Annotation Detail for C16orf70
Basic Information Top
| Gene Symbol: | C16orf70 ( C16orf6,FLJ12076,LIN10,lin-10 ) |
|---|---|
| Gene Full Name: | chromosome 16 open reading frame 70 |
| Band: | 16q22.1 |
| Quick Links | Entrez ID:80262; OMIM: NA; Uniprot ID:CP070_HUMAN; ENSEMBL ID: ENSG00000125149; HGNC ID: 29564 |
| Relate to Another Database: | SFARIGene; denovo-db |
- Unigene ID: Hs.513666
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
 | |||
| embryoid body | 1 / 70761 | 14 |  |
| blastocyst | 0 / 62319 | 0 | |
| fetus | 12 / 564012 | 21 | |
| neonate | 0 / 31097 | 0 | |
| infant | 0 / 23620 | 0 | |
| juvenile | 1 / 55556 | 17 | |
| adult | 80 / 1939121 | 41 | |
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
| |||
| adrenal tumor | 0 / 12794 | 0 | |
| bladder carcinoma | 0 / 17475 | 0 | |
| breast (mammary gland) tumor | 0 / 94178 | 0 | |
| cervical tumor | 2 / 34366 | 58 |  |
| chondrosarcoma | 9 / 82823 | 108 | |
| colorectal tumor | 9 / 114246 | 78 | |
| esophageal tumor | 0 / 17290 | 0 | |
| gastrointestinal tumor | 0 / 119369 | 0 | |
| germ cell tumor | 4 / 263845 | 15 | |
| glioma | 9 / 106883 | 84 | |
| head and neck tumor | 1 / 136302 | 7 |  |
| kidney tumor | 0 / 68959 | 0 | |
| leukemia | 0 / 95842 | 0 | |
| liver tumor | 0 / 96359 | 0 | |
| lung tumor | 10 / 103127 | 96 | |
| lymphoma | 0 / 71755 | 0 | |
| non-neoplasia | 6 / 97250 | 61 | |
| normal | 87 / 3360307 | 25 | |
| ovarian tumor | 3 / 76682 | 39 | |
| pancreatic tumor | 3 / 104616 | 28 | |
| primitive neuroectodermal tumor of the CNS | 2 / 125680 | 15 | |
| prostate cancer | 3 / 102680 | 29 | |
| retinoblastoma | 0 / 46356 | 0 | |
| skin tumor | 0 / 124949 | 0 | |
| soft tissue/muscle tissue tumor | 3 / 125191 | 23 | |
| uterine tumor | 3 / 90257 | 33 | |
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
| |||
| adipose tissue | 0 / 13106 | 0 | |
| adrenal gland | 0 / 33197 | 0 | |
| ascites | 0 / 40015 | 0 | |
| bladder | 0 / 29757 | 0 | |
| blood | 0 / 123478 | 0 | |
| bone | 7 / 71655 | 97 | |
| bone marrow | 0 / 48801 | 0 | |
| brain | 17 / 1100989 | 15 | |
| cervix | 2 / 48171 | 41 | |
| connective tissue | 7 / 149255 | 46 | |
| ear | 0 / 16212 | 0 | |
| embryonic tissue | 1 / 215722 | 4 | |
| esophagus | 0 / 20209 | 0 | |
| eye | 14 / 211054 | 66 | |
| heart | 3 / 89626 | 33 | |
| intestine | 11 / 234472 | 46 | |
| kidney | 6 / 211777 | 28 | |
| larynx | 0 / 24145 | 0 | |
| liver | 0 / 207743 | 0 | |
| lung | 19 / 336974 | 56 | |
| lymph | 0 / 44270 | 0 | |
| lymph node | 0 / 91610 | 0 | |
| mammary gland | 0 / 153271 | 0 | |
| mouth | 2 / 67052 | 29 | |
| muscle | 1 / 107715 | 9 | |
| nerve | 2 / 15768 | 126 | |
| ovary | 6 / 102051 | 58 | |
| pancreas | 10 / 214812 | 46 | |
| parathyroid | 1 / 20539 | 48 | |
| pharynx | 0 / 41328 | 0 | |
| pituitary gland | 5 / 16585 | 301 |  |
| placenta | 6 / 280825 | 21 | |
| prostate | 9 / 189345 | 47 | |
| salivary gland | 0 / 20155 | 0 | |
| skin | 5 / 210574 | 23 | |
| spleen | 0 / 53952 | 0 | |
| stomach | 0 / 96619 | 0 | |
| testis | 0 / 330442 | 0 | |
| thymus | 1 / 81131 | 12 | |
| thyroid | 1 / 47473 | 21 | |
| tonsil | 0 / 16999 | 0 | |
| trachea | 0 / 52413 | 0 | |
| umbilical cord | 0 / 13680 | 0 | |
| uterus | 12 / 232878 | 51 | |
| vascular | 0 / 51780 | 0 |
Microarray in - Probe name: A_23_P206382
- Donor H0351.2001
- Sex: Male Age: 24 years Race/Ethnicity: African American Handedness: Left
- Tissue Receipt Date: 7/29/2009 Serology: Pass Tissue pH :6.72 Additional Medical Information :History of asthma
- Postmortem Interval: 23 hours (estimated time of death to time that tissue is frozen)
- Toxicology: Positive for atropine and caffeine, at levels usually not toxicologically significant
| Tissue | Expression(mean ± stddev) | Expression Bar |
|---|---|---|
| Amygdala | 7.71 ± 0.28 | ![](../"images/bar_3.png"){kind=small}   |
| Basal Forebrain | 7.44 ± 0.08 | |
| Basal Part of Pons | 8.02 ± 0.15 | |
| Cerebellar Cortex | 7.69 ± 0.19 | |
| Cerebellar Nuclei | 7.76 ± 0.2 | |
| Claustrum | 7.88 ± 0.29 | |
| Epithalamus | 7.38 ± 0.14 | |
| Frontal Lobe | 7.84 ± 0.24 | |
| Globus Pallidus | 7.51 ± 0.26 | |
| Hypothalamus | 7.41 ± 0.23 | |
| Insula | 7.87 ± 0.27 | |
| Limbic Lobe | 8.08 ± 0.27 | |
| Mesencephalon | 7.67 ± 0.33 | |
| Myelencephalon | 7.75 ± 0.27 | |
| Occipital Lobe | 7.68 ± 0.27 | |
| Parietal Lobe | 7.74 ± 0.28 | |
| Pontine Tegmentum | 7.72 ± 0.31 | |
| Striatum | 7.36 ± 0.39 | |
| Subthalamus | 7.66 ± 0.06 | |
| Temporal Lobe | 7.93 ± 0.28 | |
| Thalamus | 7.6 ± 0.22 | |
| White Matter | 8.66 ± 0.54 | |
Mouse Brain ISH 
| Gene Symbol | Brain Structure ID | Brain Structure Name | Express Desity/Level (Meatured by ISH) | Express Bar |
|---|---|---|---|---|
| D230025D16Rik | CB | Cerebellum | 2.01 | |
| 2.49 | | |||
| D230025D16Rik | CTX | Cerebral cortex | 4.22 | |
| 3.81 | | |||
| D230025D16Rik | HIP | Hippocampal region | 7.02 | |
| 6.36 | | |||
| D230025D16Rik | HPF | Hippocampal formation | 5.03 | |
| 4.57 | | |||
| D230025D16Rik | HY | Hypothalamus | 0.96 | |
| 0.72 | | |||
| D230025D16Rik | LSX | Lateral septal complex | 0.37 | |
| 0.46 | | |||
| D230025D16Rik | MB | Midbrain | 1.25 | |
| 1.59 | | |||
| D230025D16Rik | MY | Medulla | 0.45 | |
| 0.84 | | |||
| D230025D16Rik | OLF | Olfactory bulb | 0.81 | |
| 0.57 | | |||
| D230025D16Rik | P | Pons | 0.94 | |
| 1.38 | | |||
| D230025D16Rik | PAL | Pallidum | 0.62 | |
| 0.61 | | |||
| D230025D16Rik | RHP | Retrohippocampal region | 1.79 | |
| 2.05 | | |||
| D230025D16Rik | sAMY | Striatum-like amygdalar nuclei | 1.72 | |
| 1.13 | | |||
| D230025D16Rik | STR | Striatum | 3.38 | |
| 4.49 | | |||
| D230025D16Rik | STRd | Striatum dorsal region | 5.07 | |
| 7.14 | | |||
| D230025D16Rik | STRv | Striatum ventral region | 0.42 | |
| 0.39 | | |||
| D230025D16Rik | TH | Thalamus | 2.04 | |
| 1.91 | |
| Peptide Name | Peptide Lengh | Peptide Start | Peptide End | Peptide Sequence | Source |
|---|---|---|---|---|---|
| CP070_HUMAN_1 | 10 | 1 | 10 | MLDLEVVPER | PRIDE |