AutismKB 2.0

Annotation Detail for UBXN6


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Basic Information Top
Gene Symbol:UBXN6 ( DKFZp667D109,FLJ00394,UBXD1,UBXDC2 )
Gene Full Name: UBX domain protein 6
Band: 19p13
Quick LinksEntrez ID:80700; OMIM: 611946; Uniprot ID:UBXN6_HUMAN; ENSEMBL ID: ENSG00000167671; HGNC ID: 14928
Relate to Another Database: SFARIGene; denovo-db
Unigene EST Top
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
embryoid body4 / 7076156
blastocyst2 / 6231932
fetus40 / 56401270
neonate0 / 310970 
infant1 / 2362042
juvenile3 / 5555653
adult172 / 193912188
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
adrenal tumor1 / 1279478
bladder carcinoma0 / 174750 
breast (mammary gland) tumor12 / 94178127
cervical tumor5 / 34366145
chondrosarcoma14 / 82823169
colorectal tumor8 / 11424670
esophageal tumor0 / 172900 
gastrointestinal tumor8 / 11936967
germ cell tumor6 / 26384522
glioma26 / 106883243
head and neck tumor17 / 136302124
kidney tumor9 / 68959130
leukemia3 / 9584231
liver tumor1 / 9635910
lung tumor10 / 10312796
lymphoma10 / 71755139
non-neoplasia3 / 9725030
normal194 / 336030757
ovarian tumor8 / 76682104
pancreatic tumor13 / 104616124
primitive neuroectodermal tumor of the CNS11 / 12568087
prostate cancer12 / 102680116
retinoblastoma0 / 463560 
skin tumor17 / 124949136
soft tissue/muscle tissue tumor7 / 12519155
uterine tumor11 / 90257121
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
adipose tissue0 / 131060 
adrenal gland1 / 3319730
ascites3 / 4001574
bladder1 / 2975733
blood6 / 12347848
bone10 / 71655139
bone marrow1 / 4880120
brain56 / 110098950
cervix7 / 48171145
connective tissue4 / 14925526
ear1 / 1621261
embryonic tissue6 / 21572227
esophagus0 / 202090 
eye35 / 211054165
heart14 / 89626156
intestine13 / 23447255
kidney14 / 21177766
larynx1 / 2414541
liver6 / 20774328
lung36 / 336974106
lymph5 / 44270112
lymph node3 / 9161032
mammary gland16 / 153271104
mouth0 / 670520 
muscle7 / 10771564
nerve3 / 15768190
ovary13 / 102051127
pancreas16 / 21481274
parathyroid4 / 20539194
pharynx1 / 4132824
pituitary gland3 / 16585180
placenta5 / 28082517
prostate22 / 189345116
salivary gland9 / 20155446
skin20 / 21057494
spleen2 / 5395237
stomach10 / 96619103
testis7 / 33044221
thymus0 / 811310 
thyroid6 / 47473126
tonsil1 / 1699958
trachea0 / 524130 
umbilical cord0 / 136800 
uterus21 / 23287890
vascular0 / 517800 
Microarray in BioGPS Top
Select probe  
  • Microarray Platform: GeneAtlas U133A, gcrma
  • Affymatrix Probe ID: 220757_s_at
Cell line Expression level Expression bar
721_B_lymphoblasts26.4
Adipocyte58.45
AdrenalCortex68.1
Adrenalgland90.1
Amygdala53.95
Appendix11.9
AtrioventricularNode7
BDCA4+_DentriticCells79.85
Bonemarrow93.75
BronchialEpithelialCells48.2
CD105+_Endothelial74.85
CD14+_Monocytes59.25
CD19+_BCells(neg._sel.)49.35
CD33+_Myeloid49.05
CD34+48.55
CD4+_Tcells31.65
CD56+_NKCells54.6
CD71+_EarlyErythroid252.25
CD8+_Tcells29.2
CardiacMyocytes36
Caudatenucleus40.1
Cerebellum59.05
CerebellumPeduncles81
CiliaryGanglion17.7
CingulateCortex49.95
Colorectaladenocarcinoma35.55
DorsalRootGanglion18.5
FetalThyroid80.1
Fetalbrain42.8
Fetalliver39.4
Fetallung42.7
GlobusPallidus36.3
Heart108.85
Hypothalamus51.25
Kidney47.45
Leukemia_chronicMyelogenousK-56247.4
Leukemia_promyelocytic-HL-6019.25
Leukemialymphoblastic(MOLT-4)29.6
Liver203.75
Lung109.85
Lymphnode25.6
Lymphoma_burkitts(Daudi)21.45
Lymphoma_burkitts(Raji)66.8
MedullaOblongata36.6
OccipitalLobe37
OlfactoryBulb18.55
Ovary17.3
Pancreas34.5
PancreaticIslet57.85
ParietalLobe48.05
Pituitary87.35
Placenta55.75
Pons41.15
PrefrontalCortex77.25
Prostate92.7
Salivarygland9.25
SkeletalMuscle25.75
Skin17.75
SmoothMuscle122.4
Spinalcord25.65
SubthalamicNucleus54.45
SuperiorCervicalGanglion15.85
TemporalLobe102
Testis126.65
TestisGermCell66.65
TestisIntersitial75.85
TestisLeydigCell70.65
TestisSeminiferousTubule59.05
Thalamus34.45
Thymus28.3
Thyroid321.8
Tongue35.5
Tonsil27.8
Trachea25
TrigeminalGanglion26.45
Uterus39.65
UterusCorpus25.55
WholeBlood43.6
Wholebrain103.15
colon16.75
pineal_day72.74
pineal_night74.68
retina56.8
small_intestine15.55
Allen Brain Atlas Top
Human Whole Brain Microarrayview in Allen Brain Atlas
  • Probe id     Donor id      
  • Probe name: A_23_P386905
  • Donor H0351.2001
  • Sex: Male     Age: 24 years     Race/Ethnicity: African American     Handedness: Left
  • Tissue Receipt Date: 7/29/2009     Serology: Pass      Tissue pH :6.72     Additional Medical Information :History of asthma
  • Postmortem Interval: 23 hours (estimated time of death to time that tissue is frozen)
  • Toxicology: Positive for atropine and caffeine, at levels usually not toxicologically significant
Tissue Expression(mean ± stddev) Expression Bar
Amygdala6.51 ± 0.62
Basal Forebrain6.49 ± 0.38
Basal Part of Pons7.14 ± 0.36
Cerebellar Cortex6.85 ± 0.51
Cerebellar Nuclei6.45 ± 0.41
Claustrum6.41 ± 0.61
Epithalamus6.7 ± 0.51
Frontal Lobe6.96 ± 0.45
Globus Pallidus6.11 ± 0.35
Hypothalamus6.67 ± 0.4
Insula6.9 ± 0.37
Limbic Lobe6.82 ± 0.48
Mesencephalon6.61 ± 0.41
Myelencephalon6.68 ± 0.57
Occipital Lobe6.15 ± 0.49
Parietal Lobe6.72 ± 0.48
Pontine Tegmentum6.58 ± 0.46
Striatum6.38 ± 0.45
Subthalamus6.91 ± 0.23
Temporal Lobe6.93 ± 0.42
Thalamus6.51 ± 0.48
White Matter5.76 ± 0.27
Mouse Brain ISH
Peptide Top
Peptide Name Peptide Lengh Peptide Start Peptide End Peptide Sequence Source
PAp00024851 24 110 133 EEGSAHLAVPGVYFTCPLTGATLR Peptide Atlas

Simple Query:


  (e.g. CHD8)

Syndromic Genes

Non-syndromic Genes

AutismKB Statistics

  • Studies: 1,036
  • Genes: 1,379
  • CNVs/SVs: 5,420
  • SNVs/Indels: 11,669
  • de novo Mutations: 5,669
  • Mosaics: 789
  • Linkage Regions: 172
  • Paper Collected: 6/30/2018
  • Last Update: 8/26/2018


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