AutismKB 2.0

Annotation Detail for ZKSCAN3


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Basic Information Top
Gene Symbol:ZKSCAN3 ( FLJ33906,KIAA0426,ZF47,ZFP306,ZNF306,ZNF309,ZSCAN13,Zfp47,dJ874C20.1 )
Gene Full Name: zinc finger with KRAB and SCAN domains 3
Band: 6p22.1
Quick LinksEntrez ID:80317; OMIM: 612791; Uniprot ID:ZKSC3_HUMAN; ENSEMBL ID: ENSG00000189298; HGNC ID: 13853
Relate to Another Database: SFARIGene; denovo-db
Unigene EST Top
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
embryoid body0 / 707610 
blastocyst0 / 623190 
fetus6 / 56401210
neonate0 / 310970 
infant0 / 236200 
juvenile0 / 555560 
adult14 / 19391217
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
adrenal tumor0 / 127940 
bladder carcinoma0 / 174750 
breast (mammary gland) tumor1 / 9417810
cervical tumor0 / 343660 
chondrosarcoma0 / 828230 
colorectal tumor1 / 1142468
esophageal tumor0 / 172900 
gastrointestinal tumor1 / 1193698
germ cell tumor4 / 26384515
glioma0 / 1068830 
head and neck tumor2 / 13630214
kidney tumor0 / 689590 
leukemia2 / 9584220
liver tumor0 / 963590 
lung tumor0 / 1031270 
lymphoma0 / 717550 
non-neoplasia0 / 972500 
normal22 / 33603076
ovarian tumor0 / 766820 
pancreatic tumor0 / 1046160 
primitive neuroectodermal tumor of the CNS1 / 1256807
prostate cancer0 / 1026800 
retinoblastoma1 / 4635621
skin tumor0 / 1249490 
soft tissue/muscle tissue tumor0 / 1251910 
uterine tumor0 / 902570 
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
adipose tissue0 / 131060 
adrenal gland0 / 331970 
ascites0 / 400150 
bladder0 / 297570 
blood1 / 1234788
bone0 / 716550 
bone marrow1 / 4880120
brain8 / 11009897
cervix0 / 481710 
connective tissue0 / 1492550 
ear0 / 162120 
embryonic tissue0 / 2157220 
esophagus0 / 202090 
eye1 / 2110544
heart2 / 8962622
intestine3 / 23447212
kidney0 / 2117770 
larynx0 / 241450 
liver0 / 2077430 
lung2 / 3369745
lymph0 / 442700 
lymph node0 / 916100 
mammary gland1 / 1532716
mouth2 / 6705229
muscle0 / 1077150 
nerve0 / 157680 
ovary0 / 1020510 
pancreas0 / 2148120 
parathyroid0 / 205390 
pharynx0 / 413280 
pituitary gland0 / 165850 
placenta2 / 2808257
prostate1 / 1893455
salivary gland0 / 201550 
skin0 / 2105740 
spleen0 / 539520 
stomach1 / 9661910
testis4 / 33044212
thymus2 / 8113124
thyroid0 / 474730 
tonsil0 / 169990 
trachea2 / 5241338
umbilical cord0 / 136800 
uterus1 / 2328784
vascular1 / 5178019
Microarray in BioGPS Top
Select probe  
  • Microarray Platform: GeneAtlas U133A, gcrma
  • Affymatrix Probe ID: 211773_s_at
Cell line Expression level Expression bar
721_B_lymphoblasts10.65
Adipocyte8.9
AdrenalCortex10.5
Adrenalgland13.4
Amygdala9.15
Appendix11.8
AtrioventricularNode8.65
BDCA4+_DentriticCells7.45
Bonemarrow11
BronchialEpithelialCells8.75
CD105+_Endothelial8.25
CD14+_Monocytes9.45
CD19+_BCells(neg._sel.)8.65
CD33+_Myeloid10.65
CD34+10.2
CD4+_Tcells9.3
CD56+_NKCells9.25
CD71+_EarlyErythroid8.55
CD8+_Tcells8.2
CardiacMyocytes13.2
Caudatenucleus8.65
Cerebellum10.3
CerebellumPeduncles10.5
CiliaryGanglion7.2
CingulateCortex12.25
Colorectaladenocarcinoma9
DorsalRootGanglion7.85
FetalThyroid8.85
Fetalbrain9.3
Fetalliver8.75
Fetallung7.3
GlobusPallidus6.85
Heart12.25
Hypothalamus9.6
Kidney10.55
Leukemia_chronicMyelogenousK-5628.7
Leukemia_promyelocytic-HL-608.1
Leukemialymphoblastic(MOLT-4)7.5
Liver12.05
Lung9.3
Lymphnode7.85
Lymphoma_burkitts(Daudi)11.95
Lymphoma_burkitts(Raji)13.2
MedullaOblongata11.05
OccipitalLobe8
OlfactoryBulb7.2
Ovary7.3
Pancreas7.5
PancreaticIslet9.8
ParietalLobe10.05
Pituitary12.8
Placenta9.3
Pons9
PrefrontalCortex10.95
Prostate10.35
Salivarygland7.85
SkeletalMuscle15
Skin13.7
SmoothMuscle10.1
Spinalcord9.7
SubthalamicNucleus8.4
SuperiorCervicalGanglion12
TemporalLobe9.85
Testis8
TestisGermCell7.2
TestisIntersitial7.6
TestisLeydigCell9.2
TestisSeminiferousTubule9.1
Thalamus9.25
Thymus7
Thyroid10.95
Tongue11.3
Tonsil8.95
Trachea7.7
TrigeminalGanglion10.3
Uterus7.45
UterusCorpus9.55
WholeBlood9.2
Wholebrain7
colon9.1
pineal_day11.18
pineal_night11.24
retina10.975
small_intestine8.7
Allen Brain Atlas Top
Human Whole Brain Microarrayview in Allen Brain Atlas
  • Probe id     Donor id      
  • Probe name: CUST_11449_PI416261804
  • Donor H0351.2001
  • Sex: Male     Age: 24 years     Race/Ethnicity: African American     Handedness: Left
  • Tissue Receipt Date: 7/29/2009     Serology: Pass      Tissue pH :6.72     Additional Medical Information :History of asthma
  • Postmortem Interval: 23 hours (estimated time of death to time that tissue is frozen)
  • Toxicology: Positive for atropine and caffeine, at levels usually not toxicologically significant
Tissue Expression(mean ± stddev) Expression Bar
Amygdala3.5 ± 0.7
Basal Forebrain3.29 ± 0.61
Basal Part of Pons2.65 ± 0.62
Cerebellar Cortex3.12 ± 0.81
Cerebellar Nuclei3 ± 0.41
Claustrum3.79 ± 0.63
Epithalamus2.91 ± 0.61
Frontal Lobe2.98 ± 0.71
Globus Pallidus3.75 ± 0.68
Hypothalamus2.73 ± 0.44
Insula3.31 ± 0.5
Limbic Lobe3.27 ± 0.72
Mesencephalon3.27 ± 0.76
Myelencephalon3.11 ± 0.73
Occipital Lobe3.43 ± 0.73
Parietal Lobe3.16 ± 0.87
Pontine Tegmentum3.13 ± 0.66
Striatum3.02 ± 0.69
Subthalamus2.77 ± 0.91
Temporal Lobe2.95 ± 0.76
Thalamus2.95 ± 0.71
White Matter3.82 ± 0.22
Mouse Brain ISH
Gene Symbol Brain Structure ID Brain Structure Name Express Desity/Level (Meatured by ISH) Express Bar
Zfp306CBCerebellum14.02
14.14
Zfp306CTXCerebral cortex13.73
8.85
Zfp306HIPHippocampal region13.61
11.32
Zfp306HPFHippocampal formation11.94
9.22
Zfp306HYHypothalamus1.13
0.68
Zfp306LSXLateral septal complex0.56
0.33
Zfp306MBMidbrain3.41
2.96
Zfp306MYMedulla7.59
6.22
Zfp306OLFOlfactory bulb22.13
15.09
Zfp306PPons5.41
4.69
Zfp306PALPallidum2.98
2.1
Zfp306RHPRetrohippocampal region9.28
6.37
Zfp306sAMYStriatum-like amygdalar nuclei6.7
4.26
Zfp306STRStriatum4.56
2.97
Zfp306STRdStriatum dorsal region5.03
3.39
Zfp306STRvStriatum ventral region3.51
2.1
Zfp306THThalamus8.79
6.01
Peptide Top

Simple Query:


  (e.g. CHD8)

Syndromic Genes

Non-syndromic Genes

AutismKB Statistics

  • Studies: 1,036
  • Genes: 1,379
  • CNVs/SVs: 5,420
  • SNVs/Indels: 11,669
  • de novo Mutations: 5,669
  • Mosaics: 789
  • Linkage Regions: 172
  • Paper Collected: 6/30/2018
  • Last Update: 8/26/2018


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