Annotation Detail for SETD7
Basic Information Top
Gene Symbol: | SETD7 ( FLJ21193,KIAA1717,KMT7,SET7,SET7/9,SET9 ) |
---|---|
Gene Full Name: | SET domain containing (lysine methyltransferase) 7 |
Band: | 4q31.1 |
Quick Links | Entrez ID:80854; OMIM: 606594; Uniprot ID:SETD7_HUMAN; ENSEMBL ID: ENSG00000145391; HGNC ID: 30412 |
Relate to Another Database: | SFARIGene; denovo-db |
- Unigene ID: Hs.480792
Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
---|---|---|---|
embryoid body | 8 / 70761 | 113 | |
blastocyst | 1 / 62319 | 16 | |
fetus | 25 / 564012 | 44 | |
neonate | 0 / 31097 | 0 | |
infant | 0 / 23620 | 0 | |
juvenile | 1 / 55556 | 17 | |
adult | 91 / 1939121 | 46 |
Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
---|---|---|---|
adrenal tumor | 2 / 12794 | 156 | |
bladder carcinoma | 0 / 17475 | 0 | |
breast (mammary gland) tumor | 6 / 94178 | 63 | |
cervical tumor | 2 / 34366 | 58 | |
chondrosarcoma | 3 / 82823 | 36 | |
colorectal tumor | 8 / 114246 | 70 | |
esophageal tumor | 0 / 17290 | 0 | |
gastrointestinal tumor | 1 / 119369 | 8 | |
germ cell tumor | 7 / 263845 | 26 | |
glioma | 9 / 106883 | 84 | |
head and neck tumor | 3 / 136302 | 22 | |
kidney tumor | 0 / 68959 | 0 | |
leukemia | 1 / 95842 | 10 | |
liver tumor | 1 / 96359 | 10 | |
lung tumor | 1 / 103127 | 9 | |
lymphoma | 3 / 71755 | 41 | |
non-neoplasia | 6 / 97250 | 61 | |
normal | 141 / 3360307 | 41 | |
ovarian tumor | 1 / 76682 | 13 | |
pancreatic tumor | 4 / 104616 | 38 | |
primitive neuroectodermal tumor of the CNS | 0 / 125680 | 0 | |
prostate cancer | 4 / 102680 | 38 | |
retinoblastoma | 1 / 46356 | 21 | |
skin tumor | 0 / 124949 | 0 | |
soft tissue/muscle tissue tumor | 3 / 125191 | 23 | |
uterine tumor | 3 / 90257 | 33 |
Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
---|---|---|---|
adipose tissue | 2 / 13106 | 152 | |
adrenal gland | 2 / 33197 | 60 | |
ascites | 0 / 40015 | 0 | |
bladder | 0 / 29757 | 0 | |
blood | 3 / 123478 | 24 | |
bone | 5 / 71655 | 69 | |
bone marrow | 0 / 48801 | 0 | |
brain | 41 / 1100989 | 37 | |
cervix | 2 / 48171 | 41 | |
connective tissue | 5 / 149255 | 33 | |
ear | 1 / 16212 | 61 | |
embryonic tissue | 10 / 215722 | 46 | |
esophagus | 0 / 20209 | 0 | |
eye | 9 / 211054 | 42 | |
heart | 3 / 89626 | 33 | |
intestine | 13 / 234472 | 55 | |
kidney | 1 / 211777 | 4 | |
larynx | 0 / 24145 | 0 | |
liver | 2 / 207743 | 9 | |
lung | 9 / 336974 | 26 | |
lymph | 3 / 44270 | 67 | |
lymph node | 10 / 91610 | 109 | |
mammary gland | 12 / 153271 | 78 | |
mouth | 2 / 67052 | 29 | |
muscle | 5 / 107715 | 46 | |
nerve | 2 / 15768 | 126 | |
ovary | 2 / 102051 | 19 | |
pancreas | 10 / 214812 | 46 | |
parathyroid | 1 / 20539 | 48 | |
pharynx | 0 / 41328 | 0 | |
pituitary gland | 0 / 16585 | 0 | |
placenta | 7 / 280825 | 24 | |
prostate | 10 / 189345 | 52 | |
salivary gland | 0 / 20155 | 0 | |
skin | 2 / 210574 | 9 | |
spleen | 1 / 53952 | 18 | |
stomach | 1 / 96619 | 10 | |
testis | 9 / 330442 | 27 | |
thymus | 1 / 81131 | 12 | |
thyroid | 2 / 47473 | 42 | |
tonsil | 1 / 16999 | 58 | |
trachea | 1 / 52413 | 19 | |
umbilical cord | 0 / 13680 | 0 | |
uterus | 17 / 232878 | 72 | |
vascular | 1 / 51780 | 19 |
Human Whole Brain Microarrayview in Allen Brain Atlas
- Probe name: A_24_P251841
- Donor H0351.2001
- Sex: Male Age: 24 years Race/Ethnicity: African American Handedness: Left
- Tissue Receipt Date: 7/29/2009 Serology: Pass Tissue pH :6.72 Additional Medical Information :History of asthma
- Postmortem Interval: 23 hours (estimated time of death to time that tissue is frozen)
- Toxicology: Positive for atropine and caffeine, at levels usually not toxicologically significant
Tissue | Expression(mean ± stddev) | Expression Bar |
---|---|---|
Amygdala | 4.94 ± 0.54 | |
Basal Forebrain | 5.26 ± 0.28 | |
Basal Part of Pons | 5.32 ± 0.27 | |
Cerebellar Cortex | 5.59 ± 0.25 | |
Cerebellar Nuclei | 5.75 ± 0.37 | |
Claustrum | 4.82 ± 0.66 | |
Epithalamus | 5.25 ± 0.45 | |
Frontal Lobe | 5.41 ± 0.38 | |
Globus Pallidus | 6.06 ± 0.22 | |
Hypothalamus | 5.15 ± 0.47 | |
Insula | 5.27 ± 0.23 | |
Limbic Lobe | 5.27 ± 0.42 | |
Mesencephalon | 5.47 ± 0.46 | |
Myelencephalon | 5.36 ± 0.43 | |
Occipital Lobe | 5.52 ± 0.33 | |
Parietal Lobe | 5.61 ± 0.51 | |
Pontine Tegmentum | 5.4 ± 0.48 | |
Striatum | 5.13 ± 0.41 | |
Subthalamus | 5.45 ± 0.85 | |
Temporal Lobe | 5.28 ± 0.39 | |
Thalamus | 5.64 ± 0.41 | |
White Matter | 6.5 ± 0.59 |
Gene Symbol | Brain Structure ID | Brain Structure Name | Express Desity/Level (Meatured by ISH) | Express Bar |
---|---|---|---|---|
Setd7 | CB | Cerebellum | 54.06 | |
100 | ||||
Setd7 | CTX | Cerebral cortex | 100 | |
98.44 | ||||
Setd7 | HIP | Hippocampal region | 77.88 | |
100 | ||||
Setd7 | HPF | Hippocampal formation | 81.04 | |
96.59 | ||||
Setd7 | HY | Hypothalamus | 41.33 | |
38.38 | ||||
Setd7 | LSX | Lateral septal complex | 48.98 | |
39.74 | ||||
Setd7 | MB | Midbrain | 54.03 | |
60.24 | ||||
Setd7 | MY | Medulla | 66.02 | |
96.61 | ||||
Setd7 | OLF | Olfactory bulb | 92.23 | |
94.44 | ||||
Setd7 | P | Pons | 51.97 | |
71.76 | ||||
Setd7 | PAL | Pallidum | 46.37 | |
56.93 | ||||
Setd7 | RHP | Retrohippocampal region | 93.56 | |
93.58 | ||||
Setd7 | sAMY | Striatum-like amygdalar nuclei | 44.68 | |
43.56 | ||||
Setd7 | STR | Striatum | 44.54 | |
41.91 | ||||
Setd7 | STRd | Striatum dorsal region | 43.57 | |
42.47 | ||||
Setd7 | STRv | Striatum ventral region | 45.88 | |
40.2 | ||||
Setd7 | TH | Thalamus | 97.98 | |
100 |
Peptide Name | Peptide Lengh | Peptide Start | Peptide End | Peptide Sequence | Source |
---|---|---|---|---|---|
PAp00024201 | 18 | 295 | 312 | ANHSFTPNCIYDMFVHPR | Peptide Atlas |