Annotation Detail for CNTNAP3
Basic Information Top
| Gene Symbol: | CNTNAP3 ( CASPR3,CNTNAP3A,RP11-138L21.1,RP11-290L7.1 ) |
|---|---|
| Gene Full Name: | contactin associated protein-like 3 |
| Band: | 9p12 |
| Quick Links | Entrez ID:79937; OMIM: 610517; Uniprot ID:CNTP3_HUMAN; ENSEMBL ID: ENSG00000106714; HGNC ID: 13834 |
| Relate to Another Database: | SFARIGene; denovo-db |
- Unigene ID: Hs.658328
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
 | |||
| embryoid body | 0 / 70761 | 0 | |
| blastocyst | 1 / 62319 | 16 |  |
| fetus | 2 / 564012 | 3 |  |
| neonate | 0 / 31097 | 0 | |
| infant | 0 / 23620 | 0 | |
| juvenile | 1 / 55556 | 17 | |
| adult | 10 / 1939121 | 5 | |
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
| |||
| adrenal tumor | 0 / 12794 | 0 | |
| bladder carcinoma | 0 / 17475 | 0 | |
| breast (mammary gland) tumor | 0 / 94178 | 0 | |
| cervical tumor | 0 / 34366 | 0 | |
| chondrosarcoma | 0 / 82823 | 0 | |
| colorectal tumor | 0 / 114246 | 0 | |
| esophageal tumor | 0 / 17290 | 0 | |
| gastrointestinal tumor | 0 / 119369 | 0 | |
| germ cell tumor | 0 / 263845 | 0 | |
| glioma | 0 / 106883 | 0 | |
| head and neck tumor | 0 / 136302 | 0 | |
| kidney tumor | 2 / 68959 | 29 | |
| leukemia | 3 / 95842 | 31 | |
| liver tumor | 1 / 96359 | 10 | |
| lung tumor | 0 / 103127 | 0 | |
| lymphoma | 0 / 71755 | 0 | |
| non-neoplasia | 0 / 97250 | 0 | |
| normal | 16 / 3360307 | 4 | |
| ovarian tumor | 0 / 76682 | 0 | |
| pancreatic tumor | 0 / 104616 | 0 | |
| primitive neuroectodermal tumor of the CNS | 0 / 125680 | 0 | |
| prostate cancer | 0 / 102680 | 0 | |
| retinoblastoma | 0 / 46356 | 0 | |
| skin tumor | 0 / 124949 | 0 | |
| soft tissue/muscle tissue tumor | 0 / 125191 | 0 | |
| uterine tumor | 0 / 90257 | 0 |
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
| |||
| adipose tissue | 0 / 13106 | 0 | |
| adrenal gland | 0 / 33197 | 0 | |
| ascites | 0 / 40015 | 0 | |
| bladder | 0 / 29757 | 0 | |
| blood | 3 / 123478 | 24 | |
| bone | 1 / 71655 | 13 | |
| bone marrow | 1 / 48801 | 20 | |
| brain | 4 / 1100989 | 3 | |
| cervix | 0 / 48171 | 0 | |
| connective tissue | 0 / 149255 | 0 | |
| ear | 0 / 16212 | 0 | |
| embryonic tissue | 1 / 215722 | 4 | |
| esophagus | 0 / 20209 | 0 | |
| eye | 1 / 211054 | 4 | |
| heart | 0 / 89626 | 0 | |
| intestine | 0 / 234472 | 0 | |
| kidney | 2 / 211777 | 9 | |
| larynx | 0 / 24145 | 0 | |
| liver | 1 / 207743 | 4 | |
| lung | 3 / 336974 | 8 | |
| lymph | 0 / 44270 | 0 | |
| lymph node | 0 / 91610 | 0 | |
| mammary gland | 3 / 153271 | 19 | |
| mouth | 0 / 67052 | 0 | |
| muscle | 0 / 107715 | 0 | |
| nerve | 1 / 15768 | 63 |  |
| ovary | 0 / 102051 | 0 | |
| pancreas | 0 / 214812 | 0 | |
| parathyroid | 0 / 20539 | 0 | |
| pharynx | 0 / 41328 | 0 | |
| pituitary gland | 0 / 16585 | 0 | |
| placenta | 0 / 280825 | 0 | |
| prostate | 1 / 189345 | 5 | |
| salivary gland | 0 / 20155 | 0 | |
| skin | 1 / 210574 | 4 | |
| spleen | 0 / 53952 | 0 | |
| stomach | 0 / 96619 | 0 | |
| testis | 0 / 330442 | 0 | |
| thymus | 0 / 81131 | 0 | |
| thyroid | 0 / 47473 | 0 | |
| tonsil | 0 / 16999 | 0 | |
| trachea | 0 / 52413 | 0 | |
| umbilical cord | 0 / 13680 | 0 | |
| uterus | 0 / 232878 | 0 | |
| vascular | 2 / 51780 | 38 | |
Microarray in - Probe name: A_24_P418203
- Donor H0351.2001
- Sex: Male Age: 24 years Race/Ethnicity: African American Handedness: Left
- Tissue Receipt Date: 7/29/2009 Serology: Pass Tissue pH :6.72 Additional Medical Information :History of asthma
- Postmortem Interval: 23 hours (estimated time of death to time that tissue is frozen)
- Toxicology: Positive for atropine and caffeine, at levels usually not toxicologically significant
| Tissue | Expression(mean ± stddev) | Expression Bar |
|---|---|---|
| Amygdala | 5.21 ± 0.45 | ![](../"images/bar_3.png"){kind=small}   |
| Basal Forebrain | 5.57 ± 0.5 | |
| Basal Part of Pons | 5.95 ± 0.31 | |
| Cerebellar Cortex | 4.74 ± 0.46 | |
| Cerebellar Nuclei | 4.75 ± 0.46 | |
| Claustrum | 5.67 ± 0.48 | |
| Epithalamus | 6.3 ± 0.58 | |
| Frontal Lobe | 5.36 ± 0.46 | |
| Globus Pallidus | 4.99 ± 0.83 | |
| Hypothalamus | 5.32 ± 0.74 | |
| Insula | 5.59 ± 0.38 | |
| Limbic Lobe | 5.74 ± 0.54 | |
| Mesencephalon | 5.23 ± 0.58 | |
| Myelencephalon | 5.26 ± 0.58 | |
| Occipital Lobe | 4.87 ± 0.81 | |
| Parietal Lobe | 5.2 ± 0.49 | |
| Pontine Tegmentum | 5.1 ± 0.55 | |
| Striatum | 5.94 ± 0.55 | |
| Subthalamus | 4.3 ± 0.53 | |
| Temporal Lobe | 5.29 ± 0.41 | |
| Thalamus | 4.83 ± 0.59 | |
| White Matter | 4.27 ± 0.47 | |
Mouse Brain ISH 
| Gene Symbol | Brain Structure ID | Brain Structure Name | Express Desity/Level (Meatured by ISH) | Express Bar |
|---|---|---|---|---|
| Cntnap3 | CB | Cerebellum | 4.72 | |
| 6.05 | | |||
| Cntnap3 | CTX | Cerebral cortex | 18.54 | |
| 14.52 | | |||
| Cntnap3 | HIP | Hippocampal region | 9.68 | |
| 10.28 | | |||
| Cntnap3 | HPF | Hippocampal formation | 19.67 | |
| 19.71 | | |||
| Cntnap3 | HY | Hypothalamus | 4.82 | |
| 3.79 | | |||
| Cntnap3 | LSX | Lateral septal complex | 9.37 | |
| 6.42 | | |||
| Cntnap3 | MB | Midbrain | 5.07 | |
| 5.64 | | |||
| Cntnap3 | MY | Medulla | 9.7 | |
| 11.25 | | |||
| Cntnap3 | OLF | Olfactory bulb | 28.77 | |
| 28.2 | | |||
| Cntnap3 | P | Pons | 6.59 | |
| 7.82 | | |||
| Cntnap3 | PAL | Pallidum | 10.53 | |
| 8.8 | | |||
| Cntnap3 | RHP | Retrohippocampal region | 35.71 | |
| 32.51 | | |||
| Cntnap3 | sAMY | Striatum-like amygdalar nuclei | 13.4 | |
| 10.27 | | |||
| Cntnap3 | STR | Striatum | 24.4 | |
| 17.81 | | |||
| Cntnap3 | STRd | Striatum dorsal region | 26.21 | |
| 19.44 | | |||
| Cntnap3 | STRv | Striatum ventral region | 29.78 | |
| 20.27 | | |||
| Cntnap3 | TH | Thalamus | 11.02 | |
| 10.32 | |