AutismKB 2.0

Annotation Detail for CCDC68


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Basic Information Top
Gene Symbol:CCDC68 ( FLJ25368,SE57-1 )
Gene Full Name: coiled-coil domain containing 68
Band: 18q21.2
Quick LinksEntrez ID:80323; OMIM: NA; Uniprot ID:CCD68_HUMAN; ENSEMBL ID: ENSG00000166510; HGNC ID: 24350
Relate to Another Database: SFARIGene; denovo-db
Unigene EST Top
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
embryoid body0 / 707610 
blastocyst0 / 623190 
fetus1 / 5640121
neonate0 / 310970 
infant0 / 236200 
juvenile0 / 555560 
adult12 / 19391216
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
adrenal tumor0 / 127940 
bladder carcinoma0 / 174750 
breast (mammary gland) tumor0 / 941780 
cervical tumor1 / 3436629
chondrosarcoma0 / 828230 
colorectal tumor0 / 1142460 
esophageal tumor0 / 172900 
gastrointestinal tumor2 / 11936916
germ cell tumor0 / 2638450 
glioma0 / 1068830 
head and neck tumor0 / 1363020 
kidney tumor0 / 689590 
leukemia0 / 958420 
liver tumor4 / 9635941
lung tumor1 / 1031279
lymphoma0 / 717550 
non-neoplasia1 / 9725010
normal23 / 33603076
ovarian tumor0 / 766820 
pancreatic tumor0 / 1046160 
primitive neuroectodermal tumor of the CNS0 / 1256800 
prostate cancer0 / 1026800 
retinoblastoma0 / 463560 
skin tumor0 / 1249490 
soft tissue/muscle tissue tumor0 / 1251910 
uterine tumor0 / 902570 
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
adipose tissue0 / 131060 
adrenal gland0 / 331970 
ascites1 / 4001524
bladder0 / 297570 
blood0 / 1234780 
bone0 / 716550 
bone marrow0 / 488010 
brain4 / 11009893
cervix1 / 4817120
connective tissue0 / 1492550 
ear0 / 162120 
embryonic tissue0 / 2157220 
esophagus0 / 202090 
eye0 / 2110540 
heart0 / 896260 
intestine1 / 2344724
kidney4 / 21177718
larynx0 / 241450 
liver4 / 20774319
lung3 / 3369748
lymph0 / 442700 
lymph node0 / 916100 
mammary gland0 / 1532710 
mouth0 / 670520 
muscle2 / 10771518
nerve0 / 157680 
ovary0 / 1020510 
pancreas0 / 2148120 
parathyroid0 / 205390 
pharynx0 / 413280 
pituitary gland1 / 1658560
placenta7 / 28082524
prostate1 / 1893455
salivary gland0 / 201550 
skin0 / 2105740 
spleen0 / 539520 
stomach2 / 9661920
testis2 / 3304426
thymus0 / 811310 
thyroid0 / 474730 
tonsil0 / 169990 
trachea2 / 5241338
umbilical cord0 / 136800 
uterus0 / 2328780 
vascular0 / 517800 
Microarray in BioGPS Top
Select probe  
  • Microarray Platform: GeneAtlas U133A, gcrma
  • Affymatrix Probe ID: 220180_at
Cell line Expression level Expression bar
721_B_lymphoblasts5.9
Adipocyte4.6
AdrenalCortex5.7
Adrenalgland4
Amygdala4.8
Appendix5.95
AtrioventricularNode5.55
BDCA4+_DentriticCells5.05
Bonemarrow4.8
BronchialEpithelialCells4.5
CD105+_Endothelial4.7
CD14+_Monocytes5
CD19+_BCells(neg._sel.)5
CD33+_Myeloid6.05
CD34+6
CD4+_Tcells5
CD56+_NKCells5.55
CD71+_EarlyErythroid4.45
CD8+_Tcells4.5
CardiacMyocytes6.45
Caudatenucleus4.2
Cerebellum3.75
CerebellumPeduncles5.75
CiliaryGanglion8.1
CingulateCortex4.8
Colorectaladenocarcinoma4.7
DorsalRootGanglion4.7
FetalThyroid4.65
Fetalbrain4.55
Fetalliver9
Fetallung39.05
GlobusPallidus3.8
Heart7.85
Hypothalamus5
Kidney4.05
Leukemia_chronicMyelogenousK-5624.15
Leukemia_promyelocytic-HL-604.1
Leukemialymphoblastic(MOLT-4)3.55
Liver7.6
Lung5.1
Lymphnode3.95
Lymphoma_burkitts(Daudi)6.05
Lymphoma_burkitts(Raji)7.3
MedullaOblongata4.9
OccipitalLobe4.2
OlfactoryBulb3.6
Ovary3.55
Pancreas3.95
PancreaticIslet5.15
ParietalLobe5.15
Pituitary6.35
Placenta4.7
Pons4.75
PrefrontalCortex5.8
Prostate5.4
Salivarygland3.8
SkeletalMuscle8.75
Skin4.55
SmoothMuscle5.25
Spinalcord4.95
SubthalamicNucleus4.5
SuperiorCervicalGanglion8.65
TemporalLobe4.35
Testis4
TestisGermCell4.4
TestisIntersitial5.75
TestisLeydigCell4.9
TestisSeminiferousTubule4.75
Thalamus4.75
Thymus3.5
Thyroid5.8
Tongue4.85
Tonsil4.55
Trachea3.9
TrigeminalGanglion8.25
Uterus3.9
UterusCorpus8.35
WholeBlood5.05
Wholebrain3.65
colon13.2
pineal_day5.96
pineal_night5.72
retina5.725
small_intestine8.15
Allen Brain Atlas Top
Human Whole Brain Microarrayview in Allen Brain Atlas
  • Probe id     Donor id      
  • Probe name: A_23_P363255
  • Donor H0351.2001
  • Sex: Male     Age: 24 years     Race/Ethnicity: African American     Handedness: Left
  • Tissue Receipt Date: 7/29/2009     Serology: Pass      Tissue pH :6.72     Additional Medical Information :History of asthma
  • Postmortem Interval: 23 hours (estimated time of death to time that tissue is frozen)
  • Toxicology: Positive for atropine and caffeine, at levels usually not toxicologically significant
Tissue Expression(mean ± stddev) Expression Bar
Amygdala2.73 ± 1.19
Basal Forebrain2.17 ± 0.28
Basal Part of Pons2.23 ± 0.85
Cerebellar Cortex1.74 ± 0.43
Cerebellar Nuclei2.83 ± 0.8
Claustrum2.64 ± 0.72
Epithalamus1.72 ± 0.93
Frontal Lobe2.66 ± 0.95
Globus Pallidus2.36 ± 0.79
Hypothalamus2.36 ± 0.91
Insula2.59 ± 1.05
Limbic Lobe2.26 ± 0.89
Mesencephalon2.38 ± 0.84
Myelencephalon2.3 ± 0.8
Occipital Lobe1.75 ± 0.83
Parietal Lobe2.29 ± 0.88
Pontine Tegmentum2.25 ± 0.74
Striatum1.64 ± 0.78
Subthalamus2.42 ± 0.28
Temporal Lobe2.33 ± 0.92
Thalamus2.54 ± 0.75
White Matter1.95 ± 0.19
Mouse Brain ISH
Gene Symbol Brain Structure ID Brain Structure Name Express Desity/Level (Meatured by ISH) Express Bar
Ccdc68CBCerebellum1.9
2.2
Ccdc68CTXCerebral cortex0.87
0.69
Ccdc68HIPHippocampal region1.47
1.44
Ccdc68HPFHippocampal formation1.5
1.46
Ccdc68HYHypothalamus0.92
0.75
Ccdc68LSXLateral septal complex0.07
0
Ccdc68MBMidbrain0.26
0.33
Ccdc68MYMedulla3.18
3.71
Ccdc68OLFOlfactory bulb0.94
0.62
Ccdc68PPons0.55
0.68
Ccdc68PALPallidum0.53
0.4
Ccdc68RHPRetrohippocampal region1.62
1.51
Ccdc68sAMYStriatum-like amygdalar nuclei1.4
1.37
Ccdc68STRStriatum0.49
0.48
Ccdc68STRdStriatum dorsal region0.51
0.5
Ccdc68STRvStriatum ventral region0.14
0.17
Ccdc68THThalamus0.95
0.77
Peptide Top

Simple Query:


  (e.g. CHD8)

Syndromic Genes

Non-syndromic Genes

AutismKB Statistics

  • Studies: 1,036
  • Genes: 1,379
  • CNVs/SVs: 5,420
  • SNVs/Indels: 11,669
  • de novo Mutations: 5,669
  • Mosaics: 789
  • Linkage Regions: 172
  • Paper Collected: 6/30/2018
  • Last Update: 8/26/2018


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