Matter | 6.24 ± 1.38 | |
Mouse Brain ISH 
| Gene Symbol | Brain Structure ID | Brain Structure Name | Express Desity/Level (Meatured by ISH) | Express Bar |
|---|---|---|---|---|
| C230086A09Rik | CB | Cerebellum | 0.23 | |
| 0.37 | | |||
| C230086A09Rik | CTX | Cerebral cortex | 0.38 | |
| 0.38 | | |||
| C230086A09Rik | HIP | Hippocampal region | 0.25 | |
| 0.37 | | |||
| C230086A09Rik | HPF | Hippocampal formation | 0.35 | |
| 0.39 | | |||
| C230086A09Rik | HY | Hypothalamus | 0.06 | |
| 0.29 | | |||
| C230086A09Rik | LSX | Lateral septal complex | 0.06 | |
| 0.03 | | |||
| C230086A09Rik | MB | Midbrain | 0.15 | |
| 0.34 | | |||
| C230086A09Rik | MY | Medulla | 0.16 | |
| 0.27 | | |||
| C230086A09Rik | OLF | Olfactory bulb | 0.39 | |
| 0.41 | | |||
| C230086A09Rik | P | Pons | 0.08 | |
| 0.08 | | |||
| C230086A09Rik | PAL | Pallidum | 0.06 | |
| 0.04 | | |||
| C230086A09Rik | RHP | Retrohippocampal region | 0.51 | |
| 0.44 | | |||
| C230086A09Rik | sAMY | Striatum-like amygdalar nuclei | 0.07 | |
| 0.2 | | |||
| C230086A09Rik | STR | Striatum | 0.05 | |
| 0.07 | | |||
| C230086A09Rik | STRd | Striatum dorsal region | 0.02 | |
| 0.02 | | |||
| C230086A09Rik | STRv | Striatum ventral region | 0.13 | |
| 0.13 | | |||
| C230086A09Rik | TH | Thalamus | 0.09 | |
| 0.13 | |
| Peptide Name | Peptide Lengh | Peptide Start | Peptide End | Peptide Sequence | Source |
|---|---|---|---|---|---|
| PAp00005590 | 12 | 795 | 806 | MNDIIAEELSYK | Peptide Atlas |