AutismKB 2.0

Annotation Detail for ZKSCAN3


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Basic Information Top
Gene Symbol:ZKSCAN3 ( FLJ33906,KIAA0426,ZF47,ZFP306,ZNF306,ZNF309,ZSCAN13,Zfp47,dJ874C20.1 )
Gene Full Name: zinc finger with KRAB and SCAN domains 3
Band: 6p22.1
Quick LinksEntrez ID:80317; OMIM: 612791; Uniprot ID:ZKSC3_HUMAN; ENSEMBL ID: ENSG00000189298; HGNC ID: 13853
Relate to Another Database: SFARIGene; denovo-db
Unigene EST Top
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
embryoid body0 / 707610 
blastocyst0 / 623190 
fetus6 / 56401210
neonate0 / 310970 
infant0 / 236200 
juvenile0 / 555560 
adult14 / 19391217
Microarray in BioGPS Top
Select probe  
  • Microarray Platform: GeneAtlas U133A, gcrma
  • Affymatrix Probe ID: 211773_s_at
Cell line Expression level Expression bar
721_B_lymphoblasts10.65
Adipocyte8.9
AdrenalCortex10.5
Adrenalgland13.4
Amygdala9.15
Appendix11.8
AtrioventricularNode8.65
BDCA4+_DentriticCells7.45
Bonemarrow11
BronchialEpithelialCells8.75
CD105+_Endothelial8.25
CD14+_Monocytes9.45
CD19+_BCells(neg._sel.)8.65
CD33+_Myeloid10.65
CD34+10.2
CD4+_Tcells9.3
CD56+_NKCells9.25
CD71+_EarlyErythroid8.55
CD8+_Tcells8.2
CardiacMyocytes13.2
Caudatenucleus8.65
Cerebellum10.3
CerebellumPeduncles10.5
CiliaryGanglion7.2
CingulateCortex12.25
Colorectaladenocarcinoma9
DorsalRootGanglion7.85
FetalThyroid8.85
Fetalbrain9.3
Fetalliver8.75
Fetallung7.3
GlobusPallidus6.85
Heart12.25
Hypothalamus9.6
Kidney10.55
Leukemia_chronicMyelogenousK-5628.7
Leukemia_promyelocytic-HL-608.1
Leukemialymphoblastic(MOLT-4)7.5
Liver12.05
Lung9.3
Lymphnode7.85
Lymphoma_burkitts(Daudi)11.95
Lymphoma_burkitts(Raji)13.2
MedullaOblongata11.05
OccipitalLobe8
OlfactoryBulb7.2
Ovary7.3
Pancreas7.5
PancreaticIslet9.8
ParietalLobe10.05
Pituitary12.8
Placenta9.3
Pons9
PrefrontalCortex10.95
Prostate10.35
Salivarygland7.85
SkeletalMuscle15
Skin13.7
SmoothMuscle10.1
Spinalcord9.7
SubthalamicNucleus8.4
SuperiorCervicalGanglion12
TemporalLobe9.85
Testis8
TestisGermCell7.2
TestisIntersitial7.6
TestisLeydigCell9.2
TestisSeminiferousTubule9.1
Thalamus9.25
Thymus7
Thyroid10.95
Tongue11.3
Tonsil8.95
Trachea7.7
TrigeminalGanglion10.3
Uterus7.45
UterusCorpus9.55
WholeBlood9.2
Wholebrain7
colon9.1
pineal_day11.18
pineal_night11.24
retina10.975
small_intestine8.7
Allen Brain Atlas Top
Human Whole Brain Microarrayview in Allen Brain Atlas
  • Probe id     Donor id      
  • Probe name: CUST_11449_PI416261804
  • Donor H0351.2001
  • Sex: Male     Age: 24 years     Race/Ethnicity: African American     Handedness: Left
  • Tissue Receipt Date: 7/29/2009     Serology: Pass      Tissue pH :6.72     Additional Medical Information :History of asthma
  • Postmortem Interval: 23 hours (estimated time of death to time that tissue is frozen)
  • Toxicology: Positive for atropine and caffeine, at levels usually not toxicologically significant
Tissue Expression(mean ± stddev) Expression Bar
Amygdala3.5 ± 0.7
Basal Forebrain3.29 ± 0.61
Basal Part of Pons2.65 ± 0.62
Cerebellar Cortex3.12 ± 0.81
Cerebellar Nuclei3 ± 0.41
Claustrum3.79 ± 0.63
Epithalamus2.91 ± 0.61
Frontal Lobe2.98 ± 0.71
Globus Pallidus3.75 ± 0.68
Hypothalamus2.73 ± 0.44
Insula3.31 ± 0.5
Limbic Lobe3.27 ± 0.72
Mesencephalon3.27 ± 0.76
Myelencephalon3.11 ± 0.73
Occipital Lobe3.43 ± 0.73
Parietal Lobe3.16 ± 0.87
Pontine Tegmentum3.13 ± 0.66
Striatum3.02 ± 0.69
Subthalamus2.77 ± 0.91
Temporal Lobe2.95 ± 0.76
Thalamus2.95 ± 0.71
White Matter3.82 ± 0.22
Mouse Brain ISH
Gene Symbol Brain Structure ID Brain Structure Name Express Desity/Level (Meatured by ISH) Express Bar
Zfp306CBCerebellum14.02
14.14
Zfp306CTXCerebral cortex13.73
8.85
Zfp306HIPHippocampal region13.61
11.32
Zfp306HPFHippocampal formation11.94
9.22
Zfp306HYHypothalamus1.13
0.68
Zfp306LSXLateral septal complex0.56
0.33
Zfp306MBMidbrain3.41
2.96
Zfp306MYMedulla7.59
6.22
Zfp306OLFOlfactory bulb22.13
15.09
Zfp306PPons5.41
4.69
Zfp306PALPallidum2.98
2.1
Zfp306RHPRetrohippocampal region9.28
6.37
Zfp306sAMYStriatum-like amygdalar nuclei6.7
4.26
Zfp306STRStriatum4.56
2.97
Zfp306STRdStriatum dorsal region5.03
3.39
Zfp306STRvStriatum ventral region3.51
2.1
Zfp306THThalamus8.79
6.01
Peptide Top

Simple Query:


  (e.g. CHD8)

Syndromic Genes

Non-syndromic Genes

AutismKB Statistics

  • Studies: 1,036
  • Genes: 1,379
  • CNVs/SVs: 5,420
  • SNVs/Indels: 11,669
  • de novo Mutations: 5,669
  • Mosaics: 789
  • Linkage Regions: 172
  • Paper Collected: 6/30/2018
  • Last Update: 8/26/2018


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