Annotation Detail for LRRC27
Basic Information Top
| Gene Symbol: | LRRC27 ( - ) |
|---|---|
| Gene Full Name: | leucine rich repeat containing 27 |
| Band: | 10q26.3 |
| Quick Links | Entrez ID:80313; OMIM: NA; Uniprot ID:LRC27_HUMAN; ENSEMBL ID: ENSG00000148814; HGNC ID: 29346 |
| Relate to Another Database: | SFARIGene; denovo-db |
- Unigene ID: Hs.119897
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
 | |||
| embryoid body | 2 / 70761 | 28 |  |
| blastocyst | 0 / 62319 | 0 | |
| fetus | 14 / 564012 | 24 | |
| neonate | 0 / 31097 | 0 | |
| infant | 0 / 23620 | 0 | |
| juvenile | 1 / 55556 | 17 | |
| adult | 32 / 1939121 | 16 | |
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
| |||
| adrenal tumor | 0 / 12794 | 0 | |
| bladder carcinoma | 0 / 17475 | 0 | |
| breast (mammary gland) tumor | 6 / 94178 | 63 |  |
| cervical tumor | 0 / 34366 | 0 | |
| chondrosarcoma | 2 / 82823 | 24 | |
| colorectal tumor | 2 / 114246 | 17 | |
| esophageal tumor | 0 / 17290 | 0 | |
| gastrointestinal tumor | 2 / 119369 | 16 | |
| germ cell tumor | 6 / 263845 | 22 | |
| glioma | 1 / 106883 | 9 |  |
| head and neck tumor | 3 / 136302 | 22 | |
| kidney tumor | 0 / 68959 | 0 | |
| leukemia | 1 / 95842 | 10 | |
| liver tumor | 2 / 96359 | 20 | |
| lung tumor | 1 / 103127 | 9 | |
| lymphoma | 0 / 71755 | 0 | |
| non-neoplasia | 1 / 97250 | 10 | |
| normal | 112 / 3360307 | 33 | |
| ovarian tumor | 1 / 76682 | 13 | |
| pancreatic tumor | 1 / 104616 | 9 | |
| primitive neuroectodermal tumor of the CNS | 5 / 125680 | 39 | |
| prostate cancer | 1 / 102680 | 9 | |
| retinoblastoma | 0 / 46356 | 0 | |
| skin tumor | 0 / 124949 | 0 | |
| soft tissue/muscle tissue tumor | 0 / 125191 | 0 | |
| uterine tumor | 1 / 90257 | 11 | |
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
| |||
| adipose tissue | 0 / 13106 | 0 | |
| adrenal gland | 0 / 33197 | 0 | |
| ascites | 0 / 40015 | 0 | |
| bladder | 0 / 29757 | 0 | |
| blood | 1 / 123478 | 8 | |
| bone | 1 / 71655 | 13 | |
| bone marrow | 0 / 48801 | 0 | |
| brain | 41 / 1100989 | 37 | |
| cervix | 2 / 48171 | 41 | |
| connective tissue | 2 / 149255 | 13 | |
| ear | 0 / 16212 | 0 | |
| embryonic tissue | 2 / 215722 | 9 | |
| esophagus | 0 / 20209 | 0 | |
| eye | 7 / 211054 | 33 | |
| heart | 0 / 89626 | 0 | |
| intestine | 2 / 234472 | 8 | |
| kidney | 5 / 211777 | 23 | |
| larynx | 0 / 24145 | 0 | |
| liver | 2 / 207743 | 9 | |
| lung | 6 / 336974 | 17 | |
| lymph | 0 / 44270 | 0 | |
| lymph node | 0 / 91610 | 0 | |
| mammary gland | 6 / 153271 | 39 | |
| mouth | 2 / 67052 | 29 | |
| muscle | 0 / 107715 | 0 | |
| nerve | 0 / 15768 | 0 | |
| ovary | 2 / 102051 | 19 | |
| pancreas | 1 / 214812 | 4 | |
| parathyroid | 0 / 20539 | 0 | |
| pharynx | 0 / 41328 | 0 | |
| pituitary gland | 0 / 16585 | 0 | |
| placenta | 2 / 280825 | 7 | |
| prostate | 1 / 189345 | 5 | |
| salivary gland | 1 / 20155 | 49 | |
| skin | 0 / 210574 | 0 | |
| spleen | 2 / 53952 | 37 | |
| stomach | 3 / 96619 | 31 | |
| testis | 52 / 330442 | 157 | |
| thymus | 4 / 81131 | 49 | |
| thyroid | 0 / 47473 | 0 | |
| tonsil | 0 / 16999 | 0 | |
| trachea | 0 / 52413 | 0 | |
| umbilical cord | 0 / 13680 | 0 | |
| uterus | 2 / 232878 | 8 | |
| vascular | 0 / 51780 | 0 |
Microarray in - Probe name: CUST_910_PI416573500
- Donor H0351.2001
- Sex: Male Age: 24 years Race/Ethnicity: African American Handedness: Left
- Tissue Receipt Date: 7/29/2009 Serology: Pass Tissue pH :6.72 Additional Medical Information :History of asthma
- Postmortem Interval: 23 hours (estimated time of death to time that tissue is frozen)
- Toxicology: Positive for atropine and caffeine, at levels usually not toxicologically significant
| Tissue | Expression(mean ± stddev) | Expression Bar |
|---|---|---|
| Amygdala | 3.86 ± 0.8 | ![](../"images/bar_3.png"){kind=small}   |
| Basal Forebrain | 3.6 ± 0.33 | |
| Basal Part of Pons | 3.39 ± 0.63 | |
| Cerebellar Cortex | 3.21 ± 0.54 | |
| Cerebellar Nuclei | 3.36 ± 0.58 | |
| Claustrum | 3.94 ± 0.56 | |
| Epithalamus | 4.32 ± 0.96 | |
| Frontal Lobe | 3.65 ± 0.61 | |
| Globus Pallidus | 3.33 ± 0.63 | |
| Hypothalamus | 3.31 ± 0.35 | |
| Insula | 3.79 ± 0.43 | |
| Limbic Lobe | 3.74 ± 0.61 | |
| Mesencephalon | 3.54 ± 0.53 | |
| Myelencephalon | 3.57 ± 0.63 | |
| Occipital Lobe | 3.38 ± 0.59 | |
| Parietal Lobe | 3.58 ± 0.67 | |
| Pontine Tegmentum | 3.64 ± 0.71 | |
| Striatum | 3.79 ± 0.77 | |
| Subthalamus | 3.27 ± 0.61 | |
| Temporal Lobe | 3.67 ± 0.56 | |
| Thalamus | 3.43 ± 0.56 | |
| White Matter | 3.37 ± 1.21 | |
Mouse Brain ISH 
| Gene Symbol | Brain Structure ID | Brain Structure Name | Express Desity/Level (Meatured by ISH) | Express Bar |
|---|---|---|---|---|
| Lrrc27 | CB | Cerebellum | 2.93 | |
| 3.75 | | |||
| Lrrc27 | CTX | Cerebral cortex | 3.35 | |
| 2.41 | | |||
| Lrrc27 | HIP | Hippocampal region | 1.49 | |
| 1.22 | | |||
| Lrrc27 | HPF | Hippocampal formation | 1.57 | |
| 1.22 | | |||
| Lrrc27 | HY | Hypothalamus | 1.85 | |
| 1.24 | | |||
| Lrrc27 | LSX | Lateral septal complex | 0.31 | |
| 0.21 | | |||
| Lrrc27 | MB | Midbrain | 5.19 | |
| 4.63 | | |||
| Lrrc27 | MY | Medulla | 15.89 | |
| 17.13 | | |||
| Lrrc27 | OLF | Olfactory bulb | 5.35 | |
| 3.61 | | |||
| Lrrc27 | P | Pons | 11.41 | |
| 12.55 | | |||
| Lrrc27 | PAL | Pallidum | 2.12 | |
| 1.74 | | |||
| Lrrc27 | RHP | Retrohippocampal region | 1.72 | |
| 1.23 | | |||
| Lrrc27 | sAMY | Striatum-like amygdalar nuclei | 3.81 | |
| 4.15 | | |||
| Lrrc27 | STR | Striatum | 1.14 | |
| 1.03 | | |||
| Lrrc27 | STRd | Striatum dorsal region | 0.48 | |
| 0.34 | | |||
| Lrrc27 | STRv | Striatum ventral region | 1.36 | |
| 0.83 | | |||
| Lrrc27 | TH | Thalamus | 1.98 | |
| 1.43 | |