Annotation Detail for SETD7
Basic Information Top
| Gene Symbol: | SETD7 ( FLJ21193,KIAA1717,KMT7,SET7,SET7/9,SET9 ) |
|---|---|
| Gene Full Name: | SET domain containing (lysine methyltransferase) 7 |
| Band: | 4q31.1 |
| Quick Links | Entrez ID:80854; OMIM: 606594; Uniprot ID:SETD7_HUMAN; ENSEMBL ID: ENSG00000145391; HGNC ID: 30412 |
| Relate to Another Database: | SFARIGene; denovo-db |
- Unigene ID: Hs.480792
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
 | |||
| embryoid body | 8 / 70761 | 113 |  |
| blastocyst | 1 / 62319 | 16 |  |
| fetus | 25 / 564012 | 44 | |
| neonate | 0 / 31097 | 0 | |
| infant | 0 / 23620 | 0 | |
| juvenile | 1 / 55556 | 17 | |
| adult | 91 / 1939121 | 46 | |
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
| |||
| adrenal tumor | 2 / 12794 | 156 | |
| bladder carcinoma | 0 / 17475 | 0 | |
| breast (mammary gland) tumor | 6 / 94178 | 63 | |
| cervical tumor | 2 / 34366 | 58 | |
| chondrosarcoma | 3 / 82823 | 36 | |
| colorectal tumor | 8 / 114246 | 70 | |
| esophageal tumor | 0 / 17290 | 0 | |
| gastrointestinal tumor | 1 / 119369 | 8 |  |
| germ cell tumor | 7 / 263845 | 26 | |
| glioma | 9 / 106883 | 84 | |
| head and neck tumor | 3 / 136302 | 22 | |
| kidney tumor | 0 / 68959 | 0 | |
| leukemia | 1 / 95842 | 10 | |
| liver tumor | 1 / 96359 | 10 | |
| lung tumor | 1 / 103127 | 9 | |
| lymphoma | 3 / 71755 | 41 | |
| non-neoplasia | 6 / 97250 | 61 | |
| normal | 141 / 3360307 | 41 | |
| ovarian tumor | 1 / 76682 | 13 | |
| pancreatic tumor | 4 / 104616 | 38 | |
| primitive neuroectodermal tumor of the CNS | 0 / 125680 | 0 | |
| prostate cancer | 4 / 102680 | 38 | |
| retinoblastoma | 1 / 46356 | 21 | |
| skin tumor | 0 / 124949 | 0 | |
| soft tissue/muscle tissue tumor | 3 / 125191 | 23 | |
| uterine tumor | 3 / 90257 | 33 | |
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
| |||
| adipose tissue | 2 / 13106 | 152 | |
| adrenal gland | 2 / 33197 | 60 | |
| ascites | 0 / 40015 | 0 | |
| bladder | 0 / 29757 | 0 | |
| blood | 3 / 123478 | 24 | |
| bone | 5 / 71655 | 69 | |
| bone marrow | 0 / 48801 | 0 | |
| brain | 41 / 1100989 | 37 | |
| cervix | 2 / 48171 | 41 | |
| connective tissue | 5 / 149255 | 33 | |
| ear | 1 / 16212 | 61 | |
| embryonic tissue | 10 / 215722 | 46 | |
| esophagus | 0 / 20209 | 0 | |
| eye | 9 / 211054 | 42 | |
| heart | 3 / 89626 | 33 | |
| intestine | 13 / 234472 | 55 | |
| kidney | 1 / 211777 | 4 | |
| larynx | 0 / 24145 | 0 | |
| liver | 2 / 207743 | 9 | |
| lung | 9 / 336974 | 26 | |
| lymph | 3 / 44270 | 67 | |
| lymph node | 10 / 91610 | 109 | |
| mammary gland | 12 / 153271 | 78 | |
| mouth | 2 / 67052 | 29 | |
| muscle | 5 / 107715 | 46 | |
| nerve | 2 / 15768 | 126 | |
| ovary | 2 / 102051 | 19 | |
| pancreas | 10 / 214812 | 46 | |
| parathyroid | 1 / 20539 | 48 | |
| pharynx | 0 / 41328 | 0 | |
| pituitary gland | 0 / 16585 | 0 | |
| placenta | 7 / 280825 | 24 | |
| prostate | 10 / 189345 | 52 | |
| salivary gland | 0 / 20155 | 0 | |
| skin | 2 / 210574 | 9 | |
| spleen | 1 / 53952 | 18 | |
| stomach | 1 / 96619 | 10 | |
| testis | 9 / 330442 | 27 | |
| thymus | 1 / 81131 | 12 | |
| thyroid | 2 / 47473 | 42 | |
| tonsil | 1 / 16999 | 58 | |
| trachea | 1 / 52413 | 19 | |
| umbilical cord | 0 / 13680 | 0 | |
| uterus | 17 / 232878 | 72 | |
| vascular | 1 / 51780 | 19 | |
Microarray in - Probe name: A_24_P251841
- Donor H0351.2001
- Sex: Male Age: 24 years Race/Ethnicity: African American Handedness: Left
- Tissue Receipt Date: 7/29/2009 Serology: Pass Tissue pH :6.72 Additional Medical Information :History of asthma
- Postmortem Interval: 23 hours (estimated time of death to time that tissue is frozen)
- Toxicology: Positive for atropine and caffeine, at levels usually not toxicologically significant
| Tissue | Expression(mean ± stddev) | Expression Bar |
|---|---|---|
| Amygdala | 4.94 ± 0.54 | ![](../"images/bar_3.png"){kind=small}   |
| Basal Forebrain | 5.26 ± 0.28 | |
| Basal Part of Pons | 5.32 ± 0.27 | |
| Cerebellar Cortex | 5.59 ± 0.25 | |
| Cerebellar Nuclei | 5.75 ± 0.37 | |
| Claustrum | 4.82 ± 0.66 | |
| Epithalamus | 5.25 ± 0.45 | |
| Frontal Lobe | 5.41 ± 0.38 | |
| Globus Pallidus | 6.06 ± 0.22 | |
| Hypothalamus | 5.15 ± 0.47 | |
| Insula | 5.27 ± 0.23 | |
| Limbic Lobe | 5.27 ± 0.42 | |
| Mesencephalon | 5.47 ± 0.46 | |
| Myelencephalon | 5.36 ± 0.43 | |
| Occipital Lobe | 5.52 ± 0.33 | |
| Parietal Lobe | 5.61 ± 0.51 | |
| Pontine Tegmentum | 5.4 ± 0.48 | |
| Striatum | 5.13 ± 0.41 | |
| Subthalamus | 5.45 ± 0.85 | |
| Temporal Lobe | 5.28 ± 0.39 | |
| Thalamus | 5.64 ± 0.41 | |
| White Matter | 6.5 ± 0.59 | |
Mouse Brain ISH 
| Gene Symbol | Brain Structure ID | Brain Structure Name | Express Desity/Level (Meatured by ISH) | Express Bar |
|---|---|---|---|---|
| Setd7 | CB | Cerebellum | 54.06 | |
| 100 | | |||
| Setd7 | CTX | Cerebral cortex | 100 | |
| 98.44 | | |||
| Setd7 | HIP | Hippocampal region | 77.88 | |
| 100 | | |||
| Setd7 | HPF | Hippocampal formation | 81.04 | |
| 96.59 | | |||
| Setd7 | HY | Hypothalamus | 41.33 | |
| 38.38 | | |||
| Setd7 | LSX | Lateral septal complex | 48.98 | |
| 39.74 | | |||
| Setd7 | MB | Midbrain | 54.03 | |
| 60.24 | | |||
| Setd7 | MY | Medulla | 66.02 | |
| 96.61 | | |||
| Setd7 | OLF | Olfactory bulb | 92.23 | |
| 94.44 | | |||
| Setd7 | P | Pons | 51.97 | |
| 71.76 | | |||
| Setd7 | PAL | Pallidum | 46.37 | |
| 56.93 | | |||
| Setd7 | RHP | Retrohippocampal region | 93.56 | |
| 93.58 | | |||
| Setd7 | sAMY | Striatum-like amygdalar nuclei | 44.68 | |
| 43.56 | | |||
| Setd7 | STR | Striatum | 44.54 | |
| 41.91 | | |||
| Setd7 | STRd | Striatum dorsal region | 43.57 | |
| 42.47 | | |||
| Setd7 | STRv | Striatum ventral region | 45.88 | |
| 40.2 | | |||
| Setd7 | TH | Thalamus | 97.98 | |
| 100 | |
| Peptide Name | Peptide Lengh | Peptide Start | Peptide End | Peptide Sequence | Source |
|---|---|---|---|---|---|
| PAp00024201 | 18 | 295 | 312 | ANHSFTPNCIYDMFVHPR | Peptide Atlas |