AutismKB 2.0

Annotation Detail for GDPD5


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Basic Information Top
Gene Symbol:GDPD5 ( GDE2,PP1665 )
Gene Full Name: glycerophosphodiester phosphodiesterase domain containing 5
Band: 11q13.4-q13.5
Quick LinksEntrez ID:81544; OMIM: 609632; Uniprot ID:GDPD5_HUMAN; ENSEMBL ID: ENSG00000158555; HGNC ID: 28804
Relate to Another Database: SFARIGene; denovo-db
Unigene EST Top
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
embryoid body0 / 707610 
blastocyst2 / 6231932
fetus15 / 56401226
neonate1 / 3109732
infant0 / 236200 
juvenile2 / 5555635
adult67 / 193912134
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
adrenal tumor0 / 127940 
bladder carcinoma0 / 174750 
breast (mammary gland) tumor0 / 941780 
cervical tumor0 / 343660 
chondrosarcoma0 / 828230 
colorectal tumor1 / 1142468
esophageal tumor0 / 172900 
gastrointestinal tumor0 / 1193690 
germ cell tumor7 / 26384526
glioma1 / 1068839
head and neck tumor1 / 1363027
kidney tumor4 / 6895958
leukemia2 / 9584220
liver tumor3 / 9635931
lung tumor0 / 1031270 
lymphoma0 / 717550 
non-neoplasia0 / 972500 
normal134 / 336030739
ovarian tumor3 / 7668239
pancreatic tumor0 / 1046160 
primitive neuroectodermal tumor of the CNS1 / 1256807
prostate cancer0 / 1026800 
retinoblastoma2 / 4635643
skin tumor4 / 12494932
soft tissue/muscle tissue tumor1 / 1251917
uterine tumor0 / 902570 
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
adipose tissue2 / 13106152
adrenal gland0 / 331970 
ascites0 / 400150 
bladder0 / 297570 
blood1 / 1234788
bone2 / 7165527
bone marrow0 / 488010 
brain18 / 110098916
cervix0 / 481710 
connective tissue1 / 1492556
ear0 / 162120 
embryonic tissue2 / 2157229
esophagus0 / 202090 
eye12 / 21105456
heart3 / 8962633
intestine5 / 23447221
kidney5 / 21177723
larynx0 / 241450 
liver3 / 20774314
lung6 / 33697417
lymph0 / 442700 
lymph node1 / 9161010
mammary gland1 / 1532716
mouth0 / 670520 
muscle0 / 1077150 
nerve0 / 157680 
ovary4 / 10205139
pancreas0 / 2148120 
parathyroid0 / 205390 
pharynx0 / 413280 
pituitary gland0 / 165850 
placenta28 / 28082599
prostate1 / 1893455
salivary gland0 / 201550 
skin5 / 21057423
spleen20 / 53952370
stomach1 / 9661910
testis26 / 33044278
thymus3 / 8113136
thyroid1 / 4747321
tonsil0 / 169990 
trachea2 / 5241338
umbilical cord0 / 136800 
uterus3 / 23287812
vascular1 / 5178019
Microarray in BioGPS Top
Select probe  
  • Microarray Platform: GeneAtlas U133A, gcrma
  • Affymatrix Probe ID: 213343_s_at
Cell line Expression level Expression bar
721_B_lymphoblasts13.4
Adipocyte10.15
AdrenalCortex11.1
Adrenalgland8.95
Amygdala11.2
Appendix8.7
AtrioventricularNode7.75
BDCA4+_DentriticCells11.85
Bonemarrow10.5
BronchialEpithelialCells8.35
CD105+_Endothelial20.85
CD14+_Monocytes14.15
CD19+_BCells(neg._sel.)11.65
CD33+_Myeloid19.15
CD34+13.6
CD4+_Tcells22.75
CD56+_NKCells13.05
CD71+_EarlyErythroid111.7
CD8+_Tcells11.15
CardiacMyocytes13.15
Caudatenucleus9.75
Cerebellum32.15
CerebellumPeduncles12.9
CiliaryGanglion7.55
CingulateCortex30.4
Colorectaladenocarcinoma13.6
DorsalRootGanglion8.1
FetalThyroid9.9
Fetalbrain11.95
Fetalliver9.25
Fetallung8.75
GlobusPallidus7.55
Heart23.55
Hypothalamus11.8
Kidney7.95
Leukemia_chronicMyelogenousK-56210
Leukemia_promyelocytic-HL-609.45
Leukemialymphoblastic(MOLT-4)11.35
Liver14.05
Lung12.35
Lymphnode10.4
Lymphoma_burkitts(Daudi)13.8
Lymphoma_burkitts(Raji)30
MedullaOblongata9.8
OccipitalLobe6.35
OlfactoryBulb8.95
Ovary7.1
Pancreas8.7
PancreaticIslet12.05
ParietalLobe10.85
Pituitary12.65
Placenta279.7
Pons10.2
PrefrontalCortex13.15
Prostate13
Salivarygland8.5
SkeletalMuscle12.15
Skin8.1
SmoothMuscle11.5
Spinalcord14
SubthalamicNucleus9.7
SuperiorCervicalGanglion11.6
TemporalLobe8.15
Testis82.05
TestisGermCell22.85
TestisIntersitial15.05
TestisLeydigCell14.55
TestisSeminiferousTubule20.8
Thalamus27.05
Thymus8.5
Thyroid13.9
Tongue10.45
Tonsil9.75
Trachea8.95
TrigeminalGanglion10.45
Uterus9.65
UterusCorpus9.25
WholeBlood13.15
Wholebrain8.65
colon10.75
pineal_day238.06
pineal_night136.48
retina60.55
small_intestine8.05
Allen Brain Atlas Top
Human Whole Brain Microarrayview in Allen Brain Atlas
  • Probe id     Donor id      
  • Probe name: A_24_P261567
  • Donor H0351.2001
  • Sex: Male     Age: 24 years     Race/Ethnicity: African American     Handedness: Left
  • Tissue Receipt Date: 7/29/2009     Serology: Pass      Tissue pH :6.72     Additional Medical Information :History of asthma
  • Postmortem Interval: 23 hours (estimated time of death to time that tissue is frozen)
  • Toxicology: Positive for atropine and caffeine, at levels usually not toxicologically significant
Tissue Expression(mean ± stddev) Expression Bar
Amygdala3.49 ± 0.75
Basal Forebrain2.98 ± 0.43
Basal Part of Pons3.53 ± 0.47
Cerebellar Cortex4.34 ± 0.36
Cerebellar Nuclei3.26 ± 0.56
Claustrum4.13 ± 0.71
Epithalamus3.41 ± 0.69
Frontal Lobe3.85 ± 0.57
Globus Pallidus2.75 ± 0.9
Hypothalamus3.51 ± 0.49
Insula3.98 ± 0.41
Limbic Lobe3.47 ± 0.65
Mesencephalon3.7 ± 0.66
Myelencephalon3.67 ± 0.65
Occipital Lobe3.21 ± 0.67
Parietal Lobe3.63 ± 0.64
Pontine Tegmentum3.7 ± 0.84
Striatum3.21 ± 0.57
Subthalamus4.05 ± 0.12
Temporal Lobe3.68 ± 0.65
Thalamus4.23 ± 0.63
White Matter3.46 ± 1.33
Mouse Brain ISH
Peptide Top
Peptide Name Peptide Lengh Peptide Start Peptide End Peptide Sequence Source
PAp01429233 9 308 316 LNAGQWFLK Peptide Atlas

Simple Query:


  (e.g. CHD8)

Syndromic Genes

Non-syndromic Genes

AutismKB Statistics

  • Studies: 1,036
  • Genes: 1,379
  • CNVs/SVs: 5,420
  • SNVs/Indels: 11,669
  • de novo Mutations: 5,669
  • Mosaics: 789
  • Linkage Regions: 172
  • Paper Collected: 6/30/2018
  • Last Update: 8/26/2018


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