AutismKB 2.0

Annotation Detail for COLEC12


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Basic Information Top
Gene Symbol:COLEC12 ( CLP1,NSR2,SCARA4,SRCL )
Gene Full Name: collectin sub-family member 12
Band: 18p11.32
Quick LinksEntrez ID:81035; OMIM: 607621; Uniprot ID:COL12_HUMAN; ENSEMBL ID: ENSG00000158270; HGNC ID: 16016
Relate to Another Database: SFARIGene; denovo-db
Unigene EST Top
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
embryoid body12 / 70761169
blastocyst2 / 6231932
fetus16 / 56401228
neonate0 / 310970 
infant0 / 236200 
juvenile0 / 555560 
adult67 / 193912134
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
adrenal tumor0 / 127940 
bladder carcinoma0 / 174750 
breast (mammary gland) tumor0 / 941780 
cervical tumor0 / 343660 
chondrosarcoma6 / 8282372
colorectal tumor1 / 1142468
esophageal tumor0 / 172900 
gastrointestinal tumor2 / 11936916
germ cell tumor3 / 26384511
glioma1 / 1068839
head and neck tumor2 / 13630214
kidney tumor2 / 6895929
leukemia0 / 958420 
liver tumor0 / 963590 
lung tumor1 / 1031279
lymphoma1 / 7175513
non-neoplasia3 / 9725030
normal85 / 336030725
ovarian tumor0 / 766820 
pancreatic tumor1 / 1046169
primitive neuroectodermal tumor of the CNS0 / 1256800 
prostate cancer2 / 10268019
retinoblastoma0 / 463560 
skin tumor0 / 1249490 
soft tissue/muscle tissue tumor1 / 1251917
uterine tumor0 / 902570 
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
adipose tissue0 / 131060 
adrenal gland0 / 331970 
ascites0 / 400150 
bladder0 / 297570 
blood0 / 1234780 
bone6 / 7165583
bone marrow0 / 488010 
brain10 / 11009899
cervix0 / 481710 
connective tissue6 / 14925540
ear8 / 16212493
embryonic tissue16 / 21572274
esophagus0 / 202090 
eye9 / 21105442
heart4 / 8962644
intestine1 / 2344724
kidney2 / 2117779
larynx0 / 241450 
liver0 / 2077430 
lung11 / 33697432
lymph0 / 442700 
lymph node0 / 916100 
mammary gland0 / 1532710 
mouth1 / 6705214
muscle0 / 1077150 
nerve0 / 157680 
ovary0 / 1020510 
pancreas1 / 2148124
parathyroid0 / 205390 
pharynx0 / 413280 
pituitary gland0 / 165850 
placenta32 / 280825113
prostate2 / 18934510
salivary gland1 / 2015549
skin2 / 2105749
spleen0 / 539520 
stomach2 / 9661920
testis0 / 3304420 
thymus1 / 8113112
thyroid0 / 474730 
tonsil0 / 169990 
trachea0 / 524130 
umbilical cord0 / 136800 
uterus1 / 2328784
vascular2 / 5178038
Microarray in BioGPS Top
Select probe  
  • Microarray Platform: GeneAtlas U133A, gcrma
  • Affymatrix Probe ID: 221019_s_at
Cell line Expression level Expression bar
721_B_lymphoblasts6.4
Adipocyte7.95
AdrenalCortex8.65
Adrenalgland6.7
Amygdala11.3
Appendix13.4
AtrioventricularNode10.75
BDCA4+_DentriticCells6
Bonemarrow7.5
BronchialEpithelialCells6.85
CD105+_Endothelial7.1
CD14+_Monocytes5.9
CD19+_BCells(neg._sel.)6
CD33+_Myeloid7.9
CD34+5.95
CD4+_Tcells4.45
CD56+_NKCells6.35
CD71+_EarlyErythroid5.35
CD8+_Tcells6.35
CardiacMyocytes13.4
Caudatenucleus6.9
Cerebellum6.3
CerebellumPeduncles9.1
CiliaryGanglion6.35
CingulateCortex7.95
Colorectaladenocarcinoma7.35
DorsalRootGanglion6.5
FetalThyroid9.15
Fetalbrain6.85
Fetalliver6.55
Fetallung64.45
GlobusPallidus5.8
Heart12.5
Hypothalamus17.75
Kidney6.55
Leukemia_chronicMyelogenousK-5626.4
Leukemia_promyelocytic-HL-604.35
Leukemialymphoblastic(MOLT-4)5.5
Liver11
Lung38.55
Lymphnode6.25
Lymphoma_burkitts(Daudi)7.75
Lymphoma_burkitts(Raji)8.2
MedullaOblongata7.6
OccipitalLobe9.5
OlfactoryBulb16.9
Ovary5.5
Pancreas6
PancreaticIslet8.15
ParietalLobe8.45
Pituitary8.65
Placenta122.65
Pons7.4
PrefrontalCortex12.45
Prostate58.4
Salivarygland6.95
SkeletalMuscle10.4
Skin6.7
SmoothMuscle16.6
Spinalcord15.05
SubthalamicNucleus7.1
SuperiorCervicalGanglion14.1
TemporalLobe7
Testis6.3
TestisGermCell6.1
TestisIntersitial6.5
TestisLeydigCell7.75
TestisSeminiferousTubule6.4
Thalamus7.9
Thymus5.5
Thyroid18.7
Tongue10.8
Tonsil7.5
Trachea13.75
TrigeminalGanglion9.3
Uterus53.85
UterusCorpus72.15
WholeBlood8
Wholebrain10.35
colon18.65
pineal_day19.02
pineal_night18.2
retina80.125
small_intestine18.1
Allen Brain Atlas Top
Human Whole Brain Microarrayview in Allen Brain Atlas
  • Probe id     Donor id      
  • Probe name: CUST_14278_PI416261804
  • Donor H0351.2001
  • Sex: Male     Age: 24 years     Race/Ethnicity: African American     Handedness: Left
  • Tissue Receipt Date: 7/29/2009     Serology: Pass      Tissue pH :6.72     Additional Medical Information :History of asthma
  • Postmortem Interval: 23 hours (estimated time of death to time that tissue is frozen)
  • Toxicology: Positive for atropine and caffeine, at levels usually not toxicologically significant
Tissue Expression(mean ± stddev) Expression Bar
Amygdala6.94 ± 0.5
Basal Forebrain7.44 ± 0.34
Basal Part of Pons6.91 ± 0.27
Cerebellar Cortex7.33 ± 0.24
Cerebellar Nuclei8.41 ± 0.35
Claustrum7.33 ± 0.34
Epithalamus8.92 ± 0.5
Frontal Lobe7.54 ± 0.44
Globus Pallidus8.89 ± 0.35
Hypothalamus7.38 ± 0.6
Insula7.45 ± 0.22
Limbic Lobe7.52 ± 0.47
Mesencephalon7.76 ± 0.31
Myelencephalon7.61 ± 0.6
Occipital Lobe7.6 ± 0.5
Parietal Lobe7.47 ± 0.48
Pontine Tegmentum7.78 ± 0.48
Striatum8.49 ± 0.63
Subthalamus7.75 ± 0.46
Temporal Lobe7.46 ± 0.38
Thalamus7.86 ± 0.34
White Matter8.24 ± 0.58
Mouse Brain ISH
Peptide Top
Peptide Name Peptide Lengh Peptide Start Peptide End Peptide Sequence Source
PAp00376514 10 639 648 SSHLVFINTR Peptide Atlas

Simple Query:


  (e.g. CHD8)

Syndromic Genes

Non-syndromic Genes

AutismKB Statistics

  • Studies: 1,036
  • Genes: 1,379
  • CNVs/SVs: 5,420
  • SNVs/Indels: 11,669
  • de novo Mutations: 5,669
  • Mosaics: 789
  • Linkage Regions: 172
  • Paper Collected: 6/30/2018
  • Last Update: 8/26/2018


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