Annotation Detail for PIF1
Basic Information Top
| Gene Symbol: | PIF1 ( C15orf20,PIF ) |
|---|---|
| Gene Full Name: | PIF1 5'-to-3' DNA helicase homolog (S. cerevisiae) |
| Band: | 15q22.31 |
| Quick Links | Entrez ID:80119; OMIM: 610953; Uniprot ID:PIF1_HUMAN; ENSEMBL ID: ENSG00000140451; HGNC ID: 26220 |
| Relate to Another Database: | SFARIGene; denovo-db |
- Unigene ID: Hs.112160
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
 | |||
| embryoid body | 4 / 70761 | 56 |  |
| blastocyst | 4 / 62319 | 64 | |
| fetus | 10 / 564012 | 17 |  |
| neonate | 0 / 31097 | 0 | |
| infant | 1 / 23620 | 42 | |
| juvenile | 0 / 55556 | 0 | |
| adult | 11 / 1939121 | 5 |  |
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
| |||
| adrenal tumor | 0 / 12794 | 0 | |
| bladder carcinoma | 0 / 17475 | 0 | |
| breast (mammary gland) tumor | 1 / 94178 | 10 | |
| cervical tumor | 0 / 34366 | 0 | |
| chondrosarcoma | 0 / 82823 | 0 | |
| colorectal tumor | 1 / 114246 | 8 | |
| esophageal tumor | 0 / 17290 | 0 | |
| gastrointestinal tumor | 0 / 119369 | 0 | |
| germ cell tumor | 8 / 263845 | 30 | |
| glioma | 0 / 106883 | 0 | |
| head and neck tumor | 1 / 136302 | 7 | |
| kidney tumor | 1 / 68959 | 14 | |
| leukemia | 0 / 95842 | 0 | |
| liver tumor | 0 / 96359 | 0 | |
| lung tumor | 1 / 103127 | 9 | |
| lymphoma | 2 / 71755 | 27 | |
| non-neoplasia | 2 / 97250 | 20 | |
| normal | 34 / 3360307 | 10 | |
| ovarian tumor | 2 / 76682 | 26 | |
| pancreatic tumor | 0 / 104616 | 0 | |
| primitive neuroectodermal tumor of the CNS | 1 / 125680 | 7 | |
| prostate cancer | 3 / 102680 | 29 | |
| retinoblastoma | 0 / 46356 | 0 | |
| skin tumor | 0 / 124949 | 0 | |
| soft tissue/muscle tissue tumor | 0 / 125191 | 0 | |
| uterine tumor | 2 / 90257 | 22 | |
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
| |||
| adipose tissue | 0 / 13106 | 0 | |
| adrenal gland | 0 / 33197 | 0 | |
| ascites | 0 / 40015 | 0 | |
| bladder | 0 / 29757 | 0 | |
| blood | 1 / 123478 | 8 | |
| bone | 0 / 71655 | 0 | |
| bone marrow | 0 / 48801 | 0 | |
| brain | 1 / 1100989 | 0 | |
| cervix | 1 / 48171 | 20 | |
| connective tissue | 0 / 149255 | 0 | |
| ear | 0 / 16212 | 0 | |
| embryonic tissue | 10 / 215722 | 46 | |
| esophagus | 0 / 20209 | 0 | |
| eye | 1 / 211054 | 4 | |
| heart | 2 / 89626 | 22 | |
| intestine | 4 / 234472 | 17 | |
| kidney | 1 / 211777 | 4 | |
| larynx | 0 / 24145 | 0 | |
| liver | 2 / 207743 | 9 | |
| lung | 3 / 336974 | 8 | |
| lymph | 2 / 44270 | 45 | |
| lymph node | 5 / 91610 | 54 | |
| mammary gland | 1 / 153271 | 6 | |
| mouth | 1 / 67052 | 14 | |
| muscle | 0 / 107715 | 0 | |
| nerve | 0 / 15768 | 0 | |
| ovary | 5 / 102051 | 48 | |
| pancreas | 0 / 214812 | 0 | |
| parathyroid | 0 / 20539 | 0 | |
| pharynx | 0 / 41328 | 0 | |
| pituitary gland | 0 / 16585 | 0 | |
| placenta | 2 / 280825 | 7 | |
| prostate | 4 / 189345 | 21 | |
| salivary gland | 0 / 20155 | 0 | |
| skin | 1 / 210574 | 4 | |
| spleen | 2 / 53952 | 37 | |
| stomach | 0 / 96619 | 0 | |
| testis | 0 / 330442 | 0 | |
| thymus | 0 / 81131 | 0 | |
| thyroid | 0 / 47473 | 0 | |
| tonsil | 0 / 16999 | 0 | |
| trachea | 0 / 52413 | 0 | |
| umbilical cord | 0 / 13680 | 0 | |
| uterus | 3 / 232878 | 12 | |
| vascular | 1 / 51780 | 19 | |
Microarray in - Probe name: A_23_P416468
- Donor H0351.2001
- Sex: Male Age: 24 years Race/Ethnicity: African American Handedness: Left
- Tissue Receipt Date: 7/29/2009 Serology: Pass Tissue pH :6.72 Additional Medical Information :History of asthma
- Postmortem Interval: 23 hours (estimated time of death to time that tissue is frozen)
- Toxicology: Positive for atropine and caffeine, at levels usually not toxicologically significant
| Tissue | Expression(mean ± stddev) | Expression Bar |
|---|---|---|
| Amygdala | 3.85 ± 0.75 | ![](../"images/bar_3.png"){kind=small}   |
| Basal Forebrain | 3.7 ± 0.65 | |
| Basal Part of Pons | 4.17 ± 0.41 | |
| Cerebellar Cortex | 3.05 ± 0.49 | |
| Cerebellar Nuclei | 4.26 ± 0.48 | |
| Claustrum | 4.27 ± 0.84 | |
| Epithalamus | 3.75 ± 0.99 | |
| Frontal Lobe | 4.02 ± 0.87 | |
| Globus Pallidus | 4.37 ± 0.56 | |
| Hypothalamus | 4.95 ± 0.8 | |
| Insula | 3.59 ± 0.76 | |
| Limbic Lobe | 3.44 ± 0.69 | |
| Mesencephalon | 4.4 ± 0.95 | |
| Myelencephalon | 4.01 ± 0.73 | |
| Occipital Lobe | 4.82 ± 0.7 | |
| Parietal Lobe | 4.35 ± 0.78 | |
| Pontine Tegmentum | 4.03 ± 0.8 | |
| Striatum | 3.9 ± 0.73 | |
| Subthalamus | 3.72 ± 0.17 | |
| Temporal Lobe | 3.58 ± 0.81 | |
| Thalamus | 3.65 ± 0.7 | |
| White Matter | 3.25 ± 0.5 | |
Mouse Brain ISH 
| Gene Symbol | Brain Structure ID | Brain Structure Name | Express Desity/Level (Meatured by ISH) | Express Bar |
|---|---|---|---|---|
| AI449441 | CB | Cerebellum | 2.28 | |
| 2.44 | | |||
| AI449441 | CTX | Cerebral cortex | 4.97 | |
| 3.07 | | |||
| AI449441 | HIP | Hippocampal region | 3.12 | |
| 2.67 | | |||
| AI449441 | HPF | Hippocampal formation | 3.64 | |
| 2.89 | | |||
| AI449441 | HY | Hypothalamus | 0.6 | |
| 0.52 | | |||
| AI449441 | LSX | Lateral septal complex | 1.28 | |
| 0.88 | | |||
| AI449441 | MB | Midbrain | 1.73 | |
| 1.47 | | |||
| AI449441 | MY | Medulla | 8.47 | |
| 8.51 | | |||
| AI449441 | OLF | Olfactory bulb | 10.1 | |
| 8.08 | | |||
| AI449441 | P | Pons | 7.15 | |
| 6.64 | | |||
| AI449441 | PAL | Pallidum | 2.28 | |
| 1.49 | | |||
| AI449441 | RHP | Retrohippocampal region | 5.03 | |
| 3.59 | | |||
| AI449441 | sAMY | Striatum-like amygdalar nuclei | 7.23 | |
| 3.98 | | |||
| AI449441 | STR | Striatum | 4.02 | |
| 2.57 | | |||
| AI449441 | STRd | Striatum dorsal region | 4.36 | |
| 2.84 | | |||
| AI449441 | STRv | Striatum ventral region | 3.44 | |
| 2.21 | | |||
| AI449441 | TH | Thalamus | 1.76 | |
| 1.19 | |