Annotation Detail for KCNIP4
Basic Information Top
| Gene Symbol: | KCNIP4 ( CALP,KCHIP4,MGC44947 ) |
|---|---|
| Gene Full Name: | Kv channel interacting protein 4 |
| Band: | 4p15.31-p15.2 |
| Quick Links | Entrez ID:80333; OMIM: 608182; Uniprot ID:KCIP4_HUMAN; ENSEMBL ID: ENSG00000185774; HGNC ID: 30083 |
| Relate to Another Database: | SFARIGene; denovo-db |
- Unigene ID: Hs.655705
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
 | |||
| embryoid body | 0 / 70761 | 0 | |
| blastocyst | 0 / 62319 | 0 | |
| fetus | 7 / 564012 | 12 |  |
| neonate | 0 / 31097 | 0 | |
| infant | 0 / 23620 | 0 | |
| juvenile | 1 / 55556 | 17 | |
| adult | 21 / 1939121 | 10 |  |
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
| |||
| adrenal tumor | 0 / 12794 | 0 | |
| bladder carcinoma | 0 / 17475 | 0 | |
| breast (mammary gland) tumor | 0 / 94178 | 0 | |
| cervical tumor | 0 / 34366 | 0 | |
| chondrosarcoma | 0 / 82823 | 0 | |
| colorectal tumor | 0 / 114246 | 0 | |
| esophageal tumor | 0 / 17290 | 0 | |
| gastrointestinal tumor | 0 / 119369 | 0 | |
| germ cell tumor | 8 / 263845 | 30 | |
| glioma | 0 / 106883 | 0 | |
| head and neck tumor | 0 / 136302 | 0 | |
| kidney tumor | 4 / 68959 | 58 |  |
| leukemia | 0 / 95842 | 0 | |
| liver tumor | 1 / 96359 | 10 | |
| lung tumor | 0 / 103127 | 0 | |
| lymphoma | 0 / 71755 | 0 | |
| non-neoplasia | 1 / 97250 | 10 | |
| normal | 52 / 3360307 | 15 | |
| ovarian tumor | 0 / 76682 | 0 | |
| pancreatic tumor | 0 / 104616 | 0 | |
| primitive neuroectodermal tumor of the CNS | 0 / 125680 | 0 | |
| prostate cancer | 0 / 102680 | 0 | |
| retinoblastoma | 1 / 46356 | 21 | |
| skin tumor | 0 / 124949 | 0 | |
| soft tissue/muscle tissue tumor | 0 / 125191 | 0 | |
| uterine tumor | 0 / 90257 | 0 |
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
| |||
| adipose tissue | 1 / 13106 | 76 | |
| adrenal gland | 0 / 33197 | 0 | |
| ascites | 0 / 40015 | 0 | |
| bladder | 0 / 29757 | 0 | |
| blood | 0 / 123478 | 0 | |
| bone | 0 / 71655 | 0 | |
| bone marrow | 0 / 48801 | 0 | |
| brain | 40 / 1100989 | 36 | |
| cervix | 0 / 48171 | 0 | |
| connective tissue | 0 / 149255 | 0 | |
| ear | 0 / 16212 | 0 | |
| embryonic tissue | 0 / 215722 | 0 | |
| esophagus | 0 / 20209 | 0 | |
| eye | 3 / 211054 | 14 | |
| heart | 0 / 89626 | 0 | |
| intestine | 0 / 234472 | 0 | |
| kidney | 10 / 211777 | 47 | |
| larynx | 0 / 24145 | 0 | |
| liver | 2 / 207743 | 9 | |
| lung | 0 / 336974 | 0 | |
| lymph | 0 / 44270 | 0 | |
| lymph node | 0 / 91610 | 0 | |
| mammary gland | 0 / 153271 | 0 | |
| mouth | 0 / 67052 | 0 | |
| muscle | 4 / 107715 | 37 | |
| nerve | 1 / 15768 | 63 | |
| ovary | 0 / 102051 | 0 | |
| pancreas | 0 / 214812 | 0 | |
| parathyroid | 1 / 20539 | 48 | |
| pharynx | 0 / 41328 | 0 | |
| pituitary gland | 0 / 16585 | 0 | |
| placenta | 2 / 280825 | 7 | |
| prostate | 0 / 189345 | 0 | |
| salivary gland | 0 / 20155 | 0 | |
| skin | 0 / 210574 | 0 | |
| spleen | 0 / 53952 | 0 | |
| stomach | 0 / 96619 | 0 | |
| testis | 0 / 330442 | 0 | |
| thymus | 0 / 81131 | 0 | |
| thyroid | 0 / 47473 | 0 | |
| tonsil | 0 / 16999 | 0 | |
| trachea | 0 / 52413 | 0 | |
| umbilical cord | 0 / 13680 | 0 | |
| uterus | 0 / 232878 | 0 | |
| vascular | 1 / 51780 | 19 | |
Microarray in - Probe name: A_23_P250784
- Donor H0351.2001
- Sex: Male Age: 24 years Race/Ethnicity: African American Handedness: Left
- Tissue Receipt Date: 7/29/2009 Serology: Pass Tissue pH :6.72 Additional Medical Information :History of asthma
- Postmortem Interval: 23 hours (estimated time of death to time that tissue is frozen)
- Toxicology: Positive for atropine and caffeine, at levels usually not toxicologically significant
| Tissue | Expression(mean ± stddev) | Expression Bar |
|---|---|---|
| Amygdala | 5.97 ± 0.53 | ![](../"images/bar_3.png"){kind=small}   |
| Basal Forebrain | 5.15 ± 0.63 | |
| Basal Part of Pons | 6.52 ± 0.26 | |
| Cerebellar Cortex | 6.26 ± 0.36 | |
| Cerebellar Nuclei | 6.34 ± 0.46 | |
| Claustrum | 6.55 ± 0.46 | |
| Epithalamus | 5.14 ± 1.02 | |
| Frontal Lobe | 6.01 ± 0.56 | |
| Globus Pallidus | 3.85 ± 0.49 | |
| Hypothalamus | 6.55 ± 0.42 | |
| Insula | 6.13 ± 0.28 | |
| Limbic Lobe | 5.84 ± 0.77 | |
| Mesencephalon | 5.65 ± 0.86 | |
| Myelencephalon | 5.82 ± 0.85 | |
| Occipital Lobe | 5.94 ± 0.95 | |
| Parietal Lobe | 6.21 ± 0.51 | |
| Pontine Tegmentum | 6.04 ± 0.71 | |
| Striatum | 4.98 ± 0.74 | |
| Subthalamus | 6.05 ± 0.58 | |
| Temporal Lobe | 6.15 ± 0.43 | |
| Thalamus | 6.23 ± 0.5 | |
| White Matter | 3.55 ± 0.31 | |
Mouse Brain ISH 
| Gene Symbol | Brain Structure ID | Brain Structure Name | Express Desity/Level (Meatured by ISH) | Express Bar |
|---|---|---|---|---|
| Kcnip4 | CB | Cerebellum | 26.84 | |
| 81.95 | | |||
| Kcnip4 | CTX | Cerebral cortex | 31.38 | |
| 24.86 | | |||
| Kcnip4 | HIP | Hippocampal region | 21.51 | |
| 24.98 | | |||
| Kcnip4 | HPF | Hippocampal formation | 21.39 | |
| 22.21 | | |||
| Kcnip4 | HY | Hypothalamus | 17.09 | |
| 16.92 | | |||
| Kcnip4 | LSX | Lateral septal complex | 7.7 | |
| 6.97 | | |||
| Kcnip4 | MB | Midbrain | 20.98 | |
| 22.25 | | |||
| Kcnip4 | MY | Medulla | 17.78 | |
| 25.24 | | |||
| Kcnip4 | OLF | Olfactory bulb | 18.22 | |
| 15.43 | | |||
| Kcnip4 | P | Pons | 21.46 | |
| 25.16 | | |||
| Kcnip4 | PAL | Pallidum | 20.79 | |
| 22.7 | | |||
| Kcnip4 | RHP | Retrohippocampal region | 21.69 | |
| 18.92 | | |||
| Kcnip4 | sAMY | Striatum-like amygdalar nuclei | 6.5 | |
| 5.73 | | |||
| Kcnip4 | STR | Striatum | 7.14 | |
| 6.33 | | |||
| Kcnip4 | STRd | Striatum dorsal region | 5.56 | |
| 5.25 | | |||
| Kcnip4 | STRv | Striatum ventral region | 12.54 | |
| 9.58 | | |||
| Kcnip4 | TH | Thalamus | 61.35 | |
| 64.48 | |