AutismKB 2.0

Annotation Detail for STMN4


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Basic Information Top
Gene Symbol:STMN4 ( MGC111012,RB3 )
Gene Full Name: stathmin-like 4
Band: 8p21.2
Quick LinksEntrez ID:81551; OMIM: NA; Uniprot ID:STMN4_HUMAN; ENSEMBL ID: ENSG00000015592; HGNC ID: 16078
Relate to Another Database: SFARIGene; denovo-db
Unigene EST Top
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
embryoid body0 / 707610 
blastocyst0 / 623190 
fetus64 / 564012113
neonate0 / 310970 
infant9 / 23620381
juvenile1 / 5555617
adult53 / 193912127
Microarray in BioGPS Top
Select probe  
  • Microarray Platform: GeneAtlas U133A, gcrma
  • Affymatrix Probe ID: 221236_s_at
Cell line Expression level Expression bar
721_B_lymphoblasts6.55
Adipocyte5.75
AdrenalCortex6.2
Adrenalgland5.25
Amygdala736.5
Appendix7.85
AtrioventricularNode27.95
BDCA4+_DentriticCells5.75
Bonemarrow6.75
BronchialEpithelialCells5.2
CD105+_Endothelial5.65
CD14+_Monocytes6.1
CD19+_BCells(neg._sel.)5.9
CD33+_Myeloid6.7
CD34+7.1
CD4+_Tcells5.8
CD56+_NKCells6.35
CD71+_EarlyErythroid5.4
CD8+_Tcells4.95
CardiacMyocytes7.65
Caudatenucleus174
Cerebellum154.55
CerebellumPeduncles201.2
CiliaryGanglion7.95
CingulateCortex423.6
Colorectaladenocarcinoma5.9
DorsalRootGanglion13.1
FetalThyroid5.6
Fetalbrain1185.5
Fetalliver5
Fetallung4.35
GlobusPallidus206.8
Heart7.5
Hypothalamus471.45
Kidney6.3
Leukemia_chronicMyelogenousK-5624.9
Leukemia_promyelocytic-HL-604.9
Leukemialymphoblastic(MOLT-4)4.55
Liver7.9
Lung6.1
Lymphnode4.9
Lymphoma_burkitts(Daudi)7.1
Lymphoma_burkitts(Raji)8.2
MedullaOblongata241.55
OccipitalLobe356.4
OlfactoryBulb10.15
Ovary4.15
Pancreas5.2
PancreaticIslet5.95
ParietalLobe501.8
Pituitary8.35
Placenta5.5
Pons74.2
PrefrontalCortex359.05
Prostate6.95
Salivarygland5.95
SkeletalMuscle7.55
Skin26.25
SmoothMuscle6.35
Spinalcord463.95
SubthalamicNucleus221.7
SuperiorCervicalGanglion17.45
TemporalLobe122.4
Testis4.85
TestisGermCell4.4
TestisIntersitial4.9
TestisLeydigCell5.85
TestisSeminiferousTubule5.1
Thalamus305.3
Thymus4.4
Thyroid6.7
Tongue6.6
Tonsil5.45
Trachea4.8
TrigeminalGanglion17.6
Uterus4.4
UterusCorpus5.3
WholeBlood6.15
Wholebrain822.3
colon5.6
pineal_day17.7
pineal_night20.48
retina108.6
small_intestine5.45
Allen Brain Atlas Top
Human Whole Brain Microarrayview in Allen Brain Atlas
  • Probe id     Donor id      
  • Probe name: CUST_2199_PI416261804
  • Donor H0351.2001
  • Sex: Male     Age: 24 years     Race/Ethnicity: African American     Handedness: Left
  • Tissue Receipt Date: 7/29/2009     Serology: Pass      Tissue pH :6.72     Additional Medical Information :History of asthma
  • Postmortem Interval: 23 hours (estimated time of death to time that tissue is frozen)
  • Toxicology: Positive for atropine and caffeine, at levels usually not toxicologically significant
Tissue Expression(mean ± stddev) Expression Bar
Amygdala8.08 ± 0.33
Basal Forebrain7.69 ± 0.28
Basal Part of Pons8.18 ± 0.6
Cerebellar Cortex7.92 ± 0.36
Cerebellar Nuclei8.14 ± 0.4
Claustrum7.98 ± 0.45
Epithalamus6.79 ± 1.04
Frontal Lobe8.09 ± 0.52
Globus Pallidus8.76 ± 0.23
Hypothalamus7.33 ± 0.48
Insula8.09 ± 0.33
Limbic Lobe8.1 ± 0.47
Mesencephalon7.76 ± 0.64
Myelencephalon7.96 ± 0.54
Occipital Lobe7.58 ± 0.53
Parietal Lobe7.88 ± 0.39
Pontine Tegmentum8.04 ± 0.44
Striatum7.41 ± 0.44
Subthalamus7.81 ± 0.18
Temporal Lobe8.19 ± 0.45
Thalamus8.17 ± 0.26
White Matter9.97 ± 0.19
Mouse Brain ISH
Gene Symbol Brain Structure ID Brain Structure Name Express Desity/Level (Meatured by ISH) Express Bar
Stmn4CBCerebellum63.61
96.57
Stmn4CTXCerebral cortex100
100
Stmn4HIPHippocampal region97.47
100
Stmn4HPFHippocampal formation100
100
Stmn4HYHypothalamus100
99.06
Stmn4LSXLateral septal complex100
91.36
Stmn4MBMidbrain100
100
Stmn4MYMedulla100
100
Stmn4OLFOlfactory bulb100
100
Stmn4PPons100
100
Stmn4PALPallidum100
99.64
Stmn4RHPRetrohippocampal region100
100
Stmn4sAMYStriatum-like amygdalar nuclei93.13
84.57
Stmn4STRStriatum99.55
94.28
Stmn4STRdStriatum dorsal region98.86
93.29
Stmn4STRvStriatum ventral region100
93.36
Stmn4THThalamus100
100
Peptide Top
Peptide Name Peptide Lengh Peptide Start Peptide End Peptide Sequence Source
PAp00071729 8 124 131 KLEAAEER Peptide Atlas

Simple Query:


  (e.g. CHD8)

Syndromic Genes

Non-syndromic Genes

AutismKB Statistics

  • Studies: 1,036
  • Genes: 1,379
  • CNVs/SVs: 5,420
  • SNVs/Indels: 11,669
  • de novo Mutations: 5,669
  • Mosaics: 789
  • Linkage Regions: 172
  • Paper Collected: 6/30/2018
  • Last Update: 8/26/2018