AutismKB 2.0

Annotation Detail for ARMC9


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Basic Information Top
Gene Symbol:ARMC9 ( ARM,FLJ12584,KU-MEL-1 )
Gene Full Name: armadillo repeat containing 9
Band: 2q37.1
Quick LinksEntrez ID:80210; OMIM: NA; Uniprot ID:ARMC9_HUMAN; ENSEMBL ID: ENSG00000135931; HGNC ID: 20730
Relate to Another Database: SFARIGene; denovo-db
Unigene EST Top
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
embryoid body3 / 7076142
blastocyst0 / 623190 
fetus17 / 56401230
neonate0 / 310970 
infant1 / 2362042
juvenile3 / 5555653
adult45 / 193912123
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
adrenal tumor0 / 127940 
bladder carcinoma0 / 174750 
breast (mammary gland) tumor2 / 9417821
cervical tumor0 / 343660 
chondrosarcoma5 / 8282360
colorectal tumor3 / 11424626
esophageal tumor0 / 172900 
gastrointestinal tumor3 / 11936925
germ cell tumor13 / 26384549
glioma3 / 10688328
head and neck tumor0 / 1363020 
kidney tumor4 / 6895958
leukemia1 / 9584210
liver tumor1 / 9635910
lung tumor1 / 1031279
lymphoma0 / 717550 
non-neoplasia2 / 9725020
normal74 / 336030722
ovarian tumor2 / 7668226
pancreatic tumor1 / 1046169
primitive neuroectodermal tumor of the CNS9 / 12568071
prostate cancer0 / 1026800 
retinoblastoma1 / 4635621
skin tumor11 / 12494988
soft tissue/muscle tissue tumor0 / 1251910 
uterine tumor3 / 9025733
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
adipose tissue0 / 131060 
adrenal gland0 / 331970 
ascites3 / 4001574
bladder0 / 297570 
blood2 / 12347816
bone4 / 7165555
bone marrow0 / 488010 
brain25 / 110098922
cervix0 / 481710 
connective tissue5 / 14925533
ear0 / 162120 
embryonic tissue8 / 21572237
esophagus0 / 202090 
eye10 / 21105447
heart0 / 896260 
intestine4 / 23447217
kidney4 / 21177718
larynx0 / 241450 
liver3 / 20774314
lung5 / 33697414
lymph0 / 442700 
lymph node0 / 916100 
mammary gland3 / 15327119
mouth0 / 670520 
muscle1 / 1077159
nerve0 / 157680 
ovary3 / 10205129
pancreas1 / 2148124
parathyroid0 / 205390 
pharynx0 / 413280 
pituitary gland1 / 1658560
placenta4 / 28082514
prostate3 / 18934515
salivary gland0 / 201550 
skin17 / 21057480
spleen0 / 539520 
stomach0 / 966190 
testis7 / 33044221
thymus1 / 8113112
thyroid0 / 474730 
tonsil0 / 169990 
trachea1 / 5241319
umbilical cord0 / 136800 
uterus6 / 23287825
vascular0 / 517800 
Microarray in BioGPS Top
Select probe  
  • Microarray Platform: GeneAtlas U133A, gcrma
  • Affymatrix Probe ID: 219637_at
Cell line Expression level Expression bar
721_B_lymphoblasts17.05
Adipocyte13.1
AdrenalCortex16.1
Adrenalgland26.8
Amygdala13.3
Appendix15
AtrioventricularNode12.35
BDCA4+_DentriticCells11.35
Bonemarrow14.3
BronchialEpithelialCells17.35
CD105+_Endothelial14.1
CD14+_Monocytes15.1
CD19+_BCells(neg._sel.)11.95
CD33+_Myeloid15.2
CD34+16.35
CD4+_Tcells12.7
CD56+_NKCells12.8
CD71+_EarlyErythroid13.05
CD8+_Tcells9.75
CardiacMyocytes19.8
Caudatenucleus12.9
Cerebellum11.55
CerebellumPeduncles16.1
CiliaryGanglion11.55
CingulateCortex15.6
Colorectaladenocarcinoma13.75
DorsalRootGanglion13.5
FetalThyroid14.8
Fetalbrain13.15
Fetalliver12.3
Fetallung10.3
GlobusPallidus11.3
Heart19.5
Hypothalamus13.85
Kidney12.1
Leukemia_chronicMyelogenousK-56227.3
Leukemia_promyelocytic-HL-6012.8
Leukemialymphoblastic(MOLT-4)11.2
Liver19.7
Lung19.95
Lymphnode11.1
Lymphoma_burkitts(Daudi)18
Lymphoma_burkitts(Raji)20.1
MedullaOblongata18.1
OccipitalLobe12.6
OlfactoryBulb11.25
Ovary9.7
Pancreas16
PancreaticIslet15.05
ParietalLobe16.7
Pituitary22.15
Placenta14.4
Pons14.1
PrefrontalCortex15.45
Prostate14.7
Salivarygland12.05
SkeletalMuscle36.45
Skin15
SmoothMuscle17.6
Spinalcord14.95
SubthalamicNucleus13.1
SuperiorCervicalGanglion19.15
TemporalLobe21.5
Testis17.55
TestisGermCell16.15
TestisIntersitial19.05
TestisLeydigCell14.1
TestisSeminiferousTubule12.15
Thalamus14.95
Thymus9.45
Thyroid15.05
Tongue19.65
Tonsil15.65
Trachea11.9
TrigeminalGanglion19.15
Uterus12.8
UterusCorpus14.95
WholeBlood14.45
Wholebrain16.05
colon14.3
pineal_day25.54
pineal_night31.54
retina88.2
small_intestine17
Allen Brain Atlas Top
Human Whole Brain Microarrayview in Allen Brain Atlas
  • Probe id     Donor id      
  • Probe name: A_23_P209735
  • Donor H0351.2001
  • Sex: Male     Age: 24 years     Race/Ethnicity: African American     Handedness: Left
  • Tissue Receipt Date: 7/29/2009     Serology: Pass      Tissue pH :6.72     Additional Medical Information :History of asthma
  • Postmortem Interval: 23 hours (estimated time of death to time that tissue is frozen)
  • Toxicology: Positive for atropine and caffeine, at levels usually not toxicologically significant
Tissue Expression(mean ± stddev) Expression Bar
Amygdala5.61 ± 0.67
Basal Forebrain5.74 ± 0.13
Basal Part of Pons6.02 ± 0.44
Cerebellar Cortex5.44 ± 0.29
Cerebellar Nuclei5.16 ± 0.5
Claustrum5.68 ± 0.56
Epithalamus5.9 ± 0.65
Frontal Lobe5.83 ± 0.5
Globus Pallidus4.43 ± 0.7
Hypothalamus5.65 ± 0.5
Insula5.74 ± 0.25
Limbic Lobe5.74 ± 0.59
Mesencephalon5.47 ± 0.46
Myelencephalon5.59 ± 0.61
Occipital Lobe5.61 ± 0.56
Parietal Lobe5.7 ± 0.51
Pontine Tegmentum5.61 ± 0.56
Striatum6.03 ± 0.55
Subthalamus5.37 ± 0.29
Temporal Lobe5.75 ± 0.42
Thalamus5.48 ± 0.52
White Matter3.51 ± 0.67
Mouse Brain ISH
Gene Symbol Brain Structure ID Brain Structure Name Express Desity/Level (Meatured by ISH) Express Bar
Armc9CBCerebellum19.05
22.46
Armc9CTXCerebral cortex68.8
52.6
Armc9HIPHippocampal region53.74
66.66
Armc9HPFHippocampal formation67.59
70.23
Armc9HYHypothalamus49.3
37.76
Armc9LSXLateral septal complex56.05
45.47
Armc9MBMidbrain44.28
37.88
Armc9MYMedulla28.45
35.76
Armc9OLFOlfactory bulb47
41.61
Armc9PPons39.47
41.23
Armc9PALPallidum27.2
23.84
Armc9RHPRetrohippocampal region93.9
77.56
Armc9sAMYStriatum-like amygdalar nuclei82.99
62.09
Armc9STRStriatum34.66
25.49
Armc9STRdStriatum dorsal region28.26
19.74
Armc9STRvStriatum ventral region25.89
19.44
Armc9THThalamus39.78
30.34
Peptide Top

Simple Query:


  (e.g. CHD8)

Syndromic Genes

Non-syndromic Genes

AutismKB Statistics

  • Studies: 1,036
  • Genes: 1,379
  • CNVs/SVs: 5,420
  • SNVs/Indels: 11,669
  • de novo Mutations: 5,669
  • Mosaics: 789
  • Linkage Regions: 172
  • Paper Collected: 6/30/2018
  • Last Update: 8/26/2018


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