AutismKB 2.0

Annotation Detail for DCAF17


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Basic Information Top
Gene Symbol:DCAF17 ( C2orf37,DKFZp781C2086,FLJ13096,FLJ44210 )
Gene Full Name: DDB1 and CUL4 associated factor 17
Band: 2q31.1
Quick LinksEntrez ID:80067; OMIM: 612515; Uniprot ID:DCA17_HUMAN; ENSEMBL ID: ENSG00000115827; HGNC ID: 25784
Relate to Another Database: SFARIGene; denovo-db
Unigene EST Top
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
embryoid body4 / 7076156
blastocyst2 / 6231932
fetus9 / 56401215
neonate0 / 310970 
infant0 / 236200 
juvenile0 / 555560 
adult32 / 193912116
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
adrenal tumor0 / 127940 
bladder carcinoma1 / 1747557
breast (mammary gland) tumor2 / 9417821
cervical tumor0 / 343660 
chondrosarcoma0 / 828230 
colorectal tumor1 / 1142468
esophageal tumor0 / 172900 
gastrointestinal tumor0 / 1193690 
germ cell tumor9 / 26384534
glioma0 / 1068830 
head and neck tumor2 / 13630214
kidney tumor1 / 6895914
leukemia0 / 958420 
liver tumor1 / 9635910
lung tumor0 / 1031270 
lymphoma1 / 7175513
non-neoplasia2 / 9725020
normal55 / 336030716
ovarian tumor2 / 7668226
pancreatic tumor0 / 1046160 
primitive neuroectodermal tumor of the CNS5 / 12568039
prostate cancer0 / 1026800 
retinoblastoma0 / 463560 
skin tumor2 / 12494916
soft tissue/muscle tissue tumor4 / 12519131
uterine tumor3 / 9025733
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
adipose tissue0 / 131060 
adrenal gland0 / 331970 
ascites0 / 400150 
bladder1 / 2975733
blood3 / 12347824
bone0 / 716550 
bone marrow2 / 4880140
brain21 / 110098919
cervix0 / 481710 
connective tissue0 / 1492550 
ear0 / 162120 
embryonic tissue8 / 21572237
esophagus0 / 202090 
eye3 / 21105414
heart0 / 896260 
intestine1 / 2344724
kidney2 / 2117779
larynx0 / 241450 
liver2 / 2077439
lung2 / 3369745
lymph0 / 442700 
lymph node0 / 916100 
mammary gland4 / 15327126
mouth2 / 6705229
muscle7 / 10771564
nerve0 / 157680 
ovary2 / 10205119
pancreas0 / 2148120 
parathyroid0 / 205390 
pharynx0 / 413280 
pituitary gland0 / 165850 
placenta6 / 28082521
prostate0 / 1893450 
salivary gland1 / 2015549
skin3 / 21057414
spleen1 / 5395218
stomach1 / 9661910
testis10 / 33044230
thymus4 / 8113149
thyroid0 / 474730 
tonsil0 / 169990 
trachea1 / 5241319
umbilical cord0 / 136800 
uterus7 / 23287830
vascular1 / 5178019
Microarray in BioGPS Top
Select probe  
  • Microarray Platform: GeneAtlas U133A, gcrma
  • Affymatrix Probe ID: 220172_at
Cell line Expression level Expression bar
721_B_lymphoblasts7.25
Adipocyte5.7
AdrenalCortex6.45
Adrenalgland4.9
Amygdala6
Appendix7.05
AtrioventricularNode5.25
BDCA4+_DentriticCells5.8
Bonemarrow5.7
BronchialEpithelialCells5.55
CD105+_Endothelial6.05
CD14+_Monocytes6.2
CD19+_BCells(neg._sel.)5.95
CD33+_Myeloid8.7
CD34+7.2
CD4+_Tcells6.9
CD56+_NKCells8.15
CD71+_EarlyErythroid5.45
CD8+_Tcells5.75
CardiacMyocytes8.35
Caudatenucleus5.15
Cerebellum4.7
CerebellumPeduncles7.35
CiliaryGanglion4.7
CingulateCortex5.9
Colorectaladenocarcinoma5.7
DorsalRootGanglion5.35
FetalThyroid5.7
Fetalbrain5.85
Fetalliver5
Fetallung4.6
GlobusPallidus4.3
Heart8.2
Hypothalamus6.05
Kidney4.7
Leukemia_chronicMyelogenousK-5625.25
Leukemia_promyelocytic-HL-605.05
Leukemialymphoblastic(MOLT-4)4.35
Liver7.8
Lung6.2
Lymphnode4.65
Lymphoma_burkitts(Daudi)7.65
Lymphoma_burkitts(Raji)8.65
MedullaOblongata5.15
OccipitalLobe5.05
OlfactoryBulb4.4
Ovary4.45
Pancreas4.75
PancreaticIslet6.1
ParietalLobe6.2
Pituitary6.6
Placenta5.8
Pons5.6
PrefrontalCortex7.2
Prostate6.6
Salivarygland4.65
SkeletalMuscle7.6
Skin5
SmoothMuscle6.5
Spinalcord6
SubthalamicNucleus5.55
SuperiorCervicalGanglion8.15
TemporalLobe5.35
Testis4.85
TestisGermCell4.65
TestisIntersitial5.25
TestisLeydigCell5.75
TestisSeminiferousTubule4.9
Thalamus5.85
Thymus4.3
Thyroid7.35
Tongue5.8
Tonsil5.65
Trachea4.8
TrigeminalGanglion8.35
Uterus4.5
UterusCorpus5.55
WholeBlood6.3
Wholebrain4.5
colon5.85
pineal_day7.12
pineal_night7.48
retina6.975
small_intestine5.4
Allen Brain Atlas Top
Human Whole Brain Microarrayview in Allen Brain Atlas
  • Probe id     Donor id      
  • Probe name: CUST_9988_PI416261804
  • Donor H0351.2001
  • Sex: Male     Age: 24 years     Race/Ethnicity: African American     Handedness: Left
  • Tissue Receipt Date: 7/29/2009     Serology: Pass      Tissue pH :6.72     Additional Medical Information :History of asthma
  • Postmortem Interval: 23 hours (estimated time of death to time that tissue is frozen)
  • Toxicology: Positive for atropine and caffeine, at levels usually not toxicologically significant
Tissue Expression(mean ± stddev) Expression Bar
Amygdala2.8 ± 0.96
Basal Forebrain2.38 ± 0.4
Basal Part of Pons2.28 ± 0.65
Cerebellar Cortex2.57 ± 0.58
Cerebellar Nuclei2.64 ± 0.69
Claustrum2.82 ± 0.87
Epithalamus2.73 ± 0.23
Frontal Lobe2.5 ± 0.69
Globus Pallidus2.71 ± 0.59
Hypothalamus2.5 ± 0.65
Insula2.55 ± 0.77
Limbic Lobe2.56 ± 0.5
Mesencephalon2.62 ± 0.78
Myelencephalon2.58 ± 0.65
Occipital Lobe2.67 ± 0.7
Parietal Lobe2.59 ± 0.62
Pontine Tegmentum2.64 ± 0.68
Striatum2.64 ± 0.73
Subthalamus2.86 ± 0.19
Temporal Lobe2.41 ± 0.68
Thalamus2.59 ± 0.63
White Matter3.89 ± 0.15
Mouse Brain ISH
Gene Symbol Brain Structure ID Brain Structure Name Express Desity/Level (Meatured by ISH) Express Bar
4833418A01RikCBCerebellum2.85
3.06
4833418A01RikCTXCerebral cortex13.59
9.26
4833418A01RikHIPHippocampal region7.04
6.54
4833418A01RikHPFHippocampal formation6.33
5.43
4833418A01RikHYHypothalamus2.87
3.2
4833418A01RikLSXLateral septal complex0.16
0.7
4833418A01RikMBMidbrain2.08
2.42
4833418A01RikMYMedulla2.32
2.44
4833418A01RikOLFOlfactory bulb21.69
16.91
4833418A01RikPPons4.14
5.5
4833418A01RikPALPallidum8.82
7.41
4833418A01RikRHPRetrohippocampal region4.62
3.47
4833418A01RiksAMYStriatum-like amygdalar nuclei12.9
8.09
4833418A01RikSTRStriatum10.38
7.16
4833418A01RikSTRdStriatum dorsal region9.99
6.8
4833418A01RikSTRvStriatum ventral region15.11
10.15
4833418A01RikTHThalamus3.08
2.3
Peptide Top

Simple Query:


  (e.g. CHD8)

Syndromic Genes

Non-syndromic Genes

AutismKB Statistics

  • Studies: 1,036
  • Genes: 1,379
  • CNVs/SVs: 5,420
  • SNVs/Indels: 11,669
  • de novo Mutations: 5,669
  • Mosaics: 789
  • Linkage Regions: 172
  • Paper Collected: 6/30/2018
  • Last Update: 8/26/2018


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