AutismKB 2.0

Annotation Detail for PSCA


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Basic Information Top
Gene Symbol:PSCA ( PRO232 )
Gene Full Name: prostate stem cell antigen
Band: 8q24.3
Quick LinksEntrez ID:8000; OMIM: 602470; Uniprot ID:D3DWI6_HUMAN; ENSEMBL ID: ENSG00000167653; HGNC ID: 9500
Relate to Another Database: SFARIGene; denovo-db
Unigene EST Top
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
embryoid body0 / 707610 
blastocyst0 / 623190 
fetus5 / 5640128
neonate0 / 310970 
infant0 / 236200 
juvenile0 / 555560 
adult60 / 193912130
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
adrenal tumor0 / 127940 
bladder carcinoma2 / 17475114
breast (mammary gland) tumor1 / 9417810
cervical tumor2 / 3436658
chondrosarcoma2 / 8282324
colorectal tumor0 / 1142460 
esophageal tumor0 / 172900 
gastrointestinal tumor5 / 11936941
germ cell tumor0 / 2638450 
glioma2 / 10688318
head and neck tumor0 / 1363020 
kidney tumor0 / 689590 
leukemia2 / 9584220
liver tumor0 / 963590 
lung tumor0 / 1031270 
lymphoma0 / 717550 
non-neoplasia5 / 9725051
normal61 / 336030718
ovarian tumor0 / 766820 
pancreatic tumor5 / 10461647
primitive neuroectodermal tumor of the CNS0 / 1256800 
prostate cancer3 / 10268029
retinoblastoma0 / 463560 
skin tumor17 / 124949136
soft tissue/muscle tissue tumor0 / 1251910 
uterine tumor0 / 902570 
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
adipose tissue0 / 131060 
adrenal gland0 / 331970 
ascites2 / 4001549
bladder1 / 2975733
blood0 / 1234780 
bone3 / 7165541
bone marrow0 / 488010 
brain2 / 11009891
cervix2 / 4817141
connective tissue1 / 1492556
ear0 / 162120 
embryonic tissue0 / 2157220 
esophagus0 / 202090 
eye6 / 21105428
heart1 / 8962611
intestine2 / 2344728
kidney1 / 2117774
larynx0 / 241450 
liver1 / 2077434
lung5 / 33697414
lymph0 / 442700 
lymph node0 / 916100 
mammary gland2 / 15327113
mouth0 / 670520 
muscle0 / 1077150 
nerve0 / 157680 
ovary0 / 1020510 
pancreas5 / 21481223
parathyroid0 / 205390 
pharynx0 / 413280 
pituitary gland0 / 165850 
placenta14 / 28082549
prostate23 / 189345121
salivary gland0 / 201550 
skin17 / 21057480
spleen0 / 539520 
stomach13 / 96619134
testis0 / 3304420 
thymus0 / 811310 
thyroid0 / 474730 
tonsil0 / 169990 
trachea1 / 5241319
umbilical cord0 / 136800 
uterus0 / 2328780 
vascular0 / 517800 
Microarray in BioGPS Top
Select probe  
  • Microarray Platform: Primary tumors (U95A)
  • Affymatrix Probe ID: 33792_at
Cell line Expression level Expression bar
Pr1T11.878
Pr4T3.404
Pr5T4078.354
Pr7T3.417
Pr1N3.594
Pr5N869.601
Pr6T3.722
Pr3N3.22
Pr3T37.55
Pr4N4.934
Pr2N720.689
Pr8N1202.171
Pr8T404.636
Pr9N1207.973
Pr10N11.81
Pr10T3.468
Pr9T3.127
Pr11T3.365
Pr12T50.064
Pr13AT3.327
Pr13BT3.276
Pr21T15.09
Pr22T3.306
Pr30T1200.639
Pr23T3.529
Pr19T3.388
Pr26T3.35
Pr31T3.35
Pr16T3.347
Pr17T3.334
Pr24T3.223
Pr27T3.397
Pr29T4.37
OVR1023.257
HUOVR3.111
G23.626
G33.488
G53.41
G63.384
G83.349
G97769.191
CO7T3.476
CO8T3.157
CO15T3.455
CO27T3.46
CO30T3.617
CO32T3.442
CO40T3.345
CO52N3.787
CO62N3.608
K13.269
K23.31
K32.992
K43.291
K14N3.841
K163.402
K173.8
K193.36
K203.363
K223.407
CO9T3.332
CO20T3.591
CO24T3.463
CO36N3.677
K183.28
P1N3.216
P2N3.459
P5N3.557
P84304.745
P1119.384
P173.447
K213.481
K25N3.615
K28N3.637
CO42T3.498
P22812.012
P13N119.035
LU11T3.394
LU16T3.498
LU7T3.204
LU8T3.297
LU12T3.396
LU13T3.375
LU5T18.152
LU6T3.611
LU14T4.008
LU17T3.544
LU50N3.119
LU52N3.47
LU18T1920.504
LU55N3.338
LU3N3.571
P16B59.102
P23190.383
OVR163.243
OVR193.399
OVR273.267
OVR283.147
OVR278E3.453
OVR23.296
OVR53.25
OVR83.473
OVR113.407
OVR123.43
OVR133.293
OVR223.445
OVR263.397
OVR103.546
OVR278S3.552
OVR13.343
LU19T3.335
LU20T3.38
LU24T3.402
LU25T3.42
LU31T3.718
LU34T3.506
LU39T3.04
CO14T3.502
CO21T3.765
CO23T3.489
CO41N3.334
LU40T3.621
LU41T3.125
LU44T54.648
LU46T3.424
LU49T3.429
L5N3.488
LU42T3.439
LU30T3.463
LU43T3.716
CO5T3.358
CO44T3.202
CO49T3.461
CO51T3.469
CO56T3.279
CO61T3.287
LU26T3.464
LU33T3.647
LU36T3.268
CO43T3.556
G183.661
G463.435
L11T3.717
L13N3.581
L30T3.668
L31T3.549
L32T3.807
L34T3.776
L35T3.681
B1N3.751
B5N3.375
B8T3.406
B10T3.366
B14T3.734
B16T3.406
B17T3.41
B1NR3.623
B20T3.766
B51NR3.533
B6T3.783
B15T3.774
B21T9868.746
B29T3.501
B31T3.778
B32T371.683
B24T3.371
B46T3.298
B34T3.423
B36T3.446
B37T3.585
B38T3.444
B39T3.238
X1023.461
X116_023.495
G2803.226
X463.322
X583.287
G1863.559
G2963.446
L38T3.499
L31T.212038.456
L26N138.315
N257ANTR3.427
N285BODY702.684
Allen Brain Atlas Top
Human Whole Brain Microarrayview in Allen Brain Atlas
  • Probe id     Donor id      
  • Probe name: A_24_P201021
  • Donor H0351.2001
  • Sex: Male     Age: 24 years     Race/Ethnicity: African American     Handedness: Left
  • Tissue Receipt Date: 7/29/2009     Serology: Pass      Tissue pH :6.72     Additional Medical Information :History of asthma
  • Postmortem Interval: 23 hours (estimated time of death to time that tissue is frozen)
  • Toxicology: Positive for atropine and caffeine, at levels usually not toxicologically significant
Tissue Expression(mean ± stddev) Expression Bar
Amygdala2.03 ± 1.11
Basal Forebrain1.5 ± 0.23
Basal Part of Pons1.3 ± 0.55
Cerebellar Cortex1.43 ± 0.78
Cerebellar Nuclei1.81 ± 0.67
Claustrum2.75 ± 1.08
Epithalamus1.25 ± 0.83
Frontal Lobe1.46 ± 0.76
Globus Pallidus2.07 ± 0.32
Hypothalamus1.82 ± 0.9
Insula1.51 ± 0.68
Limbic Lobe1.58 ± 0.78
Mesencephalon1.73 ± 0.77
Myelencephalon1.64 ± 0.75
Occipital Lobe1.61 ± 0.75
Parietal Lobe1.55 ± 0.77
Pontine Tegmentum1.62 ± 0.75
Striatum1.72 ± 0.63
Subthalamus1.74 ± 0.68
Temporal Lobe1.6 ± 0.86
Thalamus1.56 ± 0.63
White Matter1.87 ± 0.24
Mouse Brain ISH
Gene Symbol Brain Structure ID Brain Structure Name Express Desity/Level (Meatured by ISH) Express Bar
PscaCBCerebellum100
100
PscaCTXCerebral cortex100
85.45
PscaHIPHippocampal region77.6
100
PscaHPFHippocampal formation82.68
100
PscaHYHypothalamus47.64
38.95
PscaLSXLateral septal complex32.03
25.88
PscaMBMidbrain62.28
56.5
PscaMYMedulla73.83
74.39
PscaOLFOlfactory bulb100
100
PscaPPons71.26
69.16
PscaPALPallidum51.51
44.92
PscaRHPRetrohippocampal region92.71
83.7
PscasAMYStriatum-like amygdalar nuclei100
98.95
PscaSTRStriatum88.45
69.6
PscaSTRdStriatum dorsal region92.47
73.2
PscaSTRvStriatum ventral region89.17
66.74
PscaTHThalamus76.6
69.26
Peptide Top
Peptide Name Peptide Lengh Peptide Start Peptide End Peptide Sequence Source
PAp00095930 17 65 81 GCSLNCVDDSQDYYVGK Peptide Atlas

Simple Query:


  (e.g. CHD8)

Syndromic Genes

Non-syndromic Genes

AutismKB Statistics

  • Studies: 1,036
  • Genes: 1,379
  • CNVs/SVs: 5,420
  • SNVs/Indels: 11,669
  • de novo Mutations: 5,669
  • Mosaics: 789
  • Linkage Regions: 172
  • Paper Collected: 6/30/2018
  • Last Update: 8/26/2018


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