Annotation Detail for PABPC1L
Basic Information Top
| Gene Symbol: | PABPC1L ( C20orf119,FLJ11840,FLJ30809,FLJ42053,PABPC1L1,dJ1069P2.3,ePAB ) |
|---|---|
| Gene Full Name: | poly(A) binding protein, cytoplasmic 1-like |
| Band: | 20q13.12 |
| Quick Links | Entrez ID:80336; OMIM: NA; Uniprot ID:PAP1L_HUMAN; ENSEMBL ID: ENSG00000101104; HGNC ID: 15797 |
| Relate to Another Database: | SFARIGene; denovo-db |
- Unigene ID: Hs.641481
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
 | |||
| embryoid body | 2 / 70761 | 28 |  |
| blastocyst | 2 / 62319 | 32 | |
| fetus | 25 / 564012 | 44 | |
| neonate | 0 / 31097 | 0 | |
| infant | 0 / 23620 | 0 | |
| juvenile | 0 / 55556 | 0 | |
| adult | 99 / 1939121 | 51 |  |
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
| |||
| adrenal tumor | 0 / 12794 | 0 | |
| bladder carcinoma | 1 / 17475 | 57 | |
| breast (mammary gland) tumor | 10 / 94178 | 106 | |
| cervical tumor | 0 / 34366 | 0 | |
| chondrosarcoma | 3 / 82823 | 36 | |
| colorectal tumor | 5 / 114246 | 43 | |
| esophageal tumor | 0 / 17290 | 0 | |
| gastrointestinal tumor | 7 / 119369 | 58 | |
| germ cell tumor | 6 / 263845 | 22 | |
| glioma | 0 / 106883 | 0 | |
| head and neck tumor | 9 / 136302 | 66 | |
| kidney tumor | 5 / 68959 | 72 | |
| leukemia | 2 / 95842 | 20 | |
| liver tumor | 4 / 96359 | 41 | |
| lung tumor | 3 / 103127 | 29 | |
| lymphoma | 1 / 71755 | 13 | |
| non-neoplasia | 1 / 97250 | 10 |  |
| normal | 97 / 3360307 | 28 | |
| ovarian tumor | 5 / 76682 | 65 | |
| pancreatic tumor | 0 / 104616 | 0 | |
| primitive neuroectodermal tumor of the CNS | 0 / 125680 | 0 | |
| prostate cancer | 1 / 102680 | 9 | |
| retinoblastoma | 0 / 46356 | 0 | |
| skin tumor | 0 / 124949 | 0 | |
| soft tissue/muscle tissue tumor | 0 / 125191 | 0 | |
| uterine tumor | 5 / 90257 | 55 | |
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
| |||
| adipose tissue | 0 / 13106 | 0 | |
| adrenal gland | 0 / 33197 | 0 | |
| ascites | 4 / 40015 | 99 | |
| bladder | 0 / 29757 | 0 | |
| blood | 2 / 123478 | 16 | |
| bone | 2 / 71655 | 27 | |
| bone marrow | 0 / 48801 | 0 | |
| brain | 26 / 1100989 | 23 | |
| cervix | 0 / 48171 | 0 | |
| connective tissue | 2 / 149255 | 13 | |
| ear | 0 / 16212 | 0 | |
| embryonic tissue | 10 / 215722 | 46 | |
| esophagus | 0 / 20209 | 0 | |
| eye | 2 / 211054 | 9 | |
| heart | 3 / 89626 | 33 | |
| intestine | 11 / 234472 | 46 | |
| kidney | 6 / 211777 | 28 | |
| larynx | 0 / 24145 | 0 | |
| liver | 8 / 207743 | 38 | |
| lung | 10 / 336974 | 29 | |
| lymph | 0 / 44270 | 0 | |
| lymph node | 10 / 91610 | 109 | |
| mammary gland | 11 / 153271 | 71 | |
| mouth | 1 / 67052 | 14 | |
| muscle | 3 / 107715 | 27 | |
| nerve | 1 / 15768 | 63 | |
| ovary | 9 / 102051 | 88 | |
| pancreas | 3 / 214812 | 13 | |
| parathyroid | 3 / 20539 | 146 | |
| pharynx | 0 / 41328 | 0 | |
| pituitary gland | 1 / 16585 | 60 | |
| placenta | 9 / 280825 | 32 | |
| prostate | 13 / 189345 | 68 | |
| salivary gland | 0 / 20155 | 0 | |
| skin | 1 / 210574 | 4 | |
| spleen | 3 / 53952 | 55 | |
| stomach | 4 / 96619 | 41 | |
| testis | 10 / 330442 | 30 | |
| thymus | 2 / 81131 | 24 | |
| thyroid | 10 / 47473 | 210 |  |
| tonsil | 0 / 16999 | 0 | |
| trachea | 1 / 52413 | 19 | |
| umbilical cord | 0 / 13680 | 0 | |
| uterus | 6 / 232878 | 25 | |
| vascular | 0 / 51780 | 0 |
Microarray in - Probe name: A_24_P92183
- Donor H0351.2001
- Sex: Male Age: 24 years Race/Ethnicity: African American Handedness: Left
- Tissue Receipt Date: 7/29/2009 Serology: Pass Tissue pH :6.72 Additional Medical Information :History of asthma
- Postmortem Interval: 23 hours (estimated time of death to time that tissue is frozen)
- Toxicology: Positive for atropine and caffeine, at levels usually not toxicologically significant
| Tissue | Expression(mean ± stddev) | Expression Bar |
|---|---|---|
| Amygdala | 5.18 ± 0.83 | ![](../"images/bar_3.png"){kind=small}   |
| Basal Forebrain | 5.19 ± 0.31 | |
| Basal Part of Pons | 4.26 ± 0.34 | |
| Cerebellar Cortex | 4.03 ± 0.47 | |
| Cerebellar Nuclei | 3.9 ± 0.32 | |
| Claustrum | 5.14 ± 1 | |
| Epithalamus | 5.54 ± 0.63 | |
| Frontal Lobe | 4.5 ± 0.64 | |
| Globus Pallidus | 5.47 ± 0.66 | |
| Hypothalamus | 5.01 ± 0.59 | |
| Insula | 4.74 ± 0.45 | |
| Limbic Lobe | 4.96 ± 0.64 | |
| Mesencephalon | 4.62 ± 0.76 | |
| Myelencephalon | 4.65 ± 0.73 | |
| Occipital Lobe | 4.69 ± 0.51 | |
| Parietal Lobe | 4.58 ± 0.88 | |
| Pontine Tegmentum | 4.7 ± 0.57 | |
| Striatum | 5.96 ± 0.52 | |
| Subthalamus | 4.18 ± 0.62 | |
| Temporal Lobe | 4.69 ± 0.45 | |
| Thalamus | 4.18 ± 0.59 | |
| White Matter | 5.36 ± 0.38 | |
Mouse Brain ISH 
| Gene Symbol | Brain Structure ID | Brain Structure Name | Express Desity/Level (Meatured by ISH) | Express Bar |
|---|---|---|---|---|
| LOC381404 | CB | Cerebellum | 11.23 | |
| 14.43 | | |||
| LOC381404 | CTX | Cerebral cortex | 12.58 | |
| 10.45 | | |||
| LOC381404 | HIP | Hippocampal region | 7.87 | |
| 8.52 | | |||
| LOC381404 | HPF | Hippocampal formation | 9.45 | |
| 8.73 | | |||
| LOC381404 | HY | Hypothalamus | 1.27 | |
| 1.06 | | |||
| LOC381404 | LSX | Lateral septal complex | 3 | |
| 2.02 | | |||
| LOC381404 | MB | Midbrain | 3.59 | |
| 3.73 | | |||
| LOC381404 | MY | Medulla | 7.48 | |
| 9.02 | | |||
| LOC381404 | OLF | Olfactory bulb | 10.59 | |
| 9.74 | | |||
| LOC381404 | P | Pons | 7.19 | |
| 8 | | |||
| LOC381404 | PAL | Pallidum | 6.94 | |
| 7.73 | | |||
| LOC381404 | RHP | Retrohippocampal region | 12.06 | |
| 9.08 | | |||
| LOC381404 | sAMY | Striatum-like amygdalar nuclei | 4.53 | |
| 4.04 | | |||
| LOC381404 | STR | Striatum | 5.2 | |
| 3.99 | | |||
| LOC381404 | STRd | Striatum dorsal region | 4.83 | |
| 3.74 | | |||
| LOC381404 | STRv | Striatum ventral region | 8.24 | |
| 5.84 | | |||
| LOC381404 | TH | Thalamus | 6.4 | |
| 5.34 | |
| Peptide Name | Peptide Lengh | Peptide Start | Peptide End | Peptide Sequence | Source |
|---|---|---|---|---|---|
| PAp00002795 | 15 | 334 | 348 | GFGFVCFSSPEEATK | Peptide Atlas |