AutismKB 2.0

Annotation Detail for TAF15


View Evidences View Variants View Annotations
Basic Information Top
Gene Symbol:TAF15 ( Npl3,RBP56,TAF2N,TAFII68,hTAFII68 )
Gene Full Name: TAF15 RNA polymerase II, TATA box binding protein (TBP)-associated factor, 68kDa
Band: 17q12
Quick LinksEntrez ID:8148; OMIM: 601574; Uniprot ID:RBP56_HUMAN; ENSEMBL ID: ENSG00000172660; HGNC ID: 11547
Relate to Another Database: SFARIGene; denovo-db
Unigene EST Top
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
embryoid body5 / 7076170
blastocyst3 / 6231948
fetus33 / 56401258
neonate5 / 31097160
infant1 / 2362042
juvenile8 / 55556143
adult176 / 193912190
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
adrenal tumor0 / 127940 
bladder carcinoma1 / 1747557
breast (mammary gland) tumor20 / 94178212
cervical tumor0 / 343660 
chondrosarcoma0 / 828230 
colorectal tumor21 / 114246183
esophageal tumor2 / 17290115
gastrointestinal tumor17 / 119369142
germ cell tumor19 / 26384572
glioma11 / 106883102
head and neck tumor33 / 136302242
kidney tumor8 / 68959116
leukemia4 / 9584241
liver tumor1 / 9635910
lung tumor7 / 10312767
lymphoma2 / 7175527
non-neoplasia12 / 97250123
normal256 / 336030776
ovarian tumor4 / 7668252
pancreatic tumor1 / 1046169
primitive neuroectodermal tumor of the CNS19 / 125680151
prostate cancer16 / 102680155
retinoblastoma3 / 4635664
skin tumor7 / 12494956
soft tissue/muscle tissue tumor3 / 12519123
uterine tumor1 / 9025711
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
adipose tissue2 / 13106152
adrenal gland1 / 3319730
ascites1 / 4001524
bladder4 / 29757134
blood6 / 12347848
bone0 / 716550 
bone marrow2 / 4880140
brain74 / 110098967
cervix2 / 4817141
connective tissue11 / 14925573
ear0 / 162120 
embryonic tissue13 / 21572260
esophagus2 / 2020998
eye6 / 21105428
heart8 / 8962689
intestine35 / 234472149
kidney24 / 211777113
larynx4 / 24145165
liver8 / 20774338
lung31 / 33697491
lymph1 / 4427022
lymph node5 / 9161054
mammary gland20 / 153271130
mouth24 / 67052357
muscle5 / 10771546
nerve0 / 157680 
ovary5 / 10205148
pancreas1 / 2148124
parathyroid1 / 2053948
pharynx2 / 4132848
pituitary gland3 / 16585180
placenta23 / 28082581
prostate30 / 189345158
salivary gland0 / 201550 
skin12 / 21057456
spleen27 / 53952500
stomach16 / 96619165
testis31 / 33044293
thymus30 / 81131369
thyroid6 / 47473126
tonsil0 / 169990 
trachea0 / 524130 
umbilical cord0 / 136800 
uterus34 / 232878145
vascular8 / 51780154
Microarray in BioGPS Top
Select probe  
  • Microarray Platform: GeneAtlas U133A, gcrma
  • Affymatrix Probe ID: 202840_at
Cell line Expression level Expression bar
721_B_lymphoblasts226.05
Adipocyte95.15
AdrenalCortex127.15
Adrenalgland79.65
Amygdala108.8
Appendix95
AtrioventricularNode96.9
BDCA4+_DentriticCells217
Bonemarrow104.5
BronchialEpithelialCells53.1
CD105+_Endothelial244.35
CD14+_Monocytes116.55
CD19+_BCells(neg._sel.)292.9
CD33+_Myeloid177.05
CD34+366
CD4+_Tcells234.65
CD56+_NKCells252.35
CD71+_EarlyErythroid120.7
CD8+_Tcells103.1
CardiacMyocytes133.7
Caudatenucleus73.8
Cerebellum71.2
CerebellumPeduncles132.7
CiliaryGanglion106.2
CingulateCortex99.7
Colorectaladenocarcinoma396.25
DorsalRootGanglion80
FetalThyroid133.05
Fetalbrain94.35
Fetalliver81.1
Fetallung54.2
GlobusPallidus72.65
Heart125
Hypothalamus94.85
Kidney69.8
Leukemia_chronicMyelogenousK-56292.25
Leukemia_promyelocytic-HL-60109.2
Leukemialymphoblastic(MOLT-4)92.1
Liver109.7
Lung109.2
Lymphnode92.45
Lymphoma_burkitts(Daudi)127.75
Lymphoma_burkitts(Raji)148.1
MedullaOblongata76
OccipitalLobe54.4
OlfactoryBulb78.45
Ovary74.75
Pancreas80.15
PancreaticIslet100.85
ParietalLobe84
Pituitary130.1
Placenta79.45
Pons102.7
PrefrontalCortex133.9
Prostate118
Salivarygland100.55
SkeletalMuscle141.1
Skin81.85
SmoothMuscle93.95
Spinalcord95.65
SubthalamicNucleus74.9
SuperiorCervicalGanglion119.55
TemporalLobe95.05
Testis77.95
TestisGermCell129.05
TestisIntersitial102.9
TestisLeydigCell116.9
TestisSeminiferousTubule136.55
Thalamus160.7
Thymus56.85
Thyroid110.7
Tongue101.05
Tonsil87.85
Trachea89.1
TrigeminalGanglion116.85
Uterus68.1
UterusCorpus92.05
WholeBlood86.65
Wholebrain58.5
colon121.85
pineal_day152.28
pineal_night155.08
retina122.825
small_intestine124.4
Allen Brain Atlas Top
Human Whole Brain Microarrayview in Allen Brain Atlas
  • Probe id     Donor id      
  • Probe name: CUST_16224_PI416261804
  • Donor H0351.2001
  • Sex: Male     Age: 24 years     Race/Ethnicity: African American     Handedness: Left
  • Tissue Receipt Date: 7/29/2009     Serology: Pass      Tissue pH :6.72     Additional Medical Information :History of asthma
  • Postmortem Interval: 23 hours (estimated time of death to time that tissue is frozen)
  • Toxicology: Positive for atropine and caffeine, at levels usually not toxicologically significant
Tissue Expression(mean ± stddev) Expression Bar
Amygdala4.45 ± 0.72
Basal Forebrain4.33 ± 0.39
Basal Part of Pons3.97 ± 0.47
Cerebellar Cortex4.49 ± 0.5
Cerebellar Nuclei3.91 ± 0.5
Claustrum4.44 ± 0.78
Epithalamus4.14 ± 0.63
Frontal Lobe4.14 ± 0.56
Globus Pallidus4.66 ± 0.46
Hypothalamus3.86 ± 0.52
Insula4.18 ± 0.52
Limbic Lobe4.2 ± 0.59
Mesencephalon4.36 ± 0.63
Myelencephalon4.18 ± 0.54
Occipital Lobe4.39 ± 0.52
Parietal Lobe4.19 ± 0.49
Pontine Tegmentum4.26 ± 0.58
Striatum4.33 ± 0.58
Subthalamus4.74 ± 0.67
Temporal Lobe4.26 ± 0.5
Thalamus4.12 ± 0.54
White Matter4.96 ± 0.25
Mouse Brain ISH
Gene Symbol Brain Structure ID Brain Structure Name Express Desity/Level (Meatured by ISH) Express Bar
Taf15CBCerebellum52.86
72.98
Taf15CTXCerebral cortex100
100
Taf15HIPHippocampal region71.86
100
Taf15HPFHippocampal formation76.88
95.66
Taf15HYHypothalamus98.37
83.21
Taf15LSXLateral septal complex100
100
Taf15MBMidbrain99.99
95.13
Taf15MYMedulla85.5
93.8
Taf15OLFOlfactory bulb100
100
Taf15PPons75.59
79.53
Taf15PALPallidum88.63
84.33
Taf15RHPRetrohippocampal region84.77
75.25
Taf15sAMYStriatum-like amygdalar nuclei85.24
67.05
Taf15STRStriatum78.2
62.87
Taf15STRdStriatum dorsal region64.32
52.27
Taf15STRvStriatum ventral region100
83.07
Taf15THThalamus84.56
75.49
Peptide Top
Peptide Name Peptide Lengh Peptide Start Peptide End Peptide Sequence Source
PAp00007115 18 355 372 SGDWVCPNPSCGNMNFAR Peptide Atlas
RBP56_HUMAN_2 16 2 17 SDSGSYGQSGGEQQSY PRIDE
RBP56_HUMAN_423 9 423 431 SGGGYGGDR PRIDE

Simple Query:


  (e.g. CHD8)

Syndromic Genes

Non-syndromic Genes

AutismKB Statistics

  • Studies: 1,036
  • Genes: 1,379
  • CNVs/SVs: 5,420
  • SNVs/Indels: 11,669
  • de novo Mutations: 5,669
  • Mosaics: 789
  • Linkage Regions: 172
  • Paper Collected: 6/30/2018
  • Last Update: 8/26/2018


Copyright © 2017, Center for Bioinformatics , Peking University | All Rights Reserved