AutismKB 2.0

Annotation Detail for CALU


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Basic Information Top
Gene Symbol:CALU ( FLJ90608 )
Gene Full Name: calumenin
Band: 7q32.1
Quick LinksEntrez ID:813; OMIM: 603420; Uniprot ID:CALU_HUMAN; ENSEMBL ID: ENSG00000128595; HGNC ID: 1458
Relate to Another Database: SFARIGene; denovo-db
Unigene EST Top
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
embryoid body0 / 707610 
blastocyst0 / 623190 
fetus1 / 5640121
neonate0 / 310970 
infant0 / 236200 
juvenile0 / 555560 
adult16 / 19391218
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
adrenal tumor0 / 127940 
bladder carcinoma0 / 174750 
breast (mammary gland) tumor1 / 9417810
cervical tumor0 / 343660 
chondrosarcoma6 / 8282372
colorectal tumor2 / 11424617
esophageal tumor1 / 1729057
gastrointestinal tumor0 / 1193690 
germ cell tumor0 / 2638450 
glioma4 / 10688337
head and neck tumor0 / 1363020 
kidney tumor0 / 689590 
leukemia0 / 958420 
liver tumor0 / 963590 
lung tumor1 / 1031279
lymphoma0 / 717550 
non-neoplasia1 / 9725010
normal8 / 33603072
ovarian tumor0 / 766820 
pancreatic tumor0 / 1046160 
primitive neuroectodermal tumor of the CNS0 / 1256800 
prostate cancer0 / 1026800 
retinoblastoma0 / 463560 
skin tumor1 / 1249498
soft tissue/muscle tissue tumor2 / 12519115
uterine tumor2 / 9025722
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
adipose tissue0 / 131060 
adrenal gland0 / 331970 
ascites0 / 400150 
bladder0 / 297570 
blood0 / 1234780 
bone2 / 7165527
bone marrow0 / 488010 
brain7 / 11009896
cervix0 / 481710 
connective tissue6 / 14925540
ear0 / 162120 
embryonic tissue0 / 2157220 
esophagus1 / 2020949
eye1 / 2110544
heart0 / 896260 
intestine2 / 2344728
kidney0 / 2117770 
larynx0 / 241450 
liver0 / 2077430 
lung1 / 3369742
lymph0 / 442700 
lymph node0 / 916100 
mammary gland2 / 15327113
mouth0 / 670520 
muscle0 / 1077150 
nerve0 / 157680 
ovary0 / 1020510 
pancreas0 / 2148120 
parathyroid0 / 205390 
pharynx0 / 413280 
pituitary gland0 / 165850 
placenta1 / 2808253
prostate0 / 1893450 
salivary gland0 / 201550 
skin1 / 2105744
spleen0 / 539520 
stomach0 / 966190 
testis1 / 3304423
thymus0 / 811310 
thyroid0 / 474730 
tonsil0 / 169990 
trachea0 / 524130 
umbilical cord0 / 136800 
uterus3 / 23287812
vascular0 / 517800 
Microarray in BioGPS Top
Select probe  
  • Microarray Platform: GeneAtlas U133A, gcrma
  • Affymatrix Probe ID: 214845_s_at
Cell line Expression level Expression bar
721_B_lymphoblasts80.4
Adipocyte146.85
AdrenalCortex31.3
Adrenalgland23.5
Amygdala19.65
Appendix35.95
AtrioventricularNode36.7
BDCA4+_DentriticCells32.45
Bonemarrow28.3
BronchialEpithelialCells127.65
CD105+_Endothelial23.4
CD14+_Monocytes27.25
CD19+_BCells(neg._sel.)23.55
CD33+_Myeloid32.2
CD34+33.5
CD4+_Tcells17.4
CD56+_NKCells25.5
CD71+_EarlyErythroid25.6
CD8+_Tcells20.65
CardiacMyocytes990.65
Caudatenucleus22.9
Cerebellum21.15
CerebellumPeduncles31.2
CiliaryGanglion28.25
CingulateCortex24.95
Colorectaladenocarcinoma25.6
DorsalRootGanglion27.9
FetalThyroid27.7
Fetalbrain20.1
Fetalliver39.55
Fetallung30.3
GlobusPallidus22.2
Heart41.95
Hypothalamus21.65
Kidney22.15
Leukemia_chronicMyelogenousK-56255.4
Leukemia_promyelocytic-HL-6020.3
Leukemialymphoblastic(MOLT-4)20.4
Liver40.8
Lung24.95
Lymphnode20.1
Lymphoma_burkitts(Daudi)42.9
Lymphoma_burkitts(Raji)38.9
MedullaOblongata21.5
OccipitalLobe22.85
OlfactoryBulb20
Ovary30.15
Pancreas21.6
PancreaticIslet50.85
ParietalLobe30.1
Pituitary30.25
Placenta233.7
Pons26.75
PrefrontalCortex26.15
Prostate23.5
Salivarygland21.2
SkeletalMuscle50.7
Skin28
SmoothMuscle1522.25
Spinalcord27.05
SubthalamicNucleus24.4
SuperiorCervicalGanglion48.9
TemporalLobe25.1
Testis21.35
TestisGermCell18.6
TestisIntersitial20.45
TestisLeydigCell27.05
TestisSeminiferousTubule22.95
Thalamus25.5
Thymus16.8
Thyroid24.45
Tongue29.2
Tonsil25.65
Trachea27.6
TrigeminalGanglion39
Uterus19.05
UterusCorpus36.25
WholeBlood23.05
Wholebrain16.2
colon25.15
pineal_day28.36
pineal_night29.2
retina50.45
small_intestine24.85
Allen Brain Atlas Top
Human Whole Brain Microarrayview in Allen Brain Atlas
  • Probe id     Donor id      
  • Probe name: A_23_P122815
  • Donor H0351.2001
  • Sex: Male     Age: 24 years     Race/Ethnicity: African American     Handedness: Left
  • Tissue Receipt Date: 7/29/2009     Serology: Pass      Tissue pH :6.72     Additional Medical Information :History of asthma
  • Postmortem Interval: 23 hours (estimated time of death to time that tissue is frozen)
  • Toxicology: Positive for atropine and caffeine, at levels usually not toxicologically significant
Tissue Expression(mean ± stddev) Expression Bar
Amygdala7.64 ± 0.33
Basal Forebrain7.8 ± 0.14
Basal Part of Pons7.55 ± 0.23
Cerebellar Cortex7.55 ± 0.24
Cerebellar Nuclei7.78 ± 0.22
Claustrum7.85 ± 0.53
Epithalamus7.98 ± 0.27
Frontal Lobe7.86 ± 0.41
Globus Pallidus8 ± 0.27
Hypothalamus7.75 ± 0.36
Insula7.78 ± 0.35
Limbic Lobe7.9 ± 0.32
Mesencephalon7.95 ± 0.3
Myelencephalon7.82 ± 0.33
Occipital Lobe7.77 ± 0.24
Parietal Lobe7.76 ± 0.26
Pontine Tegmentum7.88 ± 0.33
Striatum8.03 ± 0.26
Subthalamus7.91 ± 0.09
Temporal Lobe7.8 ± 0.3
Thalamus7.78 ± 0.24
White Matter8.2 ± 0.08
Mouse Brain ISH
Peptide Top
Peptide Name Peptide Lengh Peptide Start Peptide End Peptide Sequence Source
CALU_HUMAN_103 8 103 110 WIYEDVER PRIDE
CALU_HUMAN_104 8 104 111 WIYEDVER PRIDE
CALU_HUMAN_174 16 174 189 EEFTAFLHPEEYDYMK PRIDE
CALU_HUMAN_18 10 18 27 LSKPTEKKDR PRIDE
CALU_HUMAN_190 13 190 202 DIVVQETMEDIDK PRIDE
CALU_HUMAN_20 8 20 27 KPTEKKDR PRIDE
CALU_HUMAN_231 10 231 240 TEREQFVEFR PRIDE
CALU_HUMAN_235 7 235 241 EQFVEFR PRIDE
CALU_HUMAN_248 23 248 270 MDKEETKDWILPSDYDHAEAEAR PRIDE
CALU_HUMAN_25 34 25 58 DRVHHEPQLSDKVHNDAQSFDYDHDAFLGAEEAK PRIDE
CALU_HUMAN_256 16 256 271 DWILPSDYDHAEAEAR PRIDE
CALU_HUMAN_59 13 59 71 TFDQLTPEESKER PRIDE
CALU_HUMAN_79 19 79 97 IDGDKDGFVTVDELKDWIK PRIDE
PAp00008325 22 38 59 VHNDAQSFDYDHDAFLGAEEAK Peptide Atlas

Simple Query:


  (e.g. CHD8)

Syndromic Genes

Non-syndromic Genes

AutismKB Statistics

  • Studies: 1,036
  • Genes: 1,379
  • CNVs/SVs: 5,420
  • SNVs/Indels: 11,669
  • de novo Mutations: 5,669
  • Mosaics: 789
  • Linkage Regions: 172
  • Paper Collected: 6/30/2018
  • Last Update: 8/26/2018


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