Annotation Detail for HSD3B7
Basic Information Top
Gene Symbol: | HSD3B7 ( PFIC4,SDR11E3 ) |
---|---|
Gene Full Name: | hydroxy-delta-5-steroid dehydrogenase, 3 beta- and steroid delta-isomerase 7 |
Band: | 16p11.2 |
Quick Links | Entrez ID:80270; OMIM: 607764; Uniprot ID:3BHS7_HUMAN; ENSEMBL ID: ENSG00000099377; HGNC ID: 18324 |
Relate to Another Database: | SFARIGene; denovo-db |
- Unigene ID: Hs.460618
Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
---|---|---|---|
embryoid body | 1 / 70761 | 14 | |
blastocyst | 0 / 62319 | 0 | |
fetus | 3 / 564012 | 5 | |
neonate | 0 / 31097 | 0 | |
infant | 0 / 23620 | 0 | |
juvenile | 0 / 55556 | 0 | |
adult | 29 / 1939121 | 14 |
Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
---|---|---|---|
adrenal tumor | 1 / 12794 | 78 | |
bladder carcinoma | 0 / 17475 | 0 | |
breast (mammary gland) tumor | 0 / 94178 | 0 | |
cervical tumor | 1 / 34366 | 29 | |
chondrosarcoma | 1 / 82823 | 12 | |
colorectal tumor | 1 / 114246 | 8 | |
esophageal tumor | 0 / 17290 | 0 | |
gastrointestinal tumor | 3 / 119369 | 25 | |
germ cell tumor | 1 / 263845 | 3 | |
glioma | 4 / 106883 | 37 | |
head and neck tumor | 0 / 136302 | 0 | |
kidney tumor | 5 / 68959 | 72 | |
leukemia | 0 / 95842 | 0 | |
liver tumor | 2 / 96359 | 20 | |
lung tumor | 4 / 103127 | 38 | |
lymphoma | 0 / 71755 | 0 | |
non-neoplasia | 1 / 97250 | 10 | |
normal | 38 / 3360307 | 11 | |
ovarian tumor | 0 / 76682 | 0 | |
pancreatic tumor | 2 / 104616 | 19 | |
primitive neuroectodermal tumor of the CNS | 0 / 125680 | 0 | |
prostate cancer | 5 / 102680 | 48 | |
retinoblastoma | 0 / 46356 | 0 | |
skin tumor | 0 / 124949 | 0 | |
soft tissue/muscle tissue tumor | 0 / 125191 | 0 | |
uterine tumor | 5 / 90257 | 55 |
Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
---|---|---|---|
adipose tissue | 1 / 13106 | 76 | |
adrenal gland | 1 / 33197 | 30 | |
ascites | 2 / 40015 | 49 | |
bladder | 0 / 29757 | 0 | |
blood | 2 / 123478 | 16 | |
bone | 0 / 71655 | 0 | |
bone marrow | 2 / 48801 | 40 | |
brain | 7 / 1100989 | 6 | |
cervix | 3 / 48171 | 62 | |
connective tissue | 3 / 149255 | 20 | |
ear | 0 / 16212 | 0 | |
embryonic tissue | 2 / 215722 | 9 | |
esophagus | 0 / 20209 | 0 | |
eye | 3 / 211054 | 14 | |
heart | 1 / 89626 | 11 | |
intestine | 3 / 234472 | 12 | |
kidney | 11 / 211777 | 51 | |
larynx | 0 / 24145 | 0 | |
liver | 3 / 207743 | 14 | |
lung | 10 / 336974 | 29 | |
lymph | 0 / 44270 | 0 | |
lymph node | 0 / 91610 | 0 | |
mammary gland | 0 / 153271 | 0 | |
mouth | 0 / 67052 | 0 | |
muscle | 0 / 107715 | 0 | |
nerve | 0 / 15768 | 0 | |
ovary | 0 / 102051 | 0 | |
pancreas | 4 / 214812 | 18 | |
parathyroid | 0 / 20539 | 0 | |
pharynx | 0 / 41328 | 0 | |
pituitary gland | 1 / 16585 | 60 | |
placenta | 5 / 280825 | 17 | |
prostate | 5 / 189345 | 26 | |
salivary gland | 0 / 20155 | 0 | |
skin | 1 / 210574 | 4 | |
spleen | 0 / 53952 | 0 | |
stomach | 3 / 96619 | 31 | |
testis | 2 / 330442 | 6 | |
thymus | 0 / 81131 | 0 | |
thyroid | 0 / 47473 | 0 | |
tonsil | 0 / 16999 | 0 | |
trachea | 0 / 52413 | 0 | |
umbilical cord | 0 / 13680 | 0 | |
uterus | 7 / 232878 | 30 | |
vascular | 0 / 51780 | 0 |
Human Whole Brain Microarrayview in Allen Brain Atlas
- Probe name: A_23_P206819
- Donor H0351.2001
- Sex: Male Age: 24 years Race/Ethnicity: African American Handedness: Left
- Tissue Receipt Date: 7/29/2009 Serology: Pass Tissue pH :6.72 Additional Medical Information :History of asthma
- Postmortem Interval: 23 hours (estimated time of death to time that tissue is frozen)
- Toxicology: Positive for atropine and caffeine, at levels usually not toxicologically significant
Tissue | Expression(mean ± stddev) | Expression Bar |
---|---|---|
Amygdala | 2.41 ± 1 | |
Basal Forebrain | 1.98 ± 0.26 | |
Basal Part of Pons | 1.6 ± 0.38 | |
Cerebellar Cortex | 1.99 ± 0.72 | |
Cerebellar Nuclei | 2.26 ± 0.72 | |
Claustrum | 2.85 ± 0.85 | |
Epithalamus | 1.66 ± 0.81 | |
Frontal Lobe | 1.88 ± 0.68 | |
Globus Pallidus | 2.42 ± 0.45 | |
Hypothalamus | 2.05 ± 0.61 | |
Insula | 1.83 ± 0.54 | |
Limbic Lobe | 1.9 ± 0.66 | |
Mesencephalon | 2.13 ± 0.73 | |
Myelencephalon | 2 ± 0.68 | |
Occipital Lobe | 1.97 ± 0.61 | |
Parietal Lobe | 2 ± 0.79 | |
Pontine Tegmentum | 2.03 ± 0.72 | |
Striatum | 1.93 ± 0.6 | |
Subthalamus | 2.25 ± 0.58 | |
Temporal Lobe | 1.9 ± 0.72 | |
Thalamus | 1.95 ± 0.63 | |
White Matter | 2.25 ± 0.11 |
Gene Symbol | Brain Structure ID | Brain Structure Name | Express Desity/Level (Meatured by ISH) | Express Bar |
---|---|---|---|---|
Hsd3b7 | CB | Cerebellum | 1.85 | |
2.19 | ||||
Hsd3b7 | CTX | Cerebral cortex | 2.59 | |
2.02 | ||||
Hsd3b7 | HIP | Hippocampal region | 6.46 | |
6.98 | ||||
Hsd3b7 | HPF | Hippocampal formation | 6.07 | |
5.99 | ||||
Hsd3b7 | HY | Hypothalamus | 2.79 | |
2.78 | ||||
Hsd3b7 | LSX | Lateral septal complex | 1.32 | |
1.03 | ||||
Hsd3b7 | MB | Midbrain | 1.33 | |
1.76 | ||||
Hsd3b7 | MY | Medulla | 1.24 | |
2.42 | ||||
Hsd3b7 | OLF | Olfactory bulb | 13.58 | |
12.62 | ||||
Hsd3b7 | P | Pons | 3.44 | |
4.29 | ||||
Hsd3b7 | PAL | Pallidum | 3.28 | |
2.88 | ||||
Hsd3b7 | RHP | Retrohippocampal region | 5.4 | |
4.56 | ||||
Hsd3b7 | sAMY | Striatum-like amygdalar nuclei | 5.48 | |
3.92 | ||||
Hsd3b7 | STR | Striatum | 2.62 | |
2.05 | ||||
Hsd3b7 | STRd | Striatum dorsal region | 0.42 | |
0.37 | ||||
Hsd3b7 | STRv | Striatum ventral region | 9.83 | |
6.97 | ||||
Hsd3b7 | TH | Thalamus | 2.82 | |
2.54 |
Peptide Name | Peptide Lengh | Peptide Start | Peptide End | Peptide Sequence | Source |
---|---|---|---|---|---|
PAp00040526 | 19 | 145 | 163 | GNEDTPYEAVHRHPYPCSK | Peptide Atlas |