AutismKB 2.0

Annotation Detail for VOPP1


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Basic Information Top
Gene Symbol:VOPP1 ( DKFZp564K0822,ECOP,FLJ20532,GASP )
Gene Full Name: vesicular, overexpressed in cancer, prosurvival protein 1
Band: 7p11.2
Quick LinksEntrez ID:81552; OMIM: 611915; Uniprot ID:VOPP1_HUMAN; ENSEMBL ID: ENSG00000154978; HGNC ID: 34518
Relate to Another Database: SFARIGene; denovo-db
Unigene EST Top
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
embryoid body7 / 7076198
blastocyst7 / 62319112
fetus17 / 56401230
neonate6 / 31097192
infant3 / 23620127
juvenile0 / 555560 
adult165 / 193912185
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
adrenal tumor1 / 1279478
bladder carcinoma0 / 174750 
breast (mammary gland) tumor3 / 9417831
cervical tumor5 / 34366145
chondrosarcoma19 / 82823229
colorectal tumor14 / 114246122
esophageal tumor2 / 17290115
gastrointestinal tumor5 / 11936941
germ cell tumor30 / 263845113
glioma35 / 106883327
head and neck tumor24 / 136302176
kidney tumor7 / 68959101
leukemia11 / 95842114
liver tumor1 / 9635910
lung tumor9 / 10312787
lymphoma11 / 71755153
non-neoplasia11 / 97250113
normal166 / 336030749
ovarian tumor1 / 7668213
pancreatic tumor24 / 104616229
primitive neuroectodermal tumor of the CNS6 / 12568047
prostate cancer0 / 1026800 
retinoblastoma2 / 4635643
skin tumor3 / 12494924
soft tissue/muscle tissue tumor2 / 12519115
uterine tumor7 / 9025777
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
adipose tissue0 / 131060 
adrenal gland1 / 3319730
ascites4 / 4001599
bladder2 / 2975767
blood10 / 12347880
bone10 / 71655139
bone marrow0 / 488010 
brain98 / 110098989
cervix6 / 48171124
connective tissue18 / 149255120
ear0 / 162120 
embryonic tissue16 / 21572274
esophagus2 / 2020998
eye29 / 211054137
heart5 / 8962655
intestine20 / 23447285
kidney12 / 21177756
larynx19 / 24145786
liver3 / 20774314
lung30 / 33697489
lymph6 / 44270135
lymph node8 / 9161087
mammary gland6 / 15327139
mouth3 / 6705244
muscle5 / 10771546
nerve0 / 157680 
ovary3 / 10205129
pancreas27 / 214812125
parathyroid5 / 20539243
pharynx4 / 4132896
pituitary gland3 / 16585180
placenta4 / 28082514
prostate3 / 18934515
salivary gland0 / 201550 
skin16 / 21057475
spleen7 / 53952129
stomach2 / 9661920
testis24 / 33044272
thymus8 / 8113198
thyroid3 / 4747363
tonsil4 / 16999235
trachea0 / 524130 
umbilical cord4 / 13680292
uterus13 / 23287855
vascular3 / 5178057
Microarray in BioGPS Top
Select probe  
  • Microarray Platform: GeneAtlas U133A, gcrma
  • Affymatrix Probe ID: 208091_s_at
Cell line Expression level Expression bar
721_B_lymphoblasts1536.25
Adipocyte231.35
AdrenalCortex112.8
Adrenalgland97.6
Amygdala241.1
Appendix104.9
AtrioventricularNode95.15
BDCA4+_DentriticCells1264.4
Bonemarrow163.75
BronchialEpithelialCells450.5
CD105+_Endothelial222.85
CD14+_Monocytes455.15
CD19+_BCells(neg._sel.)1181.8
CD33+_Myeloid450.4
CD34+296.5
CD4+_Tcells660.05
CD56+_NKCells1349.9
CD71+_EarlyErythroid133.05
CD8+_Tcells502.15
CardiacMyocytes348.1
Caudatenucleus112.85
Cerebellum165.45
CerebellumPeduncles223.1
CiliaryGanglion92.55
CingulateCortex236.1
Colorectaladenocarcinoma303.9
DorsalRootGanglion117.45
FetalThyroid128.05
Fetalbrain594.95
Fetalliver82.4
Fetallung119.55
GlobusPallidus119.4
Heart94.05
Hypothalamus398.05
Kidney88.15
Leukemia_chronicMyelogenousK-56276.55
Leukemia_promyelocytic-HL-60507.55
Leukemialymphoblastic(MOLT-4)78.3
Liver131.05
Lung295.25
Lymphnode567.15
Lymphoma_burkitts(Daudi)853.35
Lymphoma_burkitts(Raji)1208.35
MedullaOblongata118.6
OccipitalLobe245.65
OlfactoryBulb223.4
Ovary67.95
Pancreas190.3
PancreaticIslet375.65
ParietalLobe192.4
Pituitary359.6
Placenta158.45
Pons139.75
PrefrontalCortex347.7
Prostate238.95
Salivarygland152.35
SkeletalMuscle134.2
Skin59.8
SmoothMuscle634.2
Spinalcord385.55
SubthalamicNucleus178.05
SuperiorCervicalGanglion67.15
TemporalLobe185.7
Testis80.5
TestisGermCell77.3
TestisIntersitial52.85
TestisLeydigCell89.4
TestisSeminiferousTubule49.4
Thalamus321.45
Thymus943.8
Thyroid201.15
Tongue89.45
Tonsil434.6
Trachea141.9
TrigeminalGanglion164.65
Uterus128.15
UterusCorpus139.15
WholeBlood812.6
Wholebrain394.8
colon247.3
pineal_day1032.96
pineal_night844.86
retina894.425
small_intestine295.15
Allen Brain Atlas Top
Human Whole Brain Microarrayview in Allen Brain Atlas
  • Probe id     Donor id      
  • Probe name: A_23_P168211
  • Donor H0351.2001
  • Sex: Male     Age: 24 years     Race/Ethnicity: African American     Handedness: Left
  • Tissue Receipt Date: 7/29/2009     Serology: Pass      Tissue pH :6.72     Additional Medical Information :History of asthma
  • Postmortem Interval: 23 hours (estimated time of death to time that tissue is frozen)
  • Toxicology: Positive for atropine and caffeine, at levels usually not toxicologically significant
Tissue Expression(mean ± stddev) Expression Bar
Amygdala7.89 ± 0.25
Basal Forebrain7.86 ± 0.22
Basal Part of Pons7.62 ± 0.21
Cerebellar Cortex7.9 ± 0.26
Cerebellar Nuclei7.55 ± 0.25
Claustrum7.41 ± 0.45
Epithalamus8.22 ± 0.25
Frontal Lobe7.95 ± 0.35
Globus Pallidus7.63 ± 0.33
Hypothalamus8.01 ± 0.3
Insula8.07 ± 0.13
Limbic Lobe7.61 ± 0.35
Mesencephalon7.8 ± 0.35
Myelencephalon7.83 ± 0.39
Occipital Lobe7.59 ± 0.41
Parietal Lobe7.89 ± 0.34
Pontine Tegmentum7.92 ± 0.44
Striatum7.15 ± 0.37
Subthalamus7.94 ± 0.49
Temporal Lobe8.06 ± 0.27
Thalamus8.22 ± 0.4
White Matter7.2 ± 0.38
Mouse Brain ISH
Gene Symbol Brain Structure ID Brain Structure Name Express Desity/Level (Meatured by ISH) Express Bar
AW146242CBCerebellum7.75
11.51
AW146242CTXCerebral cortex95.99
97.51
AW146242HIPHippocampal region18.98
25.28
AW146242HPFHippocampal formation30.06
37.16
AW146242HYHypothalamus1.29
1.14
AW146242LSXLateral septal complex4.47
4.52
AW146242MBMidbrain2.67
3.45
AW146242MYMedulla0.68
0.87
AW146242OLFOlfactory bulb32.86
36.21
AW146242PPons0.92
1.4
AW146242PALPallidum2.49
2.71
AW146242RHPRetrohippocampal region48.59
53.51
AW146242sAMYStriatum-like amygdalar nuclei20.57
17.28
AW146242STRStriatum7.01
6.8
AW146242STRdStriatum dorsal region4.65
5.27
AW146242STRvStriatum ventral region8.1
6.43
AW146242THThalamus3.71
3.59
Peptide Top

Simple Query:


  (e.g. CHD8)

Syndromic Genes

Non-syndromic Genes

AutismKB Statistics

  • Studies: 1,036
  • Genes: 1,379
  • CNVs/SVs: 5,420
  • SNVs/Indels: 11,669
  • de novo Mutations: 5,669
  • Mosaics: 789
  • Linkage Regions: 172
  • Paper Collected: 6/30/2018
  • Last Update: 8/26/2018


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