AutismKB 2.0

Annotation Detail for VCPIP1


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Basic Information Top
Gene Symbol:VCPIP1 ( DKFZp686G038,DUBA3,FLJ23132,FLJ60694,KIAA1850,VCIP135 )
Gene Full Name: valosin containing protein (p97)/p47 complex interacting protein 1
Band: 8q13.1
Quick LinksEntrez ID:80124; OMIM: 611745; Uniprot ID:VCIP1_HUMAN; ENSEMBL ID: ENSG00000175073; HGNC ID: 30897
Relate to Another Database: SFARIGene; denovo-db
Unigene EST Top
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
embryoid body1 / 7076114
blastocyst2 / 6231932
fetus12 / 56401221
neonate0 / 310970 
infant1 / 2362042
juvenile1 / 5555617
adult68 / 193912135
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
adrenal tumor0 / 127940 
bladder carcinoma1 / 1747557
breast (mammary gland) tumor6 / 9417863
cervical tumor0 / 343660 
chondrosarcoma1 / 8282312
colorectal tumor3 / 11424626
esophageal tumor0 / 172900 
gastrointestinal tumor2 / 11936916
germ cell tumor8 / 26384530
glioma2 / 10688318
head and neck tumor3 / 13630222
kidney tumor1 / 6895914
leukemia2 / 9584220
liver tumor1 / 9635910
lung tumor1 / 1031279
lymphoma0 / 717550 
non-neoplasia2 / 9725020
normal85 / 336030725
ovarian tumor0 / 766820 
pancreatic tumor1 / 1046169
primitive neuroectodermal tumor of the CNS2 / 12568015
prostate cancer0 / 1026800 
retinoblastoma0 / 463560 
skin tumor6 / 12494948
soft tissue/muscle tissue tumor4 / 12519131
uterine tumor3 / 9025733
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
adipose tissue0 / 131060 
adrenal gland3 / 3319790
ascites1 / 4001524
bladder1 / 2975733
blood4 / 12347832
bone1 / 7165513
bone marrow2 / 4880140
brain33 / 110098929
cervix0 / 481710 
connective tissue6 / 14925540
ear0 / 162120 
embryonic tissue3 / 21572213
esophagus0 / 202090 
eye2 / 2110549
heart0 / 896260 
intestine4 / 23447217
kidney4 / 21177718
larynx0 / 241450 
liver4 / 20774319
lung5 / 33697414
lymph0 / 442700 
lymph node6 / 9161065
mammary gland8 / 15327152
mouth3 / 6705244
muscle4 / 10771537
nerve1 / 1576863
ovary0 / 1020510 
pancreas2 / 2148129
parathyroid0 / 205390 
pharynx2 / 4132848
pituitary gland0 / 165850 
placenta6 / 28082521
prostate3 / 18934515
salivary gland0 / 201550 
skin9 / 21057442
spleen0 / 539520 
stomach1 / 9661910
testis14 / 33044242
thymus5 / 8113161
thyroid1 / 4747321
tonsil0 / 169990 
trachea2 / 5241338
umbilical cord0 / 136800 
uterus5 / 23287821
vascular0 / 517800 
Microarray in BioGPS Top
Select probe  
  • Microarray Platform: GeneAtlas U133A, gcrma
  • Affymatrix Probe ID: 219810_at
Cell line Expression level Expression bar
721_B_lymphoblasts6.25
Adipocyte4.95
AdrenalCortex5.3
Adrenalgland4.25
Amygdala5.25
Appendix5.25
AtrioventricularNode3.95
BDCA4+_DentriticCells6.55
Bonemarrow5.15
BronchialEpithelialCells4.9
CD105+_Endothelial5.05
CD14+_Monocytes6.05
CD19+_BCells(neg._sel.)5.55
CD33+_Myeloid10.4
CD34+6.55
CD4+_Tcells5.7
CD56+_NKCells6.15
CD71+_EarlyErythroid4.7
CD8+_Tcells4.95
CardiacMyocytes7.05
Caudatenucleus4.45
Cerebellum4.05
CerebellumPeduncles5.7
CiliaryGanglion3.55
CingulateCortex5.15
Colorectaladenocarcinoma5.05
DorsalRootGanglion3.85
FetalThyroid4.9
Fetalbrain5
Fetalliver4.35
Fetallung3.95
GlobusPallidus3.7
Heart7.05
Hypothalamus5.35
Kidney4.05
Leukemia_chronicMyelogenousK-5624.5
Leukemia_promyelocytic-HL-604.4
Leukemialymphoblastic(MOLT-4)3.95
Liver6.6
Lung5.4
Lymphnode4.25
Lymphoma_burkitts(Daudi)6.45
Lymphoma_burkitts(Raji)7.3
MedullaOblongata4.55
OccipitalLobe4.5
OlfactoryBulb3.9
Ovary3.3
Pancreas4
PancreaticIslet5.3
ParietalLobe5.3
Pituitary5.8
Placenta5.05
Pons4.9
PrefrontalCortex6.2
Prostate5.85
Salivarygland4.2
SkeletalMuscle6.45
Skin4.15
SmoothMuscle5.65
Spinalcord5.3
SubthalamicNucleus4.65
SuperiorCervicalGanglion5.7
TemporalLobe4.55
Testis4.3
TestisGermCell4.25
TestisIntersitial4.25
TestisLeydigCell4.95
TestisSeminiferousTubule4.25
Thalamus5.1
Thymus3.85
Thyroid6.25
Tongue5.1
Tonsil4.9
Trachea4.15
TrigeminalGanglion5.2
Uterus4.05
UterusCorpus4.5
WholeBlood5.45
Wholebrain4.1
colon5.05
pineal_day6.28
pineal_night6.14
retina6.2
small_intestine4.9
Allen Brain Atlas Top
Human Whole Brain Microarrayview in Allen Brain Atlas
  • Probe id     Donor id      
  • Probe name: CUST_8397_PI416261804
  • Donor H0351.2001
  • Sex: Male     Age: 24 years     Race/Ethnicity: African American     Handedness: Left
  • Tissue Receipt Date: 7/29/2009     Serology: Pass      Tissue pH :6.72     Additional Medical Information :History of asthma
  • Postmortem Interval: 23 hours (estimated time of death to time that tissue is frozen)
  • Toxicology: Positive for atropine and caffeine, at levels usually not toxicologically significant
Tissue Expression(mean ± stddev) Expression Bar
Amygdala7.37 ± 0.29
Basal Forebrain7.19 ± 0.25
Basal Part of Pons7.58 ± 0.13
Cerebellar Cortex7.38 ± 0.19
Cerebellar Nuclei7.48 ± 0.28
Claustrum7.38 ± 0.33
Epithalamus7.16 ± 0.19
Frontal Lobe7.43 ± 0.3
Globus Pallidus7.09 ± 0.27
Hypothalamus7.47 ± 0.26
Insula7.36 ± 0.24
Limbic Lobe7.32 ± 0.34
Mesencephalon7.32 ± 0.26
Myelencephalon7.32 ± 0.32
Occipital Lobe7.42 ± 0.27
Parietal Lobe7.48 ± 0.32
Pontine Tegmentum7.37 ± 0.31
Striatum7.08 ± 0.35
Subthalamus7.66 ± 0.34
Temporal Lobe7.37 ± 0.26
Thalamus7.36 ± 0.26
White Matter7.47 ± 0.06
Mouse Brain ISH
Gene Symbol Brain Structure ID Brain Structure Name Express Desity/Level (Meatured by ISH) Express Bar
Vcpip1CBCerebellum21.54
27.31
Vcpip1CTXCerebral cortex68.86
57.83
Vcpip1HIPHippocampal region40.65
69.56
Vcpip1HPFHippocampal formation47.42
60.81
Vcpip1HYHypothalamus10.2
9.19
Vcpip1LSXLateral septal complex17.21
13.82
Vcpip1MBMidbrain16.35
17.34
Vcpip1MYMedulla36.11
44.61
Vcpip1OLFOlfactory bulb47.97
41.08
Vcpip1PPons22.45
28.49
Vcpip1PALPallidum21.53
23.27
Vcpip1RHPRetrohippocampal region59.58
52.67
Vcpip1sAMYStriatum-like amygdalar nuclei33.02
27.11
Vcpip1STRStriatum26.61
20.05
Vcpip1STRdStriatum dorsal region28.85
21.49
Vcpip1STRvStriatum ventral region21.67
16.21
Vcpip1THThalamus31.04
29.73
Peptide Top
Peptide Name Peptide Lengh Peptide Start Peptide End Peptide Sequence Source
PAp00078148 18 314 331 SSGDYSATFLPGLIPAEK Peptide Atlas
VCIP1_HUMAN_368 19 368 386 LPMNLLPKAWGVPQDLIKK PRIDE

Simple Query:


  (e.g. CHD8)

Syndromic Genes

Non-syndromic Genes

AutismKB Statistics

  • Studies: 1,036
  • Genes: 1,379
  • CNVs/SVs: 5,420
  • SNVs/Indels: 11,669
  • de novo Mutations: 5,669
  • Mosaics: 789
  • Linkage Regions: 172
  • Paper Collected: 6/30/2018
  • Last Update: 8/26/2018


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