AutismKB 2.0

Annotation Detail for TRABD


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Basic Information Top
Gene Symbol:TRABD ( LP6054,MGC110928,PP2447 )
Gene Full Name: TraB domain containing
Band: 22q13.33
Quick LinksEntrez ID:80305; OMIM: NA; Uniprot ID:TRABD_HUMAN; ENSEMBL ID: ENSG00000170638; HGNC ID: 28805
Relate to Another Database: SFARIGene; denovo-db
Unigene EST Top
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
embryoid body3 / 7076142
blastocyst4 / 6231964
fetus10 / 56401217
neonate0 / 310970 
infant0 / 236200 
juvenile16 / 55556287
adult106 / 193912154
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
adrenal tumor1 / 1279478
bladder carcinoma1 / 1747557
breast (mammary gland) tumor6 / 9417863
cervical tumor0 / 343660 
chondrosarcoma6 / 8282372
colorectal tumor2 / 11424617
esophageal tumor0 / 172900 
gastrointestinal tumor15 / 119369125
germ cell tumor15 / 26384556
glioma17 / 106883159
head and neck tumor5 / 13630236
kidney tumor0 / 689590 
leukemia9 / 9584293
liver tumor0 / 963590 
lung tumor12 / 103127116
lymphoma42 / 71755585
non-neoplasia0 / 972500 
normal118 / 336030735
ovarian tumor4 / 7668252
pancreatic tumor1 / 1046169
primitive neuroectodermal tumor of the CNS30 / 125680238
prostate cancer4 / 10268038
retinoblastoma2 / 4635643
skin tumor3 / 12494924
soft tissue/muscle tissue tumor14 / 125191111
uterine tumor4 / 9025744
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
adipose tissue0 / 131060 
adrenal gland1 / 3319730
ascites4 / 4001599
bladder0 / 297570 
blood10 / 12347880
bone5 / 7165569
bone marrow3 / 4880161
brain39 / 110098935
cervix2 / 4817141
connective tissue3 / 14925520
ear0 / 162120 
embryonic tissue10 / 21572246
esophagus0 / 202090 
eye6 / 21105428
heart5 / 8962655
intestine9 / 23447238
kidney4 / 21177718
larynx0 / 241450 
liver4 / 20774319
lung22 / 33697465
lymph11 / 44270248
lymph node16 / 91610174
mammary gland7 / 15327145
mouth0 / 670520 
muscle10 / 10771592
nerve1 / 1576863
ovary10 / 10205197
pancreas6 / 21481227
parathyroid0 / 205390 
pharynx0 / 413280 
pituitary gland1 / 1658560
placenta18 / 28082564
prostate7 / 18934536
salivary gland3 / 20155148
skin3 / 21057414
spleen1 / 5395218
stomach12 / 96619124
testis2 / 3304426
thymus0 / 811310 
thyroid2 / 4747342
tonsil2 / 16999117
trachea0 / 524130 
umbilical cord0 / 136800 
uterus11 / 23287847
vascular0 / 517800 
Microarray in BioGPS Top
Select probe  
  • Microarray Platform: GeneAtlas U133A, gcrma
  • Affymatrix Probe ID: 221807_s_at
Cell line Expression level Expression bar
721_B_lymphoblasts14.25
Adipocyte2.6
AdrenalCortex2.65
Adrenalgland2.15
Amygdala2.8
Appendix2.55
AtrioventricularNode1.95
BDCA4+_DentriticCells41.05
Bonemarrow2.55
BronchialEpithelialCells3.6
CD105+_Endothelial2.65
CD14+_Monocytes7.55
CD19+_BCells(neg._sel.)2.85
CD33+_Myeloid8.1
CD34+4.8
CD4+_Tcells10.95
CD56+_NKCells6.9
CD71+_EarlyErythroid2.45
CD8+_Tcells6.25
CardiacMyocytes3.25
Caudatenucleus2.3
Cerebellum2.15
CerebellumPeduncles2.95
CiliaryGanglion1.8
CingulateCortex2.65
Colorectaladenocarcinoma2.65
DorsalRootGanglion1.95
FetalThyroid2.55
Fetalbrain2.65
Fetalliver2.2
Fetallung2.2
GlobusPallidus1.85
Heart3.25
Hypothalamus2.9
Kidney2.1
Leukemia_chronicMyelogenousK-5622.35
Leukemia_promyelocytic-HL-602.3
Leukemialymphoblastic(MOLT-4)2.15
Liver3.35
Lung2.9
Lymphnode2.25
Lymphoma_burkitts(Daudi)3.3
Lymphoma_burkitts(Raji)10.8
MedullaOblongata2.4
OccipitalLobe2.35
OlfactoryBulb2.05
Ovary1.7
Pancreas2.1
PancreaticIslet2.8
ParietalLobe2.7
Pituitary3.05
Placenta2.75
Pons2.45
PrefrontalCortex3.3
Prostate3.1
Salivarygland2.1
SkeletalMuscle2.95
Skin1.95
SmoothMuscle2.95
Spinalcord2.8
SubthalamicNucleus2.35
SuperiorCervicalGanglion2.9
TemporalLobe2.35
Testis2.3
TestisGermCell2.25
TestisIntersitial2.2
TestisLeydigCell2.6
TestisSeminiferousTubule2.25
Thalamus2.65
Thymus2.1
Thyroid3.35
Tongue2.55
Tonsil2.5
Trachea2.2
TrigeminalGanglion2.5
Uterus2.15
UterusCorpus2.3
WholeBlood3.2
Wholebrain2.3
colon2.6
pineal_day3.28
pineal_night3.2
retina3.2
small_intestine2.55
Allen Brain Atlas Top
Human Whole Brain Microarrayview in Allen Brain Atlas
  • Probe id     Donor id      
  • Probe name: A_23_P166548
  • Donor H0351.2001
  • Sex: Male     Age: 24 years     Race/Ethnicity: African American     Handedness: Left
  • Tissue Receipt Date: 7/29/2009     Serology: Pass      Tissue pH :6.72     Additional Medical Information :History of asthma
  • Postmortem Interval: 23 hours (estimated time of death to time that tissue is frozen)
  • Toxicology: Positive for atropine and caffeine, at levels usually not toxicologically significant
Tissue Expression(mean ± stddev) Expression Bar
Amygdala7.46 ± 0.8
Basal Forebrain7.31 ± 0.28
Basal Part of Pons7.24 ± 0.56
Cerebellar Cortex6.9 ± 0.47
Cerebellar Nuclei7.5 ± 0.46
Claustrum7.81 ± 0.64
Epithalamus6.69 ± 0.23
Frontal Lobe7.28 ± 0.59
Globus Pallidus7.54 ± 0.23
Hypothalamus7.41 ± 0.52
Insula7.16 ± 0.62
Limbic Lobe7.27 ± 0.56
Mesencephalon7.49 ± 0.51
Myelencephalon7.28 ± 0.57
Occipital Lobe7.17 ± 0.64
Parietal Lobe7.2 ± 0.45
Pontine Tegmentum7.13 ± 0.39
Striatum7.42 ± 0.59
Subthalamus7.33 ± 0.26
Temporal Lobe7.2 ± 0.6
Thalamus7.32 ± 0.46
White Matter7.51 ± 0.72
Mouse Brain ISH
Peptide Top
Peptide Name Peptide Lengh Peptide Start Peptide End Peptide Sequence Source
PAp00002430 13 186 198 FHLGDRPIPVTFK Peptide Atlas

Simple Query:


  (e.g. CHD8)

Syndromic Genes

Non-syndromic Genes

AutismKB Statistics

  • Studies: 1,036
  • Genes: 1,379
  • CNVs/SVs: 5,420
  • SNVs/Indels: 11,669
  • de novo Mutations: 5,669
  • Mosaics: 789
  • Linkage Regions: 172
  • Paper Collected: 6/30/2018
  • Last Update: 8/26/2018


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