AutismKB 2.0

Annotation Detail for CCDC92


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Basic Information Top
Gene Symbol:CCDC92 ( FLJ22471 )
Gene Full Name: coiled-coil domain containing 92
Band: 12q24.31
Quick LinksEntrez ID:80212; OMIM: NA; Uniprot ID:CCD92_HUMAN; ENSEMBL ID: ENSG00000119242; HGNC ID: 29563
Relate to Another Database: SFARIGene; denovo-db
Unigene EST Top
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
embryoid body2 / 7076128
blastocyst0 / 623190 
fetus25 / 56401244
neonate0 / 310970 
infant1 / 2362042
juvenile4 / 5555671
adult93 / 193912147
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
adrenal tumor1 / 1279478
bladder carcinoma1 / 1747557
breast (mammary gland) tumor6 / 9417863
cervical tumor1 / 3436629
chondrosarcoma6 / 8282372
colorectal tumor7 / 11424661
esophageal tumor0 / 172900 
gastrointestinal tumor1 / 1193698
germ cell tumor1 / 2638453
glioma8 / 10688374
head and neck tumor5 / 13630236
kidney tumor4 / 6895958
leukemia7 / 9584273
liver tumor1 / 9635910
lung tumor6 / 10312758
lymphoma3 / 7175541
non-neoplasia5 / 9725051
normal164 / 336030748
ovarian tumor5 / 7668265
pancreatic tumor8 / 10461676
primitive neuroectodermal tumor of the CNS5 / 12568039
prostate cancer2 / 10268019
retinoblastoma1 / 4635621
skin tumor2 / 12494916
soft tissue/muscle tissue tumor2 / 12519115
uterine tumor3 / 9025733
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
adipose tissue1 / 1310676
adrenal gland2 / 3319760
ascites0 / 400150 
bladder0 / 297570 
blood5 / 12347840
bone3 / 7165541
bone marrow0 / 488010 
brain96 / 110098987
cervix1 / 4817120
connective tissue6 / 14925540
ear0 / 162120 
embryonic tissue2 / 2157229
esophagus0 / 202090 
eye10 / 21105447
heart5 / 8962655
intestine10 / 23447242
kidney9 / 21177742
larynx0 / 241450 
liver1 / 2077434
lung17 / 33697450
lymph0 / 442700 
lymph node4 / 9161043
mammary gland6 / 15327139
mouth0 / 670520 
muscle1 / 1077159
nerve1 / 1576863
ovary5 / 10205148
pancreas13 / 21481260
parathyroid1 / 2053948
pharynx1 / 4132824
pituitary gland4 / 16585241
placenta17 / 28082560
prostate7 / 18934536
salivary gland2 / 2015599
skin9 / 21057442
spleen0 / 539520 
stomach1 / 9661910
testis43 / 330442130
thymus0 / 811310 
thyroid1 / 4747321
tonsil0 / 169990 
trachea0 / 524130 
umbilical cord0 / 136800 
uterus7 / 23287830
vascular2 / 5178038
Microarray in BioGPS Top
Select probe  
  • Microarray Platform: GeneAtlas U133A, gcrma
  • Affymatrix Probe ID: 218175_at
Cell line Expression level Expression bar
721_B_lymphoblasts8.3
Adipocyte305.4
AdrenalCortex59.3
Adrenalgland123.4
Amygdala1462.75
Appendix93.05
AtrioventricularNode26.75
BDCA4+_DentriticCells100.35
Bonemarrow79.65
BronchialEpithelialCells86.2
CD105+_Endothelial45.35
CD14+_Monocytes188.2
CD19+_BCells(neg._sel.)262.8
CD33+_Myeloid69.9
CD34+74.4
CD4+_Tcells212.85
CD56+_NKCells353.45
CD71+_EarlyErythroid8.25
CD8+_Tcells178.05
CardiacMyocytes88.9
Caudatenucleus309.05
Cerebellum250.7
CerebellumPeduncles280.6
CiliaryGanglion130.8
CingulateCortex724.95
Colorectaladenocarcinoma134.95
DorsalRootGanglion140.95
FetalThyroid191.75
Fetalbrain193.2
Fetalliver68.95
Fetallung140.35
GlobusPallidus202
Heart473.55
Hypothalamus658.25
Kidney150.2
Leukemia_chronicMyelogenousK-56275.35
Leukemia_promyelocytic-HL-6018.9
Leukemialymphoblastic(MOLT-4)79.25
Liver253.8
Lung464.15
Lymphnode112.75
Lymphoma_burkitts(Daudi)99.6
Lymphoma_burkitts(Raji)139
MedullaOblongata467.45
OccipitalLobe474.8
OlfactoryBulb144
Ovary14.6
Pancreas72.55
PancreaticIslet128.7
ParietalLobe372.55
Pituitary223.25
Placenta183.95
Pons244.25
PrefrontalCortex1752.9
Prostate285.2
Salivarygland48.35
SkeletalMuscle86.85
Skin17.1
SmoothMuscle254.1
Spinalcord427.5
SubthalamicNucleus513.25
SuperiorCervicalGanglion87.65
TemporalLobe444.2
Testis856.25
TestisGermCell633.8
TestisIntersitial485.15
TestisLeydigCell355.6
TestisSeminiferousTubule354.8
Thalamus543.2
Thymus153.25
Thyroid312.3
Tongue67.85
Tonsil63.85
Trachea112.6
TrigeminalGanglion101.4
Uterus245.45
UterusCorpus90.2
WholeBlood230.6
Wholebrain906.8
colon150.25
pineal_day322.64
pineal_night274.68
retina379.7
small_intestine172
Allen Brain Atlas Top
Human Whole Brain Microarrayview in Allen Brain Atlas
  • Probe id     Donor id      
  • Probe name: CUST_110_PI416261804
  • Donor H0351.2001
  • Sex: Male     Age: 24 years     Race/Ethnicity: African American     Handedness: Left
  • Tissue Receipt Date: 7/29/2009     Serology: Pass      Tissue pH :6.72     Additional Medical Information :History of asthma
  • Postmortem Interval: 23 hours (estimated time of death to time that tissue is frozen)
  • Toxicology: Positive for atropine and caffeine, at levels usually not toxicologically significant
Tissue Expression(mean ± stddev) Expression Bar
Amygdala7.09 ± 0.52
Basal Forebrain6.67 ± 0.1
Basal Part of Pons7.34 ± 0.27
Cerebellar Cortex6.5 ± 0.32
Cerebellar Nuclei7.25 ± 0.41
Claustrum6.91 ± 0.94
Epithalamus6.17 ± 0.39
Frontal Lobe6.98 ± 0.49
Globus Pallidus6.56 ± 0.44
Hypothalamus6.8 ± 0.39
Insula6.72 ± 0.23
Limbic Lobe7.18 ± 0.44
Mesencephalon6.69 ± 0.47
Myelencephalon6.84 ± 0.52
Occipital Lobe7.18 ± 0.41
Parietal Lobe7.02 ± 0.41
Pontine Tegmentum6.89 ± 0.44
Striatum6.9 ± 0.45
Subthalamus6.8 ± 0.46
Temporal Lobe6.87 ± 0.36
Thalamus6.74 ± 0.39
White Matter6.22 ± 0.39
Mouse Brain ISH
Gene Symbol Brain Structure ID Brain Structure Name Express Desity/Level (Meatured by ISH) Express Bar
Ccdc92CBCerebellum76.91
100
Ccdc92CTXCerebral cortex100
100
Ccdc92HIPHippocampal region80.46
100
Ccdc92HPFHippocampal formation88.34
100
Ccdc92HYHypothalamus73.84
77.31
Ccdc92LSXLateral septal complex92.61
93.46
Ccdc92MBMidbrain79.28
90.99
Ccdc92MYMedulla69.49
93.65
Ccdc92OLFOlfactory bulb79.44
83.98
Ccdc92PPons69.75
91.9
Ccdc92PALPallidum79.98
87.54
Ccdc92RHPRetrohippocampal region93.62
97.4
Ccdc92sAMYStriatum-like amygdalar nuclei78.41
77.36
Ccdc92STRStriatum71.55
69.08
Ccdc92STRdStriatum dorsal region68.44
65.79
Ccdc92STRvStriatum ventral region74.96
71.17
Ccdc92THThalamus91.06
97.32
Peptide Top

Simple Query:


  (e.g. CHD8)

Syndromic Genes

Non-syndromic Genes

AutismKB Statistics

  • Studies: 1,036
  • Genes: 1,379
  • CNVs/SVs: 5,420
  • SNVs/Indels: 11,669
  • de novo Mutations: 5,669
  • Mosaics: 789
  • Linkage Regions: 172
  • Paper Collected: 6/30/2018
  • Last Update: 8/26/2018


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