Annotation Detail for PHC3
Basic Information Top
| Gene Symbol: | PHC3 ( DKFZp313K1221,EDR3,FLJ12729,FLJ12967,HPH3,MGC88144 ) |
|---|---|
| Gene Full Name: | polyhomeotic homolog 3 (Drosophila) |
| Band: | 3q26.2 |
| Quick Links | Entrez ID:80012; OMIM: NA; Uniprot ID:PHC3_HUMAN; ENSEMBL ID: ENSG00000173889; HGNC ID: 15682 |
| Relate to Another Database: | SFARIGene; denovo-db |
- Unigene ID: Hs.529592
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
 | |||
| embryoid body | 3 / 70761 | 42 |  |
| blastocyst | 0 / 62319 | 0 | |
| fetus | 23 / 564012 | 40 | |
| neonate | 0 / 31097 | 0 | |
| infant | 0 / 23620 | 0 | |
| juvenile | 3 / 55556 | 53 |  |
| adult | 100 / 1939121 | 51 | |
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
| |||
| adrenal tumor | 1 / 12794 | 78 | |
| bladder carcinoma | 1 / 17475 | 57 | |
| breast (mammary gland) tumor | 3 / 94178 | 31 | |
| cervical tumor | 0 / 34366 | 0 | |
| chondrosarcoma | 2 / 82823 | 24 | |
| colorectal tumor | 6 / 114246 | 52 | |
| esophageal tumor | 1 / 17290 | 57 | |
| gastrointestinal tumor | 2 / 119369 | 16 | |
| germ cell tumor | 10 / 263845 | 37 | |
| glioma | 5 / 106883 | 46 | |
| head and neck tumor | 18 / 136302 | 132 | |
| kidney tumor | 5 / 68959 | 72 | |
| leukemia | 3 / 95842 | 31 | |
| liver tumor | 4 / 96359 | 41 | |
| lung tumor | 0 / 103127 | 0 | |
| lymphoma | 2 / 71755 | 27 | |
| non-neoplasia | 1 / 97250 | 10 |  |
| normal | 111 / 3360307 | 33 | |
| ovarian tumor | 2 / 76682 | 26 | |
| pancreatic tumor | 1 / 104616 | 9 | |
| primitive neuroectodermal tumor of the CNS | 1 / 125680 | 7 | |
| prostate cancer | 8 / 102680 | 77 | |
| retinoblastoma | 0 / 46356 | 0 | |
| skin tumor | 0 / 124949 | 0 | |
| soft tissue/muscle tissue tumor | 0 / 125191 | 0 | |
| uterine tumor | 6 / 90257 | 66 | |
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
| |||
| adipose tissue | 1 / 13106 | 76 | |
| adrenal gland | 1 / 33197 | 30 | |
| ascites | 1 / 40015 | 24 | |
| bladder | 1 / 29757 | 33 | |
| blood | 4 / 123478 | 32 | |
| bone | 6 / 71655 | 83 | |
| bone marrow | 0 / 48801 | 0 | |
| brain | 25 / 1100989 | 22 | |
| cervix | 4 / 48171 | 83 | |
| connective tissue | 2 / 149255 | 13 | |
| ear | 4 / 16212 | 246 |  |
| embryonic tissue | 3 / 215722 | 13 | |
| esophagus | 1 / 20209 | 49 | |
| eye | 7 / 211054 | 33 | |
| heart | 0 / 89626 | 0 | |
| intestine | 9 / 234472 | 38 | |
| kidney | 11 / 211777 | 51 | |
| larynx | 2 / 24145 | 82 | |
| liver | 7 / 207743 | 33 | |
| lung | 6 / 336974 | 17 | |
| lymph | 2 / 44270 | 45 | |
| lymph node | 9 / 91610 | 98 | |
| mammary gland | 15 / 153271 | 97 | |
| mouth | 9 / 67052 | 134 | |
| muscle | 6 / 107715 | 55 | |
| nerve | 0 / 15768 | 0 | |
| ovary | 2 / 102051 | 19 | |
| pancreas | 1 / 214812 | 4 | |
| parathyroid | 3 / 20539 | 146 | |
| pharynx | 8 / 41328 | 193 | |
| pituitary gland | 1 / 16585 | 60 | |
| placenta | 8 / 280825 | 28 | |
| prostate | 7 / 189345 | 36 | |
| salivary gland | 0 / 20155 | 0 | |
| skin | 2 / 210574 | 9 | |
| spleen | 1 / 53952 | 18 | |
| stomach | 1 / 96619 | 10 | |
| testis | 20 / 330442 | 60 | |
| thymus | 6 / 81131 | 73 | |
| thyroid | 6 / 47473 | 126 | |
| tonsil | 0 / 16999 | 0 | |
| trachea | 6 / 52413 | 114 | |
| umbilical cord | 0 / 13680 | 0 | |
| uterus | 10 / 232878 | 42 | |
| vascular | 3 / 51780 | 57 | |
Microarray in - Probe name: A_32_P179590
- Donor H0351.2001
- Sex: Male Age: 24 years Race/Ethnicity: African American Handedness: Left
- Tissue Receipt Date: 7/29/2009 Serology: Pass Tissue pH :6.72 Additional Medical Information :History of asthma
- Postmortem Interval: 23 hours (estimated time of death to time that tissue is frozen)
- Toxicology: Positive for atropine and caffeine, at levels usually not toxicologically significant
| Tissue | Expression(mean ± stddev) | Expression Bar |
|---|---|---|
| Amygdala | 2.05 ± 1.01 | ![](../"images/bar_3.png"){kind=small}   |
| Basal Forebrain | 1.62 ± 0.2 | |
| Basal Part of Pons | 1.33 ± 0.37 | |
| Cerebellar Cortex | 1.48 ± 0.7 | |
| Cerebellar Nuclei | 1.95 ± 0.7 | |
| Claustrum | 2.49 ± 0.83 | |
| Epithalamus | 1.31 ± 0.7 | |
| Frontal Lobe | 1.49 ± 0.63 | |
| Globus Pallidus | 2.22 ± 0.31 | |
| Hypothalamus | 1.71 ± 0.64 | |
| Insula | 1.54 ± 0.57 | |
| Limbic Lobe | 1.62 ± 0.63 | |
| Mesencephalon | 1.77 ± 0.68 | |
| Myelencephalon | 1.67 ± 0.66 | |
| Occipital Lobe | 1.68 ± 0.72 | |
| Parietal Lobe | 1.58 ± 0.62 | |
| Pontine Tegmentum | 1.67 ± 0.63 | |
| Striatum | 1.83 ± 0.65 | |
| Subthalamus | 1.77 ± 0.62 | |
| Temporal Lobe | 1.51 ± 0.59 | |
| Thalamus | 1.6 ± 0.57 | |
| White Matter | 2.14 ± 0.31 | |
Mouse Brain ISH 
| Gene Symbol | Brain Structure ID | Brain Structure Name | Express Desity/Level (Meatured by ISH) | Express Bar |
|---|---|---|---|---|
| Phc3 | CB | Cerebellum | 70.65 | |
| 100 | | |||
| Phc3 | CTX | Cerebral cortex | 100 | |
| 100 | | |||
| Phc3 | HIP | Hippocampal region | 85.28 | |
| 100 | | |||
| Phc3 | HPF | Hippocampal formation | 97.38 | |
| 100 | | |||
| Phc3 | HY | Hypothalamus | 90.64 | |
| 78.16 | | |||
| Phc3 | LSX | Lateral septal complex | 100 | |
| 100 | | |||
| Phc3 | MB | Midbrain | 87.67 | |
| 82.03 | | |||
| Phc3 | MY | Medulla | 78.81 | |
| 81.37 | | |||
| Phc3 | OLF | Olfactory bulb | 100 | |
| 100 | | |||
| Phc3 | P | Pons | 71.61 | |
| 71.75 | | |||
| Phc3 | PAL | Pallidum | 83.04 | |
| 77.65 | | |||
| Phc3 | RHP | Retrohippocampal region | 100 | |
| 100 | | |||
| Phc3 | sAMY | Striatum-like amygdalar nuclei | 92.94 | |
| 74.87 | | |||
| Phc3 | STR | Striatum | 100 | |
| 89.03 | | |||
| Phc3 | STRd | Striatum dorsal region | 100 | |
| 88.25 | | |||
| Phc3 | STRv | Striatum ventral region | 100 | |
| 94.38 | | |||
| Phc3 | TH | Thalamus | 100 | |
| 100 | |
| Peptide Name | Peptide Lengh | Peptide Start | Peptide End | Peptide Sequence | Source |
|---|---|---|---|---|---|
| PAp00041305 | 24 | 733 | 756 | KRPLLDNQVINSVCVQPELQNNTK | Peptide Atlas |
| PHC3_HUMAN_606 | 19 | 606 | 624 | MDRTPPPPTLSPAAITVGR | PRIDE |