Annotation Detail for TET1
Basic Information Top
| Gene Symbol: | TET1 ( CXXC6,FLJ10839,FLJ41442,KIAA1676,LCX,bA119F7.1 ) |
|---|---|
| Gene Full Name: | tet oncogene 1 |
| Band: | 10q21.3 |
| Quick Links | Entrez ID:80312; OMIM: 607790; Uniprot ID:TET1_HUMAN; ENSEMBL ID: ENSG00000138336; HGNC ID: 29484 |
| Relate to Another Database: | SFARIGene; denovo-db |
- Unigene ID: Hs.567594
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
 | |||
| embryoid body | 2 / 70761 | 28 |  |
| blastocyst | 6 / 62319 | 96 |  |
| fetus | 7 / 564012 | 12 | |
| neonate | 0 / 31097 | 0 | |
| infant | 0 / 23620 | 0 | |
| juvenile | 0 / 55556 | 0 | |
| adult | 8 / 1939121 | 4 |  |
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
| |||
| adrenal tumor | 1 / 12794 | 78 | |
| bladder carcinoma | 0 / 17475 | 0 | |
| breast (mammary gland) tumor | 0 / 94178 | 0 | |
| cervical tumor | 0 / 34366 | 0 | |
| chondrosarcoma | 1 / 82823 | 12 | |
| colorectal tumor | 0 / 114246 | 0 | |
| esophageal tumor | 0 / 17290 | 0 | |
| gastrointestinal tumor | 0 / 119369 | 0 | |
| germ cell tumor | 16 / 263845 | 60 | |
| glioma | 0 / 106883 | 0 | |
| head and neck tumor | 1 / 136302 | 7 | |
| kidney tumor | 0 / 68959 | 0 | |
| leukemia | 1 / 95842 | 10 | |
| liver tumor | 0 / 96359 | 0 | |
| lung tumor | 0 / 103127 | 0 | |
| lymphoma | 0 / 71755 | 0 | |
| non-neoplasia | 0 / 97250 | 0 | |
| normal | 21 / 3360307 | 6 | |
| ovarian tumor | 2 / 76682 | 26 | |
| pancreatic tumor | 0 / 104616 | 0 | |
| primitive neuroectodermal tumor of the CNS | 1 / 125680 | 7 | |
| prostate cancer | 2 / 102680 | 19 | |
| retinoblastoma | 1 / 46356 | 21 | |
| skin tumor | 0 / 124949 | 0 | |
| soft tissue/muscle tissue tumor | 2 / 125191 | 15 | |
| uterine tumor | 1 / 90257 | 11 | |
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
| |||
| adipose tissue | 0 / 13106 | 0 | |
| adrenal gland | 1 / 33197 | 30 | |
| ascites | 0 / 40015 | 0 | |
| bladder | 0 / 29757 | 0 | |
| blood | 0 / 123478 | 0 | |
| bone | 2 / 71655 | 27 | |
| bone marrow | 0 / 48801 | 0 | |
| brain | 3 / 1100989 | 2 | |
| cervix | 0 / 48171 | 0 | |
| connective tissue | 0 / 149255 | 0 | |
| ear | 0 / 16212 | 0 | |
| embryonic tissue | 10 / 215722 | 46 | |
| esophagus | 0 / 20209 | 0 | |
| eye | 2 / 211054 | 9 | |
| heart | 3 / 89626 | 33 | |
| intestine | 0 / 234472 | 0 | |
| kidney | 1 / 211777 | 4 | |
| larynx | 1 / 24145 | 41 | |
| liver | 0 / 207743 | 0 | |
| lung | 2 / 336974 | 5 | |
| lymph | 0 / 44270 | 0 | |
| lymph node | 1 / 91610 | 10 | |
| mammary gland | 0 / 153271 | 0 | |
| mouth | 0 / 67052 | 0 | |
| muscle | 0 / 107715 | 0 | |
| nerve | 0 / 15768 | 0 | |
| ovary | 2 / 102051 | 19 | |
| pancreas | 0 / 214812 | 0 | |
| parathyroid | 0 / 20539 | 0 | |
| pharynx | 0 / 41328 | 0 | |
| pituitary gland | 0 / 16585 | 0 | |
| placenta | 0 / 280825 | 0 | |
| prostate | 2 / 189345 | 10 | |
| salivary gland | 0 / 20155 | 0 | |
| skin | 0 / 210574 | 0 | |
| spleen | 0 / 53952 | 0 | |
| stomach | 0 / 96619 | 0 | |
| testis | 2 / 330442 | 6 | |
| thymus | 2 / 81131 | 24 | |
| thyroid | 0 / 47473 | 0 | |
| tonsil | 0 / 16999 | 0 | |
| trachea | 0 / 52413 | 0 | |
| umbilical cord | 0 / 13680 | 0 | |
| uterus | 3 / 232878 | 12 | |
| vascular | 0 / 51780 | 0 |
Microarray in - Probe name: A_23_P322756
- Donor H0351.2001
- Sex: Male Age: 24 years Race/Ethnicity: African American Handedness: Left
- Tissue Receipt Date: 7/29/2009 Serology: Pass Tissue pH :6.72 Additional Medical Information :History of asthma
- Postmortem Interval: 23 hours (estimated time of death to time that tissue is frozen)
- Toxicology: Positive for atropine and caffeine, at levels usually not toxicologically significant
| Tissue | Expression(mean ± stddev) | Expression Bar |
|---|---|---|
| Amygdala | 3.94 ± 0.69 | ![](../"images/bar_3.png"){kind=small}   |
| Basal Forebrain | 4.43 ± 0.29 | |
| Basal Part of Pons | 3.66 ± 0.62 | |
| Cerebellar Cortex | 4.61 ± 0.34 | |
| Cerebellar Nuclei | 3.81 ± 0.62 | |
| Claustrum | 4.05 ± 0.66 | |
| Epithalamus | 4.57 ± 0.4 | |
| Frontal Lobe | 3.71 ± 0.75 | |
| Globus Pallidus | 3.92 ± 0.94 | |
| Hypothalamus | 4.29 ± 0.57 | |
| Insula | 3.9 ± 0.48 | |
| Limbic Lobe | 3.62 ± 0.66 | |
| Mesencephalon | 4.14 ± 0.76 | |
| Myelencephalon | 3.95 ± 0.71 | |
| Occipital Lobe | 4.46 ± 0.57 | |
| Parietal Lobe | 4.05 ± 0.68 | |
| Pontine Tegmentum | 4.07 ± 0.69 | |
| Striatum | 3.94 ± 0.71 | |
| Subthalamus | 3.88 ± 0.33 | |
| Temporal Lobe | 3.73 ± 0.71 | |
| Thalamus | 4.19 ± 0.64 | |
| White Matter | 5.05 ± 0.17 | |
Mouse Brain ISH 
| Gene Symbol | Brain Structure ID | Brain Structure Name | Express Desity/Level (Meatured by ISH) | Express Bar |
|---|---|---|---|---|
| Cxxc6 | CB | Cerebellum | 30.59 | |
| 49.38 | | |||
| Cxxc6 | CTX | Cerebral cortex | 100 | |
| 97.59 | | |||
| Cxxc6 | HIP | Hippocampal region | 91.28 | |
| 100 | | |||
| Cxxc6 | HPF | Hippocampal formation | 100 | |
| 100 | | |||
| Cxxc6 | HY | Hypothalamus | 16.08 | |
| 11.28 | | |||
| Cxxc6 | LSX | Lateral septal complex | 81.29 | |
| 53.85 | | |||
| Cxxc6 | MB | Midbrain | 22.12 | |
| 17.54 | | |||
| Cxxc6 | MY | Medulla | 22.82 | |
| 21.24 | | |||
| Cxxc6 | OLF | Olfactory bulb | 100 | |
| 100 | | |||
| Cxxc6 | P | Pons | 18.53 | |
| 16.15 | | |||
| Cxxc6 | PAL | Pallidum | 43.75 | |
| 36.02 | | |||
| Cxxc6 | RHP | Retrohippocampal region | 100 | |
| 94.95 | | |||
| Cxxc6 | sAMY | Striatum-like amygdalar nuclei | 92.96 | |
| 66.12 | | |||
| Cxxc6 | STR | Striatum | 100 | |
| 86.56 | | |||
| Cxxc6 | STRd | Striatum dorsal region | 100 | |
| 94.99 | | |||
| Cxxc6 | STRv | Striatum ventral region | 100 | |
| 87.09 | | |||
| Cxxc6 | TH | Thalamus | 11.49 | |
| 10.56 | |