AutismKB 2.0

Annotation Detail for MAP6D1


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Basic Information Top
Gene Symbol:MAP6D1 ( FLJ12748,MAPO6D1,SL21 )
Gene Full Name: MAP6 domain containing 1
Band: 3q27.1
Quick LinksEntrez ID:79929; OMIM: 610593; Uniprot ID:MA6D1_HUMAN; ENSEMBL ID: ENSG00000180834; HGNC ID: 25753
Relate to Another Database: SFARIGene; denovo-db
Unigene EST Top
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
embryoid body0 / 707610 
blastocyst0 / 623190 
fetus11 / 56401219
neonate0 / 310970 
infant0 / 236200 
juvenile0 / 555560 
adult17 / 19391218
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
adrenal tumor0 / 127940 
bladder carcinoma0 / 174750 
breast (mammary gland) tumor0 / 941780 
cervical tumor0 / 343660 
chondrosarcoma0 / 828230 
colorectal tumor0 / 1142460 
esophageal tumor0 / 172900 
gastrointestinal tumor1 / 1193698
germ cell tumor3 / 26384511
glioma13 / 106883121
head and neck tumor0 / 1363020 
kidney tumor3 / 6895943
leukemia1 / 9584210
liver tumor0 / 963590 
lung tumor1 / 1031279
lymphoma0 / 717550 
non-neoplasia4 / 9725041
normal80 / 336030723
ovarian tumor0 / 766820 
pancreatic tumor0 / 1046160 
primitive neuroectodermal tumor of the CNS0 / 1256800 
prostate cancer0 / 1026800 
retinoblastoma0 / 463560 
skin tumor0 / 1249490 
soft tissue/muscle tissue tumor0 / 1251910 
uterine tumor0 / 902570 
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
adipose tissue0 / 131060 
adrenal gland0 / 331970 
ascites1 / 4001524
bladder0 / 297570 
blood0 / 1234780 
bone0 / 716550 
bone marrow0 / 488010 
brain89 / 110098980
cervix0 / 481710 
connective tissue0 / 1492550 
ear0 / 162120 
embryonic tissue2 / 2157229
esophagus0 / 202090 
eye2 / 2110549
heart2 / 8962622
intestine0 / 2344720 
kidney4 / 21177718
larynx0 / 241450 
liver0 / 2077430 
lung2 / 3369745
lymph0 / 442700 
lymph node2 / 9161021
mammary gland0 / 1532710 
mouth0 / 670520 
muscle0 / 1077150 
nerve0 / 157680 
ovary0 / 1020510 
pancreas0 / 2148120 
parathyroid1 / 2053948
pharynx0 / 413280 
pituitary gland0 / 165850 
placenta2 / 2808257
prostate0 / 1893450 
salivary gland0 / 201550 
skin3 / 21057414
spleen0 / 539520 
stomach0 / 966190 
testis2 / 3304426
thymus1 / 8113112
thyroid0 / 474730 
tonsil0 / 169990 
trachea0 / 524130 
umbilical cord0 / 136800 
uterus0 / 2328780 
vascular0 / 517800 
Microarray in BioGPS Top
Select probe  
  • Microarray Platform: GeneAtlas U133A, gcrma
  • Affymatrix Probe ID: 221713_s_at
Cell line Expression level Expression bar
721_B_lymphoblasts7.9
Adipocyte7.8
AdrenalCortex13.6
Adrenalgland7.1
Amygdala41.85
Appendix7.75
AtrioventricularNode13.6
BDCA4+_DentriticCells6.6
Bonemarrow7.85
BronchialEpithelialCells5.95
CD105+_Endothelial6.35
CD14+_Monocytes7.55
CD19+_BCells(neg._sel.)7.3
CD33+_Myeloid8.25
CD34+8
CD4+_Tcells8.7
CD56+_NKCells6.95
CD71+_EarlyErythroid8.7
CD8+_Tcells6.1
CardiacMyocytes9.6
Caudatenucleus42.15
Cerebellum122.55
CerebellumPeduncles110.75
CiliaryGanglion6.9
CingulateCortex63.4
Colorectaladenocarcinoma6.9
DorsalRootGanglion7.15
FetalThyroid5.7
Fetalbrain8.25
Fetalliver6.45
Fetallung5.2
GlobusPallidus26.65
Heart8.75
Hypothalamus40.05
Kidney6.45
Leukemia_chronicMyelogenousK-5626.4
Leukemia_promyelocytic-HL-606.7
Leukemialymphoblastic(MOLT-4)7.15
Liver9.4
Lung6.25
Lymphnode6.45
Lymphoma_burkitts(Daudi)10.35
Lymphoma_burkitts(Raji)6.9
MedullaOblongata61
OccipitalLobe43.8
OlfactoryBulb8.65
Ovary8.9
Pancreas5.7
PancreaticIslet8.25
ParietalLobe60.75
Pituitary12.25
Placenta7.9
Pons34.1
PrefrontalCortex61
Prostate7.45
Salivarygland9.05
SkeletalMuscle12.5
Skin6.8
SmoothMuscle8.45
Spinalcord73.95
SubthalamicNucleus59.65
SuperiorCervicalGanglion7.2
TemporalLobe32.1
Testis6.35
TestisGermCell5.7
TestisIntersitial6.1
TestisLeydigCell9.65
TestisSeminiferousTubule12.55
Thalamus87.95
Thymus7.55
Thyroid8.7
Tongue9.2
Tonsil7.7
Trachea6.75
TrigeminalGanglion8.5
Uterus5.1
UterusCorpus6.65
WholeBlood7.8
Wholebrain61.45
colon7.35
pineal_day8.68
pineal_night8.54
retina40.175
small_intestine6.25
Allen Brain Atlas Top
Human Whole Brain Microarrayview in Allen Brain Atlas
  • Probe id     Donor id      
  • Probe name: A_24_P388593
  • Donor H0351.2001
  • Sex: Male     Age: 24 years     Race/Ethnicity: African American     Handedness: Left
  • Tissue Receipt Date: 7/29/2009     Serology: Pass      Tissue pH :6.72     Additional Medical Information :History of asthma
  • Postmortem Interval: 23 hours (estimated time of death to time that tissue is frozen)
  • Toxicology: Positive for atropine and caffeine, at levels usually not toxicologically significant
Tissue Expression(mean ± stddev) Expression Bar
Amygdala4.74 ± 0.9
Basal Forebrain4.57 ± 0.6
Basal Part of Pons4.34 ± 0.36
Cerebellar Cortex4.7 ± 0.47
Cerebellar Nuclei5.5 ± 0.86
Claustrum4.7 ± 0.93
Epithalamus3.94 ± 0.25
Frontal Lobe4.59 ± 0.62
Globus Pallidus5.09 ± 0.76
Hypothalamus4.07 ± 0.45
Insula4.28 ± 0.6
Limbic Lobe4.52 ± 0.69
Mesencephalon4.82 ± 0.7
Myelencephalon4.67 ± 0.67
Occipital Lobe4.63 ± 0.75
Parietal Lobe4.57 ± 0.67
Pontine Tegmentum4.59 ± 0.62
Striatum4.97 ± 0.73
Subthalamus4.17 ± 0.57
Temporal Lobe4.49 ± 0.72
Thalamus4.84 ± 0.5
White Matter5.65 ± 0.27
Mouse Brain ISH
Gene Symbol Brain Structure ID Brain Structure Name Express Desity/Level (Meatured by ISH) Express Bar
Map6d1CBCerebellum65.9
91.42
Map6d1CTXCerebral cortex100
100
Map6d1HIPHippocampal region100
100
Map6d1HPFHippocampal formation100
100
Map6d1HYHypothalamus100
100
Map6d1LSXLateral septal complex100
100
Map6d1MBMidbrain100
100
Map6d1MYMedulla100
100
Map6d1OLFOlfactory bulb100
100
Map6d1PPons100
100
Map6d1PALPallidum100
100
Map6d1RHPRetrohippocampal region100
100
Map6d1sAMYStriatum-like amygdalar nuclei100
100
Map6d1STRStriatum100
100
Map6d1STRdStriatum dorsal region100
100
Map6d1STRvStriatum ventral region100
100
Map6d1THThalamus100
100
Peptide Top

Simple Query:


  (e.g. CHD8)

Syndromic Genes

Non-syndromic Genes

AutismKB Statistics

  • Studies: 1,036
  • Genes: 1,379
  • CNVs/SVs: 5,420
  • SNVs/Indels: 11,669
  • de novo Mutations: 5,669
  • Mosaics: 789
  • Linkage Regions: 172
  • Paper Collected: 6/30/2018
  • Last Update: 8/26/2018


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